RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-arm64-028 4.2.0-42-generic #49-Ubuntu SMP Tue Jun 28 21:24:20 UTC 2016 aarch64 Buildd toolchain package versions: launchpad-buildd_139 python-lpbuildd_139 sbuild_0.65.2-1ubuntu2+ubuntu15.10.3 bzr-builder_0.7.3-0ubuntu1 bzr_2.6.0+bzr6602-2ubuntu4 git-build-recipe_0.3~git201603101733.90b6821~ubuntu15.10.1 git_1:2.5.0-1ubuntu0.2 dpkg-dev_1.18.2ubuntu5.1 python-debian_0.1.27ubuntu1 qemu-user-static_1:2.3+dfsg-5ubuntu9.4. Syncing the system clock with the buildd NTP service... 17 Sep 18:06:18 ntpdate[1586]: adjust time server 10.211.37.1 offset 0.000227 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-10920990', '/home/buildd/filecache-default/2569747bf3e651e91ea4c9c8449746fa1ff3dc11'] Unpacking chroot for build PACKAGEBUILD-10920990 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-10920990'] Mounting chroot for build PACKAGEBUILD-10920990 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-10920990', 'deb http://ftpmaster.internal/ubuntu yakkety main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-security main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-updates main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-10920990 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-10920990', 'armhf'] Updating debian chroot for build PACKAGEBUILD-10920990 Get:1 http://ftpmaster.internal/ubuntu yakkety InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety-updates InRelease [92.2 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety-proposed InRelease [95.7 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main armhf Packages [1152 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main Translation-en [572 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/universe armhf Packages [7559 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/universe Translation-en [4507 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety-security/main armhf Packages [64 B] Get:10 http://ftpmaster.internal/ubuntu yakkety-security/main Translation-en [64 B] Get:11 http://ftpmaster.internal/ubuntu yakkety-security/universe armhf Packages [64 B] Get:12 http://ftpmaster.internal/ubuntu yakkety-security/universe Translation-en [64 B] Get:13 http://ftpmaster.internal/ubuntu yakkety-updates/main armhf Packages [64 B] Get:14 http://ftpmaster.internal/ubuntu yakkety-updates/main Translation-en [64 B] Get:15 http://ftpmaster.internal/ubuntu yakkety-updates/universe armhf Packages [64 B] Get:16 http://ftpmaster.internal/ubuntu yakkety-updates/universe Translation-en [64 B] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main armhf Packages [69.0 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main Translation-en [32.8 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/universe armhf Packages [190 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety-proposed/universe Translation-en [150 kB] Fetched 14.8 MB in 5s (2894 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-5 libprocps4 libstdc++-5-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-6 g++-6 gcc-6 gnupg-agent libasan3 libassuan0 libcap-ng0 libgcc-6-dev libip4tc0 libksba8 libnpth0 libpng16-16 libprocps6 libreadline7 libstdc++-6-dev pinentry-curses The following packages will be upgraded: apt apt-transport-https base-files base-passwd bash binutils bsdutils bzip2 cpp cpp-5 dash debconf debianutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs fakeroot findutils g++ g++-5 gcc gcc-5 gcc-5-base gcc-6-base gnupg gpgv grep hostname init init-system-helpers libapparmor1 libapt-pkg5.0 libasan2 libatomic1 libaudit-common libaudit1 libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcap2-bin libcc1-0 libcomerr2 libcryptsetup4 libcurl3-gnutls libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libgcc-5-dev libgcc1 libgcrypt20 libgdbm3 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn11 libisl15 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 libldap-2.4-2 liblzma5 libmount1 libmpfr4 libncurses5 libncursesw5 libp11-kit0 libpcre3 libperl5.22 libreadline6 librtmp1 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libusb-0.1-4 libuuid1 linux-libc-dev login lsb-base make mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.22 pkgbinarymangler policyrcd-script-zg2 procps readline-common sed systemd systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux xz-utils zlib1g 132 upgraded, 16 newly installed, 0 to remove and 0 not upgraded. Need to get 143 MB of archives. After this operation, 361 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu yakkety/main armhf base-files armhf 9.6ubuntu4 [56.1 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety/main armhf debianutils armhf 4.8 [84.3 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main armhf bash armhf 4.3-15ubuntu1 [503 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main armhf bsdutils armhf 1:2.28.2-1ubuntu1 [51.3 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main armhf tar armhf 1.29b-1 [194 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main armhf dpkg armhf 1.18.10ubuntu1 [2062 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main armhf dash armhf 0.5.8-2.3ubuntu1 [100 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main armhf libc6-dev armhf 2.24-0ubuntu1 [1807 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main armhf libc-dev-bin armhf 2.24-0ubuntu1 [59.4 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main armhf linux-libc-dev armhf 4.4.0-9136.55 [807 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main armhf libc6 armhf 2.24-0ubuntu1 [2146 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main armhf libc-bin armhf 2.24-0ubuntu1 [507 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main armhf gcc-6-base armhf 6.2.0-3ubuntu15 [16.6 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main armhf libgcc1 armhf 1:6.2.0-3ubuntu15 [38.5 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main armhf e2fslibs armhf 1.43.1-1 [142 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main armhf e2fsprogs armhf 1.43.1-1 [470 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main armhf findutils armhf 4.6.0+git+20160703-2 [268 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main armhf grep armhf 2.25-6 [141 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main armhf hostname armhf 3.18 [10.3 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main armhf login armhf 1:4.2-3.1ubuntu6 [303 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main armhf libsmartcols1 armhf 2.28.2-1ubuntu1 [56.0 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main armhf libaudit-common all 1:2.6.6-1ubuntu1 [4628 B] Get:23 http://ftpmaster.internal/ubuntu yakkety/main armhf libcap-ng0 armhf 0.7.7-3 [9936 B] Get:24 http://ftpmaster.internal/ubuntu yakkety/main armhf libaudit1 armhf 1:2.6.6-1ubuntu1 [34.8 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main armhf libpcre3 armhf 2:8.39-2 [209 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main armhf libselinux1 armhf 2.5-3 [56.4 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main armhf libsepol1 armhf 2.5-1 [188 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety/main armhf libsemanage-common all 2.5-1 [6800 B] Get:29 http://ftpmaster.internal/ubuntu yakkety/main armhf libsemanage1 armhf 2.5-1 [69.3 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main armhf bzip2 armhf 1.0.6-8build1 [31.0 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main armhf libbz2-1.0 armhf 1.0.6-8build1 [29.0 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main armhf passwd armhf 1:4.2-3.1ubuntu6 [747 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main armhf libuuid1 armhf 2.28.2-1ubuntu1 [14.0 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/main armhf libblkid1 armhf 2.28.2-1ubuntu1 [93.9 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety/main armhf libfdisk1 armhf 2.28.2-1ubuntu1 [126 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/main armhf perl-modules-5.22 all 5.22.2-3 [2631 kB] Get:37 http://ftpmaster.internal/ubuntu yakkety/main armhf libperl5.22 armhf 5.22.2-3 [2724 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety/main armhf perl armhf 5.22.2-3 [238 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/main armhf perl-base armhf 5.22.2-3 [1179 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety/main armhf libdb5.3 armhf 5.3.28-12 [589 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/main armhf libgdbm3 armhf 1.8.3-14 [15.3 kB] Get:42 http://ftpmaster.internal/ubuntu yakkety/main armhf zlib1g armhf 1:1.2.8.dfsg-2ubuntu5 [45.4 kB] Get:43 http://ftpmaster.internal/ubuntu yakkety/main armhf init-system-helpers all 1.44 [37.6 kB] Get:44 http://ftpmaster.internal/ubuntu yakkety/main armhf util-linux armhf 2.28.2-1ubuntu1 [824 kB] Get:45 http://ftpmaster.internal/ubuntu yakkety/main armhf sysvinit-utils armhf 2.88dsf-59.8git1 [16.9 kB] Get:46 http://ftpmaster.internal/ubuntu yakkety/main armhf mount armhf 2.28.2-1ubuntu1 [119 kB] Get:47 http://ftpmaster.internal/ubuntu yakkety/main armhf ncurses-bin armhf 6.0+20160625-1ubuntu1 [132 kB] Get:48 http://ftpmaster.internal/ubuntu yakkety/main armhf sed armhf 4.2.2-7.1 [133 kB] Get:49 http://ftpmaster.internal/ubuntu yakkety/main armhf init armhf 1.44 [5166 B] Get:50 http://ftpmaster.internal/ubuntu yakkety/main armhf libdebconfclient0 armhf 0.213ubuntu1 [5632 B] Get:51 http://ftpmaster.internal/ubuntu yakkety/main armhf base-passwd armhf 3.5.40 [47.4 kB] Get:52 http://ftpmaster.internal/ubuntu yakkety/main armhf ncurses-base all 6.0+20160625-1ubuntu1 [16.6 kB] Get:53 http://ftpmaster.internal/ubuntu yakkety/main armhf liblzma5 armhf 5.1.1alpha+20120614-2.1ubuntu1 [74.3 kB] Get:54 http://ftpmaster.internal/ubuntu yakkety/main armhf libstdc++6 armhf 6.2.0-3ubuntu15 [357 kB] Get:55 http://ftpmaster.internal/ubuntu yakkety/main armhf libapt-pkg5.0 armhf 1.3~rc4ubuntu1 [702 kB] Get:56 http://ftpmaster.internal/ubuntu yakkety/main armhf libgpg-error0 armhf 1.24-1 [29.6 kB] Get:57 http://ftpmaster.internal/ubuntu yakkety/main armhf libgcrypt20 armhf 1.7.2-2ubuntu1 [337 kB] Get:58 http://ftpmaster.internal/ubuntu yakkety-proposed/main armhf gpgv armhf 2.1.15-1ubuntu3 [158 kB] Get:59 http://ftpmaster.internal/ubuntu yakkety/main armhf libassuan0 armhf 2.4.3-1 [28.2 kB] Get:60 http://ftpmaster.internal/ubuntu yakkety/main armhf libncurses5 armhf 6.0+20160625-1ubuntu1 [74.5 kB] Get:61 http://ftpmaster.internal/ubuntu yakkety/main armhf libtinfo5 armhf 6.0+20160625-1ubuntu1 [66.3 kB] Get:62 http://ftpmaster.internal/ubuntu yakkety/main armhf libncursesw5 armhf 6.0+20160625-1ubuntu1 [93.8 kB] Get:63 http://ftpmaster.internal/ubuntu yakkety/main armhf pinentry-curses armhf 0.9.7-5 [27.0 kB] Get:64 http://ftpmaster.internal/ubuntu yakkety/main armhf libnpth0 armhf 1.2-3 [6986 B] Get:65 http://ftpmaster.internal/ubuntu yakkety-proposed/main armhf readline-common all 7.0-0ubuntu2 [52.8 kB] Get:66 http://ftpmaster.internal/ubuntu yakkety-proposed/main armhf libreadline7 armhf 7.0-0ubuntu2 [104 kB] Get:67 http://ftpmaster.internal/ubuntu yakkety-proposed/main armhf gnupg-agent armhf 2.1.15-1ubuntu3 [212 kB] Get:68 http://ftpmaster.internal/ubuntu yakkety/main armhf libksba8 armhf 1.3.4-4 [78.8 kB] Get:69 http://ftpmaster.internal/ubuntu yakkety-proposed/main armhf libsqlite3-0 armhf 3.14.1-1build1 [407 kB] Get:70 http://ftpmaster.internal/ubuntu yakkety-proposed/main armhf gnupg armhf 2.1.15-1ubuntu3 [712 kB] Get:71 http://ftpmaster.internal/ubuntu yakkety/main armhf ubuntu-keyring all 2016.09.01 [16.5 kB] Get:72 http://ftpmaster.internal/ubuntu yakkety/main armhf apt armhf 1.3~rc4ubuntu1 [1014 kB] Get:73 http://ftpmaster.internal/ubuntu yakkety/main armhf debconf all 1.5.59ubuntu1 [136 kB] Get:74 http://ftpmaster.internal/ubuntu yakkety/main armhf libip4tc0 armhf 1.6.0-3ubuntu2 [18.3 kB] Get:75 http://ftpmaster.internal/ubuntu yakkety/main armhf libapparmor1 armhf 2.10.95-4ubuntu4 [28.6 kB] Get:76 http://ftpmaster.internal/ubuntu yakkety/main armhf libcap2 armhf 1:2.25-1 [12.3 kB] Get:77 http://ftpmaster.internal/ubuntu yakkety/main armhf libudev1 armhf 231-6 [52.1 kB] Get:78 http://ftpmaster.internal/ubuntu yakkety/main armhf libdevmapper1.02.1 armhf 2:1.02.130-1ubuntu1 [156 kB] Get:79 http://ftpmaster.internal/ubuntu yakkety/main armhf libcryptsetup4 armhf 2:1.7.2-0ubuntu1 [68.0 kB] Get:80 http://ftpmaster.internal/ubuntu yakkety/main armhf libidn11 armhf 1.33-1 [42.4 kB] Get:81 http://ftpmaster.internal/ubuntu yakkety/main armhf libkmod2 armhf 22-1.1ubuntu1 [34.5 kB] Get:82 http://ftpmaster.internal/ubuntu yakkety/main armhf libmount1 armhf 2.28.2-1ubuntu1 [103 kB] Get:83 http://ftpmaster.internal/ubuntu yakkety/main armhf libseccomp2 armhf 2.3.1-2ubuntu2 [30.0 kB] Get:84 http://ftpmaster.internal/ubuntu yakkety/main armhf libcap2-bin armhf 1:2.25-1 [20.1 kB] Get:85 http://ftpmaster.internal/ubuntu yakkety/main armhf libsystemd0 armhf 231-6 [192 kB] Get:86 http://ftpmaster.internal/ubuntu yakkety/main armhf systemd armhf 231-6 [2092 kB] Get:87 http://ftpmaster.internal/ubuntu yakkety/main armhf systemd-sysv armhf 231-6 [14.4 kB] Get:88 http://ftpmaster.internal/ubuntu yakkety/main armhf libcomerr2 armhf 1.43.1-1 [9294 B] Get:89 http://ftpmaster.internal/ubuntu yakkety/main armhf libss2 armhf 1.43.1-1 [9476 B] Get:90 http://ftpmaster.internal/ubuntu yakkety/main armhf lsb-base all 9.20160110ubuntu5 [13.2 kB] Get:91 http://ftpmaster.internal/ubuntu yakkety/main armhf multiarch-support armhf 2.24-0ubuntu1 [6820 B] Get:92 http://ftpmaster.internal/ubuntu yakkety/main armhf libprocps6 armhf 2:3.3.12-1ubuntu2 [28.4 kB] Get:93 http://ftpmaster.internal/ubuntu yakkety/main armhf procps armhf 2:3.3.12-1ubuntu2 [217 kB] Get:94 http://ftpmaster.internal/ubuntu yakkety/main armhf tzdata all 2016f-1 [169 kB] Get:95 http://ftpmaster.internal/ubuntu yakkety/main armhf dmsetup armhf 2:1.02.130-1ubuntu1 [76.4 kB] Get:96 http://ftpmaster.internal/ubuntu yakkety-proposed/main armhf libreadline6 armhf 6.3-8ubuntu8 [97.5 kB] Get:97 http://ftpmaster.internal/ubuntu yakkety/main armhf libslang2 armhf 2.3.0-2.3ubuntu1 [375 kB] Get:98 http://ftpmaster.internal/ubuntu yakkety/main armhf libssl1.0.0 armhf 1.0.2g-1ubuntu8 [710 kB] Get:99 http://ftpmaster.internal/ubuntu yakkety/main armhf xz-utils armhf 5.1.1alpha+20120614-2.1ubuntu1 [76.7 kB] Get:100 http://ftpmaster.internal/ubuntu yakkety/main armhf libgmp10 armhf 2:6.1.1+dfsg-1 [183 kB] Get:101 http://ftpmaster.internal/ubuntu yakkety/main armhf libp11-kit0 armhf 0.23.2-5 [91.5 kB] Get:102 http://ftpmaster.internal/ubuntu yakkety/main armhf libtasn1-6 armhf 4.9-4 [30.4 kB] Get:103 http://ftpmaster.internal/ubuntu yakkety/main armhf libgnutls30 armhf 3.5.3-4ubuntu1 [559 kB] Get:104 http://ftpmaster.internal/ubuntu yakkety/main armhf libgssapi-krb5-2 armhf 1.14.3+dfsg-2 [99.1 kB] Get:105 http://ftpmaster.internal/ubuntu yakkety/main armhf libkrb5-3 armhf 1.14.3+dfsg-2 [231 kB] Get:106 http://ftpmaster.internal/ubuntu yakkety/main armhf libkrb5support0 armhf 1.14.3+dfsg-2 [28.0 kB] Get:107 http://ftpmaster.internal/ubuntu yakkety/main armhf libk5crypto3 armhf 1.14.3+dfsg-2 [78.5 kB] Get:108 http://ftpmaster.internal/ubuntu yakkety/main armhf libkeyutils1 armhf 1.5.9-9ubuntu1 [8788 B] Get:109 http://ftpmaster.internal/ubuntu yakkety/main armhf libsasl2-modules-db armhf 2.1.26.dfsg1-15 [12.9 kB] Get:110 http://ftpmaster.internal/ubuntu yakkety/main armhf libsasl2-2 armhf 2.1.26.dfsg1-15 [42.0 kB] Get:111 http://ftpmaster.internal/ubuntu yakkety/main armhf libldap-2.4-2 armhf 2.4.42+dfsg-2ubuntu4 [138 kB] Get:112 http://ftpmaster.internal/ubuntu yakkety/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [49.1 kB] Get:113 http://ftpmaster.internal/ubuntu yakkety/main armhf libcurl3-gnutls armhf 7.50.1-1ubuntu1 [161 kB] Get:114 http://ftpmaster.internal/ubuntu yakkety/main armhf apt-transport-https armhf 1.3~rc4ubuntu1 [30.2 kB] Get:115 http://ftpmaster.internal/ubuntu yakkety/main armhf libpng16-16 armhf 1.6.25-1 [158 kB] Get:116 http://ftpmaster.internal/ubuntu yakkety/main armhf openssl armhf 1.0.2g-1ubuntu8 [486 kB] Get:117 http://ftpmaster.internal/ubuntu yakkety/main armhf binutils armhf 2.27-8ubuntu1 [2379 kB] Get:118 http://ftpmaster.internal/ubuntu yakkety/main armhf libisl15 armhf 0.17.1-1 [418 kB] Get:119 http://ftpmaster.internal/ubuntu yakkety/main armhf libmpfr4 armhf 3.1.4-2 [170 kB] Get:120 http://ftpmaster.internal/ubuntu yakkety/main armhf cpp-6 armhf 6.2.0-3ubuntu15 [28.1 MB] Get:121 http://ftpmaster.internal/ubuntu yakkety/main armhf cpp armhf 4:6.1.1-1ubuntu2 [27.4 kB] Get:122 http://ftpmaster.internal/ubuntu yakkety/main armhf libgomp1 armhf 6.2.0-3ubuntu15 [67.7 kB] Get:123 http://ftpmaster.internal/ubuntu yakkety/main armhf libatomic1 armhf 6.2.0-3ubuntu15 [6206 B] Get:124 http://ftpmaster.internal/ubuntu yakkety/main armhf libasan2 armhf 5.4.1-2ubuntu1 [240 kB] Get:125 http://ftpmaster.internal/ubuntu yakkety/main armhf libubsan0 armhf 6.2.0-3ubuntu15 [95.7 kB] Get:126 http://ftpmaster.internal/ubuntu yakkety/main armhf g++-5 armhf 5.4.1-2ubuntu1 [5281 kB] Get:127 http://ftpmaster.internal/ubuntu yakkety/main armhf gcc-5 armhf 5.4.1-2ubuntu1 [5540 kB] Get:128 http://ftpmaster.internal/ubuntu yakkety/main armhf libstdc++-5-dev armhf 5.4.1-2ubuntu1 [1464 kB] Get:129 http://ftpmaster.internal/ubuntu yakkety/main armhf libgcc-5-dev armhf 5.4.1-2ubuntu1 [468 kB] Get:130 http://ftpmaster.internal/ubuntu yakkety/main armhf libcc1-0 armhf 6.2.0-3ubuntu15 [26.0 kB] Get:131 http://ftpmaster.internal/ubuntu yakkety/main armhf cpp-5 armhf 5.4.1-2ubuntu1 [4916 kB] Get:132 http://ftpmaster.internal/ubuntu yakkety/main armhf gcc-5-base armhf 5.4.1-2ubuntu1 [17.6 kB] Get:133 http://ftpmaster.internal/ubuntu yakkety/main armhf dpkg-dev all 1.18.10ubuntu1 [651 kB] Get:134 http://ftpmaster.internal/ubuntu yakkety/main armhf libdpkg-perl all 1.18.10ubuntu1 [204 kB] Get:135 http://ftpmaster.internal/ubuntu yakkety/main armhf make armhf 4.1-9 [137 kB] Get:136 http://ftpmaster.internal/ubuntu yakkety/main armhf libfakeroot armhf 1.21-1ubuntu2 [22.0 kB] Get:137 http://ftpmaster.internal/ubuntu yakkety/main armhf fakeroot armhf 1.21-1ubuntu2 [60.1 kB] Get:138 http://ftpmaster.internal/ubuntu yakkety/main armhf libasan3 armhf 6.2.0-3ubuntu15 [285 kB] Get:139 http://ftpmaster.internal/ubuntu yakkety/main armhf libgcc-6-dev armhf 6.2.0-3ubuntu15 [544 kB] Get:140 http://ftpmaster.internal/ubuntu yakkety/main armhf gcc-6 armhf 6.2.0-3ubuntu15 [27.8 MB] Get:141 http://ftpmaster.internal/ubuntu yakkety/main armhf gcc armhf 4:6.1.1-1ubuntu2 [5182 B] Get:142 http://ftpmaster.internal/ubuntu yakkety/main armhf libstdc++-6-dev armhf 6.2.0-3ubuntu15 [1493 kB] Get:143 http://ftpmaster.internal/ubuntu yakkety/main armhf g++-6 armhf 6.2.0-3ubuntu15 [30.4 MB] Get:144 http://ftpmaster.internal/ubuntu yakkety/main armhf g++ armhf 4:6.1.1-1ubuntu2 [1482 B] Get:145 http://ftpmaster.internal/ubuntu yakkety/main armhf libusb-0.1-4 armhf 2:0.1.12-30 [15.6 kB] Get:146 http://ftpmaster.internal/ubuntu yakkety/main armhf optipng armhf 0.7.6-1build1 [79.6 kB] Get:147 http://ftpmaster.internal/ubuntu yakkety/main armhf pkgbinarymangler all 130 [43.2 kB] Get:148 http://ftpmaster.internal/ubuntu yakkety/main armhf policyrcd-script-zg2 all 0.1-3 [5610 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 143 MB in 6s (22.4 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11909 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.28.2-1ubuntu1_armhf.deb ... Unpacking libfdisk1:armhf (2.28.2-1ubuntu1) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libfdisk1:armhf (2.28.2-1ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... 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Unpacking perl-base (5.22.2-3) over (5.22.1-9) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up perl-base (5.22.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11910 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28-12_armhf.deb ... Unpacking libdb5.3:armhf (5.3.28-12) over (5.3.28-11) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libdb5.3:armhf (5.3.28-12) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11910 files and directories currently installed.) Preparing to unpack .../libgdbm3_1.8.3-14_armhf.deb ... Unpacking libgdbm3:armhf (1.8.3-14) over (1.8.3-13.1) ... Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-2ubuntu5_armhf.deb ... Unpacking zlib1g:armhf (1:1.2.8.dfsg-2ubuntu5) over (1:1.2.8.dfsg-2ubuntu4) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up zlib1g:armhf (1:1.2.8.dfsg-2ubuntu5) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11910 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.44_all.deb ... Unpacking init-system-helpers (1.44) over (1.29ubuntu1) ... Setting up init-system-helpers (1.44) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11914 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.88dsf-59.8git1_armhf.deb ... Unpacking sysvinit-utils (2.88dsf-59.8git1) over (2.88dsf-59.3ubuntu2) ... Replacing files in old package initscripts (2.88dsf-59.3ubuntu2) ... Preparing to unpack .../util-linux_2.28.2-1ubuntu1_armhf.deb ... Unpacking util-linux (2.28.2-1ubuntu1) over (2.27.1-6ubuntu3) ... Setting up util-linux (2.28.2-1ubuntu1) ... Removing obsolete conffile /etc/init/hwclock-save.conf ... Removing obsolete conffile /etc/init/hwclock.conf ... Removing obsolete conffile /etc/init/hwclock.sh.conf ... Processing triggers for systemd (229-4ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11916 files and directories currently installed.) Preparing to unpack .../mount_2.28.2-1ubuntu1_armhf.deb ... Unpacking mount (2.28.2-1ubuntu1) over (2.27.1-6ubuntu3) ... Setting up mount (2.28.2-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11919 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.0+20160625-1ubuntu1_armhf.deb ... Unpacking ncurses-bin (6.0+20160625-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Setting up ncurses-bin (6.0+20160625-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11918 files and directories currently installed.) Preparing to unpack .../sed_4.2.2-7.1_armhf.deb ... Unpacking sed (4.2.2-7.1) over (4.2.2-7) ... Setting up sed (4.2.2-7.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11918 files and directories currently installed.) Preparing to unpack .../archives/init_1.44_armhf.deb ... Unpacking init (1.44) over (1.29ubuntu1) ... Setting up init (1.44) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11918 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.213ubuntu1_armhf.deb ... Unpacking libdebconfclient0:armhf (0.213ubuntu1) over (0.198ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libdebconfclient0:armhf (0.213ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11918 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.40_armhf.deb ... Unpacking base-passwd (3.5.40) over (3.5.39) ... Setting up base-passwd (3.5.40) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11918 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.0+20160625-1ubuntu1_all.deb ... Unpacking ncurses-base (6.0+20160625-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Setting up ncurses-base (6.0+20160625-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11918 files and directories currently installed.) Preparing to unpack .../liblzma5_5.1.1alpha+20120614-2.1ubuntu1_armhf.deb ... Unpacking liblzma5:armhf (5.1.1alpha+20120614-2.1ubuntu1) over (5.1.1alpha+20120614-2ubuntu2) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up liblzma5:armhf (5.1.1alpha+20120614-2.1ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11918 files and directories currently installed.) Preparing to unpack .../libstdc++6_6.2.0-3ubuntu15_armhf.deb ... Unpacking libstdc++6:armhf (6.2.0-3ubuntu15) over (5.3.1-14ubuntu2) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libstdc++6:armhf (6.2.0-3ubuntu15) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11918 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.3~rc4ubuntu1_armhf.deb ... Unpacking libapt-pkg5.0:armhf (1.3~rc4ubuntu1) over (1.2.10ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libapt-pkg5.0:armhf (1.3~rc4ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11918 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.24-1_armhf.deb ... Unpacking libgpg-error0:armhf (1.24-1) over (1.21-2ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libgpg-error0:armhf (1.24-1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11918 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.2-2ubuntu1_armhf.deb ... Unpacking libgcrypt20:armhf (1.7.2-2ubuntu1) over (1.6.5-2) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libgcrypt20:armhf (1.7.2-2ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11918 files and directories currently installed.) Preparing to unpack .../gpgv_2.1.15-1ubuntu3_armhf.deb ... Unpacking gpgv (2.1.15-1ubuntu3) over (1.4.20-1ubuntu3) ... Setting up gpgv (2.1.15-1ubuntu3) ... Selecting previously unselected package libassuan0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11919 files and directories currently installed.) Preparing to unpack .../libassuan0_2.4.3-1_armhf.deb ... Unpacking libassuan0:armhf (2.4.3-1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libassuan0:armhf (2.4.3-1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11924 files and directories currently installed.) Preparing to unpack .../libncurses5_6.0+20160625-1ubuntu1_armhf.deb ... Unpacking libncurses5:armhf (6.0+20160625-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Preparing to unpack .../libtinfo5_6.0+20160625-1ubuntu1_armhf.deb ... Unpacking libtinfo5:armhf (6.0+20160625-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libtinfo5:armhf (6.0+20160625-1ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11925 files and directories currently installed.) Preparing to unpack .../libncursesw5_6.0+20160625-1ubuntu1_armhf.deb ... Unpacking libncursesw5:armhf (6.0+20160625-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libncursesw5:armhf (6.0+20160625-1ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Selecting previously unselected package pinentry-curses. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11925 files and directories currently installed.) Preparing to unpack .../pinentry-curses_0.9.7-5_armhf.deb ... Unpacking pinentry-curses (0.9.7-5) ... Setting up pinentry-curses (0.9.7-5) ... Selecting previously unselected package libnpth0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11933 files and directories currently installed.) Preparing to unpack .../libnpth0_1.2-3_armhf.deb ... Unpacking libnpth0:armhf (1.2-3) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libnpth0:armhf (1.2-3) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11938 files and directories currently installed.) Preparing to unpack .../readline-common_7.0-0ubuntu2_all.deb ... Unpacking readline-common (7.0-0ubuntu2) over (6.3-8ubuntu2) ... Setting up readline-common (7.0-0ubuntu2) ... Selecting previously unselected package libreadline7:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11938 files and directories currently installed.) Preparing to unpack .../libreadline7_7.0-0ubuntu2_armhf.deb ... Unpacking libreadline7:armhf (7.0-0ubuntu2) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libreadline7:armhf (7.0-0ubuntu2) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Selecting previously unselected package gnupg-agent. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11950 files and directories currently installed.) Preparing to unpack .../gnupg-agent_2.1.15-1ubuntu3_armhf.deb ... Unpacking gnupg-agent (2.1.15-1ubuntu3) ... Setting up gnupg-agent (2.1.15-1ubuntu3) ... Selecting previously unselected package libksba8:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11981 files and directories currently installed.) Preparing to unpack .../libksba8_1.3.4-4_armhf.deb ... Unpacking libksba8:armhf (1.3.4-4) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libksba8:armhf (1.3.4-4) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11989 files and directories currently installed.) Preparing to unpack .../libsqlite3-0_3.14.1-1build1_armhf.deb ... Unpacking libsqlite3-0:armhf (3.14.1-1build1) over (3.11.0-1ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libsqlite3-0:armhf (3.14.1-1build1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11989 files and directories currently installed.) Preparing to unpack .../gnupg_2.1.15-1ubuntu3_armhf.deb ... Unpacking gnupg (2.1.15-1ubuntu3) over (1.4.20-1ubuntu3) ... Setting up gnupg (2.1.15-1ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11999 files and directories currently installed.) Preparing to unpack .../ubuntu-keyring_2016.09.01_all.deb ... Unpacking ubuntu-keyring (2016.09.01) over (2012.05.19) ... Setting up ubuntu-keyring (2016.09.01) ... gpg: key 40976EAF437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key 46181433FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: key 3B4FE6ACC0B21F32: "Ubuntu Archive Automatic Signing Key (2012) " not changed gpg: key D94AA3F0EFE21092: "Ubuntu CD Image Automatic Signing Key (2012) " not changed gpg: Total number processed: 4 gpg: unchanged: 4 (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11999 files and directories currently installed.) Preparing to unpack .../apt_1.3~rc4ubuntu1_armhf.deb ... Unpacking apt (1.3~rc4ubuntu1) over (1.2.10ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up apt (1.3~rc4ubuntu1) ... Installing new version of config file /etc/cron.daily/apt-compat ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11997 files and directories currently installed.) Preparing to unpack .../debconf_1.5.59ubuntu1_all.deb ... Unpacking debconf (1.5.59ubuntu1) over (1.5.58ubuntu1) ... Setting up debconf (1.5.59ubuntu1) ... Selecting previously unselected package libip4tc0:armhf. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12002 files and directories currently installed.) Preparing to unpack .../libapparmor1_2.10.95-4ubuntu4_armhf.deb ... Unpacking libapparmor1:armhf (2.10.95-4ubuntu4) over (2.10.95-0ubuntu2) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libapparmor1:armhf (2.10.95-4ubuntu4) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12003 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.25-1_armhf.deb ... Unpacking libcap2:armhf (1:2.25-1) over (1:2.24-12) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libcap2:armhf (1:2.25-1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12003 files and directories currently installed.) Preparing to unpack .../libudev1_231-6_armhf.deb ... Unpacking libudev1:armhf (231-6) over (229-4ubuntu4) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libudev1:armhf (231-6) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12003 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.130-1ubuntu1_armhf.deb ... Unpacking libdevmapper1.02.1:armhf (2:1.02.130-1ubuntu1) over (2:1.02.110-1ubuntu10) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libdevmapper1.02.1:armhf (2:1.02.130-1ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12003 files and directories currently installed.) Preparing to unpack .../libcryptsetup4_2%3a1.7.2-0ubuntu1_armhf.deb ... Unpacking libcryptsetup4:armhf (2:1.7.2-0ubuntu1) over (2:1.6.6-5ubuntu2) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libcryptsetup4:armhf (2:1.7.2-0ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12003 files and directories currently installed.) Preparing to unpack .../libidn11_1.33-1_armhf.deb ... Unpacking libidn11:armhf (1.33-1) over (1.32-3ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libidn11:armhf (1.33-1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12003 files and directories currently installed.) Preparing to unpack .../libkmod2_22-1.1ubuntu1_armhf.deb ... Unpacking libkmod2:armhf (22-1.1ubuntu1) over (22-1ubuntu4) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libkmod2:armhf (22-1.1ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12003 files and directories currently installed.) Preparing to unpack .../libmount1_2.28.2-1ubuntu1_armhf.deb ... Unpacking libmount1:armhf (2.28.2-1ubuntu1) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libmount1:armhf (2.28.2-1ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12003 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.1-2ubuntu2_armhf.deb ... Unpacking libseccomp2:armhf (2.3.1-2ubuntu2) over (2.2.3-3ubuntu3) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libseccomp2:armhf (2.3.1-2ubuntu2) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12003 files and directories currently installed.) Preparing to unpack .../libcap2-bin_1%3a2.25-1_armhf.deb ... Unpacking libcap2-bin (1:2.25-1) over (1:2.24-12) ... Setting up libcap2-bin (1:2.25-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12004 files and directories currently installed.) Preparing to unpack .../libsystemd0_231-6_armhf.deb ... Unpacking libsystemd0:armhf (231-6) over (229-4ubuntu4) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libsystemd0:armhf (231-6) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12004 files and directories currently installed.) Preparing to unpack .../systemd_231-6_armhf.deb ... Unpacking systemd (231-6) over (229-4ubuntu4) ... Setting up systemd (231-6) ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.login1.conf ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.systemd1.conf ... Installing new version of config file /etc/pam.d/systemd-user ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removing obsolete conffile /etc/systemd/bootchart.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11999 files and directories currently installed.) Preparing to unpack .../systemd-sysv_231-6_armhf.deb ... Unpacking systemd-sysv (231-6) over (229-4ubuntu4) ... Setting up systemd-sysv (231-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11999 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.43.1-1_armhf.deb ... Unpacking libcomerr2:armhf (1.43.1-1) over (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libcomerr2:armhf (1.43.1-1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11999 files and directories currently installed.) Preparing to unpack .../libss2_1.43.1-1_armhf.deb ... Unpacking libss2:armhf (1.43.1-1) over (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up libss2:armhf (1.43.1-1) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11999 files and directories currently installed.) Preparing to unpack .../lsb-base_9.20160110ubuntu5_all.deb ... Unpacking lsb-base (9.20160110ubuntu5) over (9.20160110) ... Setting up lsb-base (9.20160110ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11999 files and directories currently installed.) Preparing to unpack .../multiarch-support_2.24-0ubuntu1_armhf.deb ... Unpacking multiarch-support (2.24-0ubuntu1) over (2.23-0ubuntu3) ... Setting up multiarch-support (2.24-0ubuntu1) ... Selecting previously unselected package libprocps6:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11999 files and directories currently installed.) Preparing to unpack .../libprocps6_2%3a3.3.12-1ubuntu2_armhf.deb ... Unpacking libprocps6:armhf (2:3.3.12-1ubuntu2) ... Preparing to unpack .../procps_2%3a3.3.12-1ubuntu2_armhf.deb ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Unpacking procps (2:3.3.12-1ubuntu2) over (2:3.3.10-4ubuntu2) ... Preparing to unpack .../tzdata_2016f-1_all.deb ... Unpacking tzdata (2016f-1) over (2016d-0ubuntu0.16.04) ... Preparing to unpack .../dmsetup_2%3a1.02.130-1ubuntu1_armhf.deb ... Unpacking dmsetup (2:1.02.130-1ubuntu1) over (2:1.02.110-1ubuntu10) ... Preparing to unpack .../libreadline6_6.3-8ubuntu8_armhf.deb ... Unpacking libreadline6:armhf (6.3-8ubuntu8) over (6.3-8ubuntu2) ... Preparing to unpack .../libslang2_2.3.0-2.3ubuntu1_armhf.deb ... Unpacking libslang2:armhf (2.3.0-2.3ubuntu1) over (2.3.0-2ubuntu1) ... Preparing to unpack .../libssl1.0.0_1.0.2g-1ubuntu8_armhf.deb ... Unpacking libssl1.0.0:armhf (1.0.2g-1ubuntu8) over (1.0.2g-1ubuntu4) ... Preparing to unpack .../xz-utils_5.1.1alpha+20120614-2.1ubuntu1_armhf.deb ... Unpacking xz-utils (5.1.1alpha+20120614-2.1ubuntu1) over (5.1.1alpha+20120614-2ubuntu2) ... Preparing to unpack .../libgmp10_2%3a6.1.1+dfsg-1_armhf.deb ... Unpacking libgmp10:armhf (2:6.1.1+dfsg-1) over (2:6.1.0+dfsg-2) ... Preparing to unpack .../libp11-kit0_0.23.2-5_armhf.deb ... Unpacking libp11-kit0:armhf (0.23.2-5) over (0.23.2-3) ... Preparing to unpack .../libtasn1-6_4.9-4_armhf.deb ... Unpacking libtasn1-6:armhf (4.9-4) over (4.7-3) ... Preparing to unpack .../libgnutls30_3.5.3-4ubuntu1_armhf.deb ... Unpacking libgnutls30:armhf (3.5.3-4ubuntu1) over (3.4.10-4ubuntu1) ... Preparing to unpack .../libgssapi-krb5-2_1.14.3+dfsg-2_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.14.3+dfsg-2) over (1.13.2+dfsg-5) ... Preparing to unpack .../libkrb5-3_1.14.3+dfsg-2_armhf.deb ... Unpacking libkrb5-3:armhf (1.14.3+dfsg-2) over (1.13.2+dfsg-5) ... Preparing to unpack .../libkrb5support0_1.14.3+dfsg-2_armhf.deb ... Unpacking libkrb5support0:armhf (1.14.3+dfsg-2) over (1.13.2+dfsg-5) ... Preparing to unpack .../libk5crypto3_1.14.3+dfsg-2_armhf.deb ... Unpacking libk5crypto3:armhf (1.14.3+dfsg-2) over (1.13.2+dfsg-5) ... Preparing to unpack .../libkeyutils1_1.5.9-9ubuntu1_armhf.deb ... Unpacking libkeyutils1:armhf (1.5.9-9ubuntu1) over (1.5.9-8ubuntu1) ... Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-15_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.26.dfsg1-15) over (2.1.26.dfsg1-14build1) ... Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-15_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.26.dfsg1-15) over (2.1.26.dfsg1-14build1) ... Preparing to unpack .../libldap-2.4-2_2.4.42+dfsg-2ubuntu4_armhf.deb ... Unpacking libldap-2.4-2:armhf (2.4.42+dfsg-2ubuntu4) over (2.4.42+dfsg-2ubuntu3) ... Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d.1-1_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) over (2.4+20151223.gitfa8646d-1build1) ... Preparing to unpack .../libcurl3-gnutls_7.50.1-1ubuntu1_armhf.deb ... Unpacking libcurl3-gnutls:armhf (7.50.1-1ubuntu1) over (7.47.0-1ubuntu2) ... Preparing to unpack .../apt-transport-https_1.3~rc4ubuntu1_armhf.deb ... Unpacking apt-transport-https (1.3~rc4ubuntu1) over (1.2.10ubuntu1) ... Selecting previously unselected package libpng16-16:armhf. Preparing to unpack .../libpng16-16_1.6.25-1_armhf.deb ... Unpacking libpng16-16:armhf (1.6.25-1) ... Preparing to unpack .../openssl_1.0.2g-1ubuntu8_armhf.deb ... Unpacking openssl (1.0.2g-1ubuntu8) over (1.0.2g-1ubuntu4) ... Preparing to unpack .../binutils_2.27-8ubuntu1_armhf.deb ... Unpacking binutils (2.27-8ubuntu1) over (2.26-8ubuntu2) ... Preparing to unpack .../libisl15_0.17.1-1_armhf.deb ... Unpacking libisl15:armhf (0.17.1-1) over (0.16.1-1) ... Preparing to unpack .../libmpfr4_3.1.4-2_armhf.deb ... Unpacking libmpfr4:armhf (3.1.4-2) over (3.1.4-1) ... Selecting previously unselected package cpp-6. Preparing to unpack .../cpp-6_6.2.0-3ubuntu15_armhf.deb ... Unpacking cpp-6 (6.2.0-3ubuntu15) ... Preparing to unpack .../cpp_4%3a6.1.1-1ubuntu2_armhf.deb ... Unpacking cpp (4:6.1.1-1ubuntu2) over (4:5.3.1-1ubuntu1) ... Preparing to unpack .../libgomp1_6.2.0-3ubuntu15_armhf.deb ... Unpacking libgomp1:armhf (6.2.0-3ubuntu15) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libatomic1_6.2.0-3ubuntu15_armhf.deb ... Unpacking libatomic1:armhf (6.2.0-3ubuntu15) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libasan2_5.4.1-2ubuntu1_armhf.deb ... Unpacking libasan2:armhf (5.4.1-2ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libubsan0_6.2.0-3ubuntu15_armhf.deb ... Unpacking libubsan0:armhf (6.2.0-3ubuntu15) over (5.3.1-14ubuntu2) ... Preparing to unpack .../g++-5_5.4.1-2ubuntu1_armhf.deb ... Unpacking g++-5 (5.4.1-2ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../gcc-5_5.4.1-2ubuntu1_armhf.deb ... Unpacking gcc-5 (5.4.1-2ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libstdc++-5-dev_5.4.1-2ubuntu1_armhf.deb ... Unpacking libstdc++-5-dev:armhf (5.4.1-2ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libgcc-5-dev_5.4.1-2ubuntu1_armhf.deb ... Unpacking libgcc-5-dev:armhf (5.4.1-2ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libcc1-0_6.2.0-3ubuntu15_armhf.deb ... Unpacking libcc1-0:armhf (6.2.0-3ubuntu15) over (5.3.1-14ubuntu2) ... Preparing to unpack .../cpp-5_5.4.1-2ubuntu1_armhf.deb ... Unpacking cpp-5 (5.4.1-2ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../gcc-5-base_5.4.1-2ubuntu1_armhf.deb ... Unpacking gcc-5-base:armhf (5.4.1-2ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../dpkg-dev_1.18.10ubuntu1_all.deb ... Unpacking dpkg-dev (1.18.10ubuntu1) over (1.18.4ubuntu1) ... Preparing to unpack .../libdpkg-perl_1.18.10ubuntu1_all.deb ... Unpacking libdpkg-perl (1.18.10ubuntu1) over (1.18.4ubuntu1) ... Preparing to unpack .../archives/make_4.1-9_armhf.deb ... Unpacking make (4.1-9) over (4.1-6) ... Preparing to unpack .../libfakeroot_1.21-1ubuntu2_armhf.deb ... Unpacking libfakeroot:armhf (1.21-1ubuntu2) over (1.20.2-1ubuntu1) ... Preparing to unpack .../fakeroot_1.21-1ubuntu2_armhf.deb ... Unpacking fakeroot (1.21-1ubuntu2) over (1.20.2-1ubuntu1) ... Selecting previously unselected package libasan3:armhf. Preparing to unpack .../libasan3_6.2.0-3ubuntu15_armhf.deb ... Unpacking libasan3:armhf (6.2.0-3ubuntu15) ... Selecting previously unselected package libgcc-6-dev:armhf. Preparing to unpack .../libgcc-6-dev_6.2.0-3ubuntu15_armhf.deb ... Unpacking libgcc-6-dev:armhf (6.2.0-3ubuntu15) ... Selecting previously unselected package gcc-6. Preparing to unpack .../gcc-6_6.2.0-3ubuntu15_armhf.deb ... Unpacking gcc-6 (6.2.0-3ubuntu15) ... Preparing to unpack .../gcc_4%3a6.1.1-1ubuntu2_armhf.deb ... Removing old gcc doc directory. Unpacking gcc (4:6.1.1-1ubuntu2) over (4:5.3.1-1ubuntu1) ... Selecting previously unselected package libstdc++-6-dev:armhf. Preparing to unpack .../libstdc++-6-dev_6.2.0-3ubuntu15_armhf.deb ... Unpacking libstdc++-6-dev:armhf (6.2.0-3ubuntu15) ... Selecting previously unselected package g++-6. Preparing to unpack .../g++-6_6.2.0-3ubuntu15_armhf.deb ... Unpacking g++-6 (6.2.0-3ubuntu15) ... Preparing to unpack .../g++_4%3a6.1.1-1ubuntu2_armhf.deb ... Unpacking g++ (4:6.1.1-1ubuntu2) over (4:5.3.1-1ubuntu1) ... Preparing to unpack .../libusb-0.1-4_2%3a0.1.12-30_armhf.deb ... Unpacking libusb-0.1-4:armhf (2:0.1.12-30) over (2:0.1.12-28) ... Preparing to unpack .../optipng_0.7.6-1build1_armhf.deb ... Unpacking optipng (0.7.6-1build1) over (0.7.6-1) ... Preparing to unpack .../pkgbinarymangler_130_all.deb ... Unpacking pkgbinarymangler (130) over (129) ... Preparing to unpack .../policyrcd-script-zg2_0.1-3_all.deb ... Unpacking policyrcd-script-zg2 (0.1-3) over (0.1-2) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Processing triggers for systemd (231-6) ... Setting up libc-dev-bin (2.24-0ubuntu1) ... Setting up linux-libc-dev:armhf (4.4.0-9136.55) ... Setting up libc6-dev:armhf (2.24-0ubuntu1) ... Setting up bzip2 (1.0.6-8build1) ... Setting up perl-modules-5.22 (5.22.2-3) ... Setting up libgdbm3:armhf (1.8.3-14) ... Setting up libperl5.22:armhf (5.22.2-3) ... Setting up perl (5.22.2-3) ... Setting up sysvinit-utils (2.88dsf-59.8git1) ... Setting up libncurses5:armhf (6.0+20160625-1ubuntu1) ... Setting up libprocps6:armhf (2:3.3.12-1ubuntu2) ... Setting up procps (2:3.3.12-1ubuntu2) ... Installing new version of config file /etc/init.d/procps ... Installing new version of config file /etc/sysctl.conf ... Setting up tzdata (2016f-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Sep 17 18:07:22 UTC 2016. Universal Time is now: Sat Sep 17 18:07:22 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up dmsetup (2:1.02.130-1ubuntu1) ... Setting up libreadline6:armhf (6.3-8ubuntu8) ... Setting up libslang2:armhf (2.3.0-2.3ubuntu1) ... Setting up libssl1.0.0:armhf (1.0.2g-1ubuntu8) ... Setting up xz-utils (5.1.1alpha+20120614-2.1ubuntu1) ... Setting up libgmp10:armhf (2:6.1.1+dfsg-1) ... Setting up libp11-kit0:armhf (0.23.2-5) ... Setting up libtasn1-6:armhf (4.9-4) ... Setting up libgnutls30:armhf (3.5.3-4ubuntu1) ... Setting up libkrb5support0:armhf (1.14.3+dfsg-2) ... Setting up libk5crypto3:armhf (1.14.3+dfsg-2) ... Setting up libkeyutils1:armhf (1.5.9-9ubuntu1) ... Setting up libkrb5-3:armhf (1.14.3+dfsg-2) ... Setting up libgssapi-krb5-2:armhf (1.14.3+dfsg-2) ... Setting up libsasl2-modules-db:armhf (2.1.26.dfsg1-15) ... Setting up libsasl2-2:armhf (2.1.26.dfsg1-15) ... Setting up libldap-2.4-2:armhf (2.4.42+dfsg-2ubuntu4) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ... Setting up libcurl3-gnutls:armhf (7.50.1-1ubuntu1) ... Setting up apt-transport-https (1.3~rc4ubuntu1) ... Setting up libpng16-16:armhf (1.6.25-1) ... Setting up openssl (1.0.2g-1ubuntu8) ... Setting up binutils (2.27-8ubuntu1) ... Setting up libisl15:armhf (0.17.1-1) ... Setting up libmpfr4:armhf (3.1.4-2) ... Setting up cpp-6 (6.2.0-3ubuntu15) ... Setting up cpp (4:6.1.1-1ubuntu2) ... Setting up libgomp1:armhf (6.2.0-3ubuntu15) ... Setting up libatomic1:armhf (6.2.0-3ubuntu15) ... Setting up gcc-5-base:armhf (5.4.1-2ubuntu1) ... Setting up libasan2:armhf (5.4.1-2ubuntu1) ... Setting up libubsan0:armhf (6.2.0-3ubuntu15) ... Setting up cpp-5 (5.4.1-2ubuntu1) ... Setting up libcc1-0:armhf (6.2.0-3ubuntu15) ... Setting up libgcc-5-dev:armhf (5.4.1-2ubuntu1) ... Setting up gcc-5 (5.4.1-2ubuntu1) ... Setting up libstdc++-5-dev:armhf (5.4.1-2ubuntu1) ... Setting up g++-5 (5.4.1-2ubuntu1) ... Setting up libdpkg-perl (1.18.10ubuntu1) ... Setting up make (4.1-9) ... Setting up dpkg-dev (1.18.10ubuntu1) ... Setting up libfakeroot:armhf (1.21-1ubuntu2) ... Setting up fakeroot (1.21-1ubuntu2) ... Setting up libasan3:armhf (6.2.0-3ubuntu15) ... Setting up libgcc-6-dev:armhf (6.2.0-3ubuntu15) ... Setting up gcc-6 (6.2.0-3ubuntu15) ... Setting up gcc (4:6.1.1-1ubuntu2) ... Setting up libstdc++-6-dev:armhf (6.2.0-3ubuntu15) ... Setting up g++-6 (6.2.0-3ubuntu15) ... Setting up g++ (4:6.1.1-1ubuntu2) ... Setting up libusb-0.1-4:armhf (2:0.1.12-30) ... Setting up optipng (0.7.6-1build1) ... Setting up pkgbinarymangler (130) ... Setting up policyrcd-script-zg2 (0.1-3) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Processing triggers for systemd (231-6) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-10920990', 'armhf', 'yakkety-proposed', '-c', 'chroot:autobuild', '--arch=armhf', '--dist=yakkety-proposed', '--purge=never', '--nolog', 'mothur_1.38.0-1build2.dsc'] Initiating build PACKAGEBUILD-10920990 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.2.0-42-generic #49-Ubuntu SMP Tue Jun 28 21:24:20 UTC 2016 armv7l sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bos01-arm64-028.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ mothur 1.38.0-1build2 (armhf) 17 Sep 2016 18:07 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: mothur Version: 1.38.0-1build2 Source Version: 1.38.0-1build2 Distribution: yakkety-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/mothur-oq9s1m/mothur-1.38.0' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/mothur-oq9s1m' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-10920990/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── mothur_1.38.0-1build2.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-qNadlF/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-qNadlF/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-qNadlF/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-qNadlF/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-qNadlF/apt_archive ./ Sources [208 B] Get:5 copy:/«BUILDDIR»/resolver-qNadlF/apt_archive ./ Packages [526 B] Fetched 2853 B in 0s (167 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-qNadlF/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-5 libprocps4 libstdc++-5-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 770 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-qNadlF/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 770 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12968 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), libreadline-dev, gfortran, libopenmpi-dev, zlib1g-dev, libboost-iostreams-dev Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), libreadline-dev, gfortran, libopenmpi-dev, zlib1g-dev, libboost-iostreams-dev dpkg-deb: building package 'sbuild-build-depends-mothur-dummy' in '/«BUILDDIR»/resolver-kXJWq2/apt_archive/sbuild-build-depends-mothur-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-kXJWq2/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-kXJWq2/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-kXJWq2/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-kXJWq2/apt_archive ./ Sources [458 B] Get:5 copy:/«BUILDDIR»/resolver-kXJWq2/apt_archive ./ Packages [725 B] Fetched 3302 B in 0s (186 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-kXJWq2/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install mothur build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-5 libprocps4 Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base gfortran gfortran-6 groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-iostreams-dev libboost-iostreams1.61-dev libboost-iostreams1.61.0 libboost-regex1.61-dev libboost-regex1.61.0 libboost1.61-dev libcroco3 libfile-stripnondeterminism-perl libgfortran-6-dev libgfortran3 libglib2.0-0 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu-dev libicu57 libltdl-dev libltdl7 libmagic1 libnl-3-200 libnl-route-3-200 libopenmpi-dev libopenmpi1.10 libpciaccess0 libpipeline1 libreadline-dev libsigsegv2 libtimedate-perl libtinfo-dev libtool libunistring0 libxml2 m4 man-db ocl-icd-libopencl1 openmpi-common po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-6-multilib gfortran-6-doc libgfortran3-dbg libcoarrays-dev groff libboost1.61-doc libboost-atomic1.61-dev libboost-chrono1.61-dev libboost-context1.61-dev libboost-coroutine1.61-dev libboost-date-time1.61-dev libboost-exception1.61-dev libboost-filesystem1.61-dev libboost-graph1.61-dev libboost-graph-parallel1.61-dev libboost-locale1.61-dev libboost-log1.61-dev libboost-math1.61-dev libboost-mpi1.61-dev libboost-mpi-python1.61-dev libboost-program-options1.61-dev libboost-python1.61-dev libboost-random1.61-dev libboost-serialization1.61-dev libboost-signals1.61-dev libboost-system1.61-dev libboost-test1.61-dev libboost-thread1.61-dev libboost-timer1.61-dev libboost-wave1.61-dev libboost1.61-tools-dev libmpfrc++-dev libntl-dev libhwloc-contrib-plugins icu-doc libtool-doc opennmpi-doc pciutils readline-doc gcj-jdk less www-browser opencl-icd libmail-box-perl Recommended packages: curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs openmpi-bin xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base gfortran gfortran-6 groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-iostreams-dev libboost-iostreams1.61-dev libboost-iostreams1.61.0 libboost-regex1.61-dev libboost-regex1.61.0 libboost1.61-dev libcroco3 libfile-stripnondeterminism-perl libgfortran-6-dev libgfortran3 libglib2.0-0 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu-dev libicu57 libltdl-dev libltdl7 libmagic1 libnl-3-200 libnl-route-3-200 libopenmpi-dev libopenmpi1.10 libpciaccess0 libpipeline1 libreadline-dev libsigsegv2 libtimedate-perl libtinfo-dev libtool libunistring0 libxml2 m4 man-db ocl-icd-libopencl1 openmpi-common po-debconf sbuild-build-depends-mothur-dummy zlib1g-dev 0 upgraded, 58 newly installed, 0 to remove and 0 not upgraded. Need to get 71.8 MB of archives. After this operation, 376 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-mothur-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-kXJWq2/apt_archive ./ sbuild-build-depends-mothur-dummy 0.invalid.0 [966 B] Get:2 http://ftpmaster.internal/ubuntu yakkety/main armhf groff-base armhf 1.22.3-8 [1013 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main armhf bsdmainutils armhf 9.0.6ubuntu3 [169 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main armhf libpipeline1 armhf 1.4.1-2 [21.0 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main armhf man-db armhf 2.7.5-1 [836 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main armhf libunistring0 armhf 0.9.3-5.2ubuntu1 [250 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main armhf libmagic1 armhf 1:5.28-2ubuntu1 [229 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main armhf file armhf 1:5.28-2ubuntu1 [21.5 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main armhf gettext-base armhf 0.19.8.1-1ubuntu2 [45.0 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main armhf libglib2.0-0 armhf 2.49.6-1 [998 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main armhf libicu57 armhf 57.1-4 [7424 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main armhf libxml2 armhf 2.9.4+dfsg1-1 [605 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main armhf libsigsegv2 armhf 2.10-5 [13.3 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main armhf m4 armhf 1.4.17-5 [179 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety-proposed/main armhf autoconf all 2.69-10 [321 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety-proposed/main armhf autotools-dev all 20160430.1 [39.6 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main armhf automake all 1:1.15-4ubuntu1 [510 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main armhf autopoint all 0.19.8.1-1ubuntu2 [412 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main armhf libtool all 2.4.6-1 [194 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main armhf dh-autoreconf all 12 [15.8 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main armhf libarchive-zip-perl all 1.59-1 [84.0 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main armhf libfile-stripnondeterminism-perl all 0.028-1 [12.5 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main armhf libtimedate-perl all 2.3000-2 [37.5 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main armhf dh-strip-nondeterminism all 0.028-1 [4820 B] Get:25 http://ftpmaster.internal/ubuntu yakkety/main armhf libcroco3 armhf 0.6.11-1 [70.0 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main armhf gettext armhf 0.19.8.1-1ubuntu2 [1016 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main armhf intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety/main armhf po-debconf all 1.0.19 [234 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main armhf debhelper all 10ubuntu1 [731 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main armhf libgfortran3 armhf 6.2.0-3ubuntu15 [177 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main armhf libgfortran-6-dev armhf 6.2.0-3ubuntu15 [211 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main armhf gfortran-6 armhf 6.2.0-3ubuntu15 [29.0 MB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main armhf gfortran armhf 4:6.1.1-1ubuntu2 [1274 B] Get:34 http://ftpmaster.internal/ubuntu yakkety/main armhf icu-devtools armhf 57.1-4 [148 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety/main armhf libboost1.61-dev armhf 1.61.0+dfsg-2.1 [6821 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/main armhf libboost-regex1.61.0 armhf 1.61.0+dfsg-2.1 [215 kB] Get:37 http://ftpmaster.internal/ubuntu yakkety/main armhf libicu-dev armhf 57.1-4 [15.7 MB] Get:38 http://ftpmaster.internal/ubuntu yakkety/universe armhf libboost-regex1.61-dev armhf 1.61.0+dfsg-2.1 [304 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/main armhf libboost-iostreams1.61.0 armhf 1.61.0+dfsg-2.1 [26.7 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety/universe armhf libboost-iostreams1.61-dev armhf 1.61.0+dfsg-2.1 [33.9 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/universe armhf libboost-iostreams-dev armhf 1.61.0.2 [2854 B] Get:42 http://ftpmaster.internal/ubuntu yakkety/main armhf libltdl7 armhf 2.4.6-1 [35.8 kB] Get:43 http://ftpmaster.internal/ubuntu yakkety/main armhf libltdl-dev armhf 2.4.6-1 [159 kB] Get:44 http://ftpmaster.internal/ubuntu yakkety/main armhf libnl-3-200 armhf 3.2.27-1 [44.9 kB] Get:45 http://ftpmaster.internal/ubuntu yakkety/main armhf libnl-route-3-200 armhf 3.2.27-1 [104 kB] Get:46 http://ftpmaster.internal/ubuntu yakkety/main armhf libpciaccess0 armhf 0.13.4-1 [15.8 kB] Get:47 http://ftpmaster.internal/ubuntu yakkety/main armhf libtinfo-dev armhf 6.0+20160625-1ubuntu1 [66.4 kB] Get:48 http://ftpmaster.internal/ubuntu yakkety-proposed/main armhf libreadline-dev armhf 7.0-0ubuntu2 [113 kB] Get:49 http://ftpmaster.internal/ubuntu yakkety/universe armhf openmpi-common all 1.10.3-3ubuntu2 [131 kB] Get:50 http://ftpmaster.internal/ubuntu yakkety/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2ubuntu5 [161 kB] Get:51 http://ftpmaster.internal/ubuntu yakkety/universe armhf libhwloc5 armhf 1.11.3-2 [80.4 kB] Get:52 http://ftpmaster.internal/ubuntu yakkety/universe armhf libhwloc-dev armhf 1.11.3-2 [140 kB] Get:53 http://ftpmaster.internal/ubuntu yakkety/main armhf ocl-icd-libopencl1 armhf 2.2.9-1 [28.3 kB] Get:54 http://ftpmaster.internal/ubuntu yakkety/universe armhf libhwloc-plugins armhf 1.11.3-2 [10.7 kB] Get:55 http://ftpmaster.internal/ubuntu yakkety/main armhf libibverbs1 armhf 1.2.0-2ubuntu1 [26.0 kB] Get:56 http://ftpmaster.internal/ubuntu yakkety/main armhf libibverbs-dev armhf 1.2.0-2ubuntu1 [81.5 kB] Get:57 http://ftpmaster.internal/ubuntu yakkety/universe armhf libopenmpi1.10 armhf 1.10.3-3ubuntu2 [1873 kB] Get:58 http://ftpmaster.internal/ubuntu yakkety/universe armhf libopenmpi-dev armhf 1.10.3-3ubuntu2 [534 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 71.8 MB in 3s (19.2 MB/s) 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Setting up libboost-iostreams1.61.0:armhf (1.61.0+dfsg-2.1) ... Setting up libgfortran-6-dev:armhf (6.2.0-3ubuntu15) ... Setting up libtinfo-dev:armhf (6.0+20160625-1ubuntu1) ... Setting up gettext-base (0.19.8.1-1ubuntu2) ... Setting up libpipeline1:armhf (1.4.1-2) ... Setting up m4 (1.4.17-5) ... Setting up libicu57:armhf (57.1-4) ... Setting up libboost1.61-dev:armhf (1.61.0+dfsg-2.1) ... Setting up libxml2:armhf (2.9.4+dfsg1-1) ... Setting up libmagic1:armhf (1:5.28-2ubuntu1) ... Setting up libcroco3:armhf (0.6.11-1) ... Setting up openmpi-common (1.10.3-3ubuntu2) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... Setting up autotools-dev (20160430.1) ... Setting up libunistring0:armhf (0.9.3-5.2ubuntu1) ... Setting up libltdl7:armhf (2.4.6-1) ... Setting up libreadline-dev:armhf (7.0-0ubuntu2) ... Setting up libpciaccess0:armhf (0.13.4-1) ... Setting up icu-devtools (57.1-4) ... Setting up ocl-icd-libopencl1:armhf (2.2.9-1) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:armhf (3.2.27-1) ... Setting up autopoint (0.19.8.1-1ubuntu2) ... Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2ubuntu5) ... Setting up libfile-stripnondeterminism-perl (0.028-1) ... Setting up gfortran-6 (6.2.0-3ubuntu15) ... Setting up libltdl-dev:armhf (2.4.6-1) ... Setting up libboost-regex1.61.0:armhf (1.61.0+dfsg-2.1) ... Setting up gettext (0.19.8.1-1ubuntu2) ... Setting up libnl-route-3-200:armhf (3.2.27-1) ... Setting up autoconf (2.69-10) ... Setting up libicu-dev (57.1-4) ... Setting up file (1:5.28-2ubuntu1) ... Setting up libhwloc5:armhf (1.11.3-2) ... Setting up libhwloc-plugins (1.11.3-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libboost-regex1.61-dev:armhf (1.61.0+dfsg-2.1) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-1) ... Setting up gfortran (4:6.1.1-1ubuntu2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libibverbs1 (1.2.0-2ubuntu1) ... Setting up libboost-iostreams1.61-dev:armhf (1.61.0+dfsg-2.1) ... Setting up po-debconf (1.0.19) ... Setting up libhwloc-dev:armhf (1.11.3-2) ... Setting up libopenmpi1.10 (1.10.3-3ubuntu2) ... Setting up libboost-iostreams-dev:armhf (1.61.0.2) ... Setting up libibverbs-dev (1.2.0-2ubuntu1) ... Setting up libopenmpi-dev (1.10.3-3ubuntu2) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up dh-autoreconf (12) ... Setting up dh-strip-nondeterminism (0.028-1) ... Setting up debhelper (10ubuntu1) ... Setting up sbuild-build-depends-mothur-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-0ubuntu1) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 4.2.0-42-generic arm64 (armv7l) Toolchain package versions: binutils_2.27-8ubuntu1 dpkg-dev_1.18.10ubuntu1 g++-5_5.4.1-2ubuntu1 g++-6_6.2.0-3ubuntu15 gcc-5_5.4.1-2ubuntu1 gcc-6_6.2.0-3ubuntu15 libc6-dev_2.24-0ubuntu1 libstdc++-5-dev_5.4.1-2ubuntu1 libstdc++-6-dev_6.2.0-3ubuntu15 libstdc++6_6.2.0-3ubuntu15 linux-libc-dev_4.4.0-9136.55 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.3~rc4ubuntu1 apt-transport-https_1.3~rc4ubuntu1 autoconf_2.69-10 automake_1:1.15-4ubuntu1 autopoint_0.19.8.1-1ubuntu2 autotools-dev_20160430.1 base-files_9.6ubuntu4 base-passwd_3.5.40 bash_4.3-15ubuntu1 binutils_2.27-8ubuntu1 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.28.2-1ubuntu1 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20160104ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:6.1.1-1ubuntu2 cpp-5_5.4.1-2ubuntu1 cpp-6_6.2.0-3ubuntu15 dash_0.5.8-2.3ubuntu1 debconf_1.5.59ubuntu1 debhelper_10ubuntu1 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.028-1 diffutils_1:3.3-3 dmsetup_2:1.02.130-1ubuntu1 dpkg_1.18.10ubuntu1 dpkg-dev_1.18.10ubuntu1 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 fakeroot_1.21-1ubuntu2 file_1:5.28-2ubuntu1 findutils_4.6.0+git+20160703-2 g++_4:6.1.1-1ubuntu2 g++-5_5.4.1-2ubuntu1 g++-6_6.2.0-3ubuntu15 gcc_4:6.1.1-1ubuntu2 gcc-5_5.4.1-2ubuntu1 gcc-5-base_5.4.1-2ubuntu1 gcc-6_6.2.0-3ubuntu15 gcc-6-base_6.2.0-3ubuntu15 gettext_0.19.8.1-1ubuntu2 gettext-base_0.19.8.1-1ubuntu2 gfortran_4:6.1.1-1ubuntu2 gfortran-6_6.2.0-3ubuntu15 gnupg_2.1.15-1ubuntu3 gnupg-agent_2.1.15-1ubuntu3 gpgv_2.1.15-1ubuntu3 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-4ubuntu1 hostname_3.18 icu-devtools_57.1-4 init_1.44 init-system-helpers_1.44 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-4ubuntu4 libapt-pkg5.0_1.3~rc4ubuntu1 libarchive-zip-perl_1.59-1 libasan2_5.4.1-2ubuntu1 libasan3_6.2.0-3ubuntu15 libasn1-8-heimdal_1.7~git20150920+dfsg-4ubuntu1 libassuan0_2.4.3-1 libatomic1_6.2.0-3ubuntu15 libattr1_1:2.4.47-2 libaudit-common_1:2.6.6-1ubuntu1 libaudit1_1:2.6.6-1ubuntu1 libblkid1_2.28.2-1ubuntu1 libboost-iostreams-dev_1.61.0.2 libboost-iostreams1.61-dev_1.61.0+dfsg-2.1 libboost-iostreams1.61.0_1.61.0+dfsg-2.1 libboost-regex1.61-dev_1.61.0+dfsg-2.1 libboost-regex1.61.0_1.61.0+dfsg-2.1 libboost1.61-dev_1.61.0+dfsg-2.1 libbz2-1.0_1.0.6-8build1 libc-bin_2.24-0ubuntu1 libc-dev-bin_2.24-0ubuntu1 libc6_2.24-0ubuntu1 libc6-dev_2.24-0ubuntu1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.2.0-3ubuntu15 libcomerr2_1.43.1-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.50.1-1ubuntu1 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.130-1ubuntu1 libdpkg-perl_1.18.10ubuntu1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.28.2-1ubuntu1 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.028-1 libgcc-5-dev_5.4.1-2ubuntu1 libgcc-6-dev_6.2.0-3ubuntu15 libgcc1_1:6.2.0-3ubuntu15 libgcrypt20_1.7.2-2ubuntu1 libgdbm3_1.8.3-14 libgfortran-6-dev_6.2.0-3ubuntu15 libgfortran3_6.2.0-3ubuntu15 libglib2.0-0_2.49.6-1 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.5.3-4ubuntu1 libgomp1_6.2.0-3ubuntu15 libgpg-error0_1.24-1 libgssapi-krb5-2_1.14.3+dfsg-2 libgssapi3-heimdal_1.7~git20150920+dfsg-4ubuntu1 libhcrypto4-heimdal_1.7~git20150920+dfsg-4ubuntu1 libheimbase1-heimdal_1.7~git20150920+dfsg-4ubuntu1 libheimntlm0-heimdal_1.7~git20150920+dfsg-4ubuntu1 libhogweed4_3.2-1 libhwloc-dev_1.11.3-2 libhwloc-plugins_1.11.3-2 libhwloc5_1.11.3-2 libhx509-5-heimdal_1.7~git20150920+dfsg-4ubuntu1 libibverbs-dev_1.2.0-2ubuntu1 libibverbs1_1.2.0-2ubuntu1 libicu-dev_57.1-4 libicu57_57.1-4 libidn11_1.33-1 libip4tc0_1.6.0-3ubuntu2 libisl15_0.17.1-1 libk5crypto3_1.14.3+dfsg-2 libkeyutils1_1.5.9-9ubuntu1 libkmod2_22-1.1ubuntu1 libkrb5-26-heimdal_1.7~git20150920+dfsg-4ubuntu1 libkrb5-3_1.14.3+dfsg-2 libkrb5support0_1.14.3+dfsg-2 libksba8_1.3.4-4 libldap-2.4-2_2.4.42+dfsg-2ubuntu4 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 libltdl-dev_2.4.6-1 libltdl7_2.4.6-1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.1.1alpha+20120614-2.1ubuntu1 libmagic1_1:5.28-2ubuntu1 libmount1_2.28.2-1ubuntu1 libmpc3_1.0.3-1 libmpfr4_3.1.4-2 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.2-1 libnl-3-200_3.2.27-1 libnl-route-3-200_3.2.27-1 libnpth0_1.2-3 libopenmpi-dev_1.10.3-3ubuntu2 libopenmpi1.10_1.10.3-3ubuntu2 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpciaccess0_0.13.4-1 libpcre3_2:8.39-2 libperl5.22_5.22.2-3 libpipeline1_1.4.1-2 libpng12-0_1.2.54-1ubuntu1 libpng16-16_1.6.25-1 libprocps4_2:3.3.10-4ubuntu2 libprocps6_2:3.3.12-1ubuntu2 libreadline-dev_7.0-0ubuntu2 libreadline6_6.3-8ubuntu8 libreadline7_7.0-0ubuntu2 libroken18-heimdal_1.7~git20150920+dfsg-4ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2ubuntu2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3ubuntu1 libsmartcols1_2.28.2-1ubuntu1 libsqlite3-0_3.14.1-1build1 libss2_1.43.1-1 libssl1.0.0_1.0.2g-1ubuntu8 libstdc++-5-dev_5.4.1-2ubuntu1 libstdc++-6-dev_6.2.0-3ubuntu15 libstdc++6_6.2.0-3ubuntu15 libsystemd0_231-6 libtasn1-6_4.9-4 libtimedate-perl_2.3000-2 libtinfo-dev_6.0+20160625-1ubuntu1 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-1 libubsan0_6.2.0-3ubuntu15 libudev1_231-6 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28.2-1ubuntu1 libwind0-heimdal_1.7~git20150920+dfsg-4ubuntu1 libxml2_2.9.4+dfsg1-1 linux-libc-dev_4.4.0-9136.55 lockfile-progs_0.1.17 login_1:4.2-3.1ubuntu6 lsb-base_9.20160110ubuntu5 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.28.2-1ubuntu1 multiarch-support_2.24-0ubuntu1 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 ocl-icd-libopencl1_2.2.9-1 openmpi-common_1.10.3-3ubuntu2 openssl_1.0.2g-1ubuntu8 optipng_0.7.6-1build1 passwd_1:4.2-3.1ubuntu6 patch_2.7.5-1 perl_5.22.2-3 perl-base_5.22.2-3 perl-modules-5.22_5.22.2-3 pinentry-curses_0.9.7-5 pkg-create-dbgsym_0.72 pkgbinarymangler_130 po-debconf_1.0.19 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mothur-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 systemd_231-6 systemd-sysv_231-6 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1 tzdata_2016f-1 ubuntu-keyring_2016.09.01 util-linux_2.28.2-1ubuntu1 xz-utils_5.1.1alpha+20120614-2.1ubuntu1 zlib1g_1:1.2.8.dfsg-2ubuntu5 zlib1g-dev_1:1.2.8.dfsg-2ubuntu5 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Sat Sep 17 12:15:02 2016 UTC gpgv: using RSA key gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mothur_1.38.0-1build2.dsc dpkg-source: info: extracting mothur in mothur-1.38.0 dpkg-source: info: unpacking mothur_1.38.0.orig.tar.gz dpkg-source: info: unpacking mothur_1.38.0-1build2.debian.tar.xz dpkg-source: info: applying 0001-Fix-catchall-command.patch dpkg-source: info: applying 0002-Add-hardening-flags.patch dpkg-source: info: applying 0003-Fix-VERSION-variable-in-the-makefile.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: info: source package mothur dpkg-buildpackage: info: source version 1.38.0-1build2 dpkg-buildpackage: info: source distribution yakkety dpkg-source --before-build mothur-1.38.0 dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --parallel dh_testdir -O--parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/«PKGBUILDDIR»' rm -f mothur mothur-mpi make clean make[2]: Entering directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' ( cd source/uchime_src && rm -f *.o mk.stdout mk.stderr tmp.stderr ) make[1]: Leaving directory '/«PKGBUILDDIR»' dh_clean -O--parallel debian/rules build-arch dh build-arch --parallel dh_testdir -a -O--parallel dh_update_autotools_config -a -O--parallel dh_auto_configure -a -O--parallel debian/rules override_dh_auto_build make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_build -- 64BIT_VERSION=no USEMPI=yes make -j4 64BIT_VERSION=no USEMPI=yes make[2]: Entering directory '/«PKGBUILDDIR»' g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/progress.o source/progress.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/consensus.o source/consensus.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/optionparser.o source/optionparser.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/mothur.o source/mothur.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treenode.h:13, from source/datastructures/tree.h:13, from source/consensus.h:13, from source/consensus.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treenode.h:13, from source/datastructures/tree.h:13, from source/consensus.h:13, from source/consensus.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treenode.h:13, from source/datastructures/tree.h:13, from source/consensus.h:13, from source/consensus.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/progress.hpp:4, from source/progress.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/progress.hpp:4, from source/progress.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/progress.hpp:4, from source/progress.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothur.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothur.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothur.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/optionparser.h:15, from source/optionparser.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/optionparser.h:15, from source/optionparser.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/optionparser.h:15, from source/optionparser.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/mothur.cpp: In function ‘int main(int, char**)’: source/mothur.cpp:46:19: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system("clear"); ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/engine.o source/engine.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/venn.o source/venn.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/engine.hpp:15, from source/engine.cpp:15: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/engine.hpp:15, from source/engine.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/engine.hpp:15, from source/engine.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/linearalgebra.o source/linearalgebra.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/venn.h:12, from source/venn.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/venn.h:12, from source/venn.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/venn.h:12, from source/venn.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/linearalgebra.h:13, from source/linearalgebra.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/linearalgebra.h:13, from source/linearalgebra.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/linearalgebra.h:13, from source/linearalgebra.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/inputdata.o source/inputdata.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/gotohoverlap.o source/gotohoverlap.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/inputdata.h:4, from source/inputdata.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/inputdata.h:4, from source/inputdata.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/inputdata.h:4, from source/inputdata.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/gotohoverlap.cpp:21: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/gotohoverlap.cpp:21: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/gotohoverlap.cpp:21: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/clusterclassic.o source/clusterclassic.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/clusterclassic.h:5, from source/clusterclassic.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/clusterclassic.h:5, from source/clusterclassic.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/clusterclassic.h:5, from source/clusterclassic.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/vsearchfileparser.o source/vsearchfileparser.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/vsearchfileparser.h:12, from source/vsearchfileparser.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/vsearchfileparser.h:12, from source/vsearchfileparser.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/vsearchfileparser.h:12, from source/vsearchfileparser.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/slibshuff.o source/slibshuff.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/sharedutilities.o source/sharedutilities.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/slibshuff.h:13, from source/slibshuff.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/slibshuff.h:13, from source/slibshuff.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/slibshuff.h:13, from source/slibshuff.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/sharedutilities.h:12, from source/sharedutilities.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/sharedutilities.h:12, from source/sharedutilities.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/sharedutilities.h:12, from source/sharedutilities.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/singlelinkage.o source/singlelinkage.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/seqnoise.o source/seqnoise.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/singlelinkage.cpp:2: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/singlelinkage.cpp:2: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/singlelinkage.cpp:2: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/refchimeratest.o source/refchimeratest.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/seqnoise.h:22, from source/seqnoise.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/seqnoise.h:22, from source/seqnoise.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/seqnoise.h:22, from source/seqnoise.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/validparameter.o source/validparameter.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/refchimeratest.h:13, from source/refchimeratest.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/refchimeratest.h:13, from source/refchimeratest.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/refchimeratest.h:13, from source/refchimeratest.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/validparameter.h:13, from source/validparameter.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/validparameter.h:13, from source/validparameter.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/validparameter.h:13, from source/validparameter.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/rarefact.o source/rarefact.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/heatmap.o source/heatmap.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/rarefactioncurvedata.h:4, from source/rarefact.h:4, from source/rarefact.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/rarefactioncurvedata.h:4, from source/rarefact.h:4, from source/rarefact.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/rarefactioncurvedata.h:4, from source/rarefact.h:4, from source/rarefact.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/rabundvector.hpp:4, from source/heatmap.h:12, from source/heatmap.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/rabundvector.hpp:4, from source/heatmap.h:12, from source/heatmap.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/rabundvector.hpp:4, from source/heatmap.h:12, from source/heatmap.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/heatmapsim.o source/heatmapsim.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedrabundvector.h:13, from source/heatmapsim.h:13, from source/heatmapsim.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedrabundvector.h:13, from source/heatmapsim.h:13, from source/heatmapsim.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedrabundvector.h:13, from source/heatmapsim.h:13, from source/heatmapsim.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/subsample.o source/subsample.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/subsample.h:12, from source/subsample.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/subsample.h:12, from source/subsample.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/subsample.h:12, from source/subsample.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/nast.o source/nast.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/completelinkage.o source/completelinkage.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/nast.cpp:18: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/nast.cpp:18: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/nast.cpp:18: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/completelinkage.cpp:2: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/completelinkage.cpp:2: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/completelinkage.cpp:2: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/trialSwap2.o source/trialSwap2.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/mothurout.o source/mothurout.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/trialswap2.h:13, from source/trialSwap2.cpp:1: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/trialswap2.h:13, from source/trialSwap2.cpp:1: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/trialswap2.h:13, from source/trialSwap2.cpp:1: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/averagelinkage.o source/averagelinkage.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/mothurout.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/mothurout.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/mothurout.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/randomnumber.o source/randomnumber.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/averagelinkage.cpp:5: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/averagelinkage.cpp:5: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/averagelinkage.cpp:5: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/mothurout.cpp: In member function ‘bool MothurOut::mkDir(std::__cxx11::string&)’: source/mothurout.cpp:904:45: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(makeDirectoryCommand.c_str()); ^ source/mothurout.cpp: In member function ‘int MothurOut::renameFile(std::__cxx11::string, std::__cxx11::string)’: source/mothurout.cpp:1400:27: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ^ source/mothurout.cpp:1404:26: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ^ source/mothurout.cpp: In member function ‘std::__cxx11::string MothurOut::sortFile(std::__cxx11::string, std::__cxx11::string)’: source/mothurout.cpp:1611:27: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/raredisplay.o source/raredisplay.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/randomnumber.h:16, from source/randomnumber.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/randomnumber.h:16, from source/randomnumber.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/randomnumber.h:16, from source/randomnumber.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/validcalculator.o source/validcalculator.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/raredisplay.h:4, from source/raredisplay.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/raredisplay.h:4, from source/raredisplay.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/raredisplay.h:4, from source/raredisplay.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/validcalculator.h:13, from source/validcalculator.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/validcalculator.h:13, from source/validcalculator.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/validcalculator.h:13, from source/validcalculator.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commandoptionparser.o source/commandoptionparser.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commandoptionparser.hpp:4, from source/commandoptionparser.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commandoptionparser.hpp:4, from source/commandoptionparser.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commandoptionparser.hpp:4, from source/commandoptionparser.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calcsparcc.o source/calcsparcc.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/randomnumber.h:16, from source/calcsparcc.h:16, from source/calcsparcc.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/randomnumber.h:16, from source/calcsparcc.h:16, from source/calcsparcc.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/randomnumber.h:16, from source/calcsparcc.h:16, from source/calcsparcc.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/myseqdist.o source/myseqdist.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/fileoutput.o source/fileoutput.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/myseqdist.h:14, from source/myseqdist.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/myseqdist.h:14, from source/myseqdist.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/myseqdist.h:14, from source/myseqdist.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/fileoutput.h:4, from source/fileoutput.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/fileoutput.h:4, from source/fileoutput.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/fileoutput.h:4, from source/fileoutput.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/rarecalc.o source/rarecalc.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/dlibshuff.o source/dlibshuff.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/rarecalc.h:14, from source/rarecalc.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/rarecalc.h:14, from source/rarecalc.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/rarecalc.h:14, from source/rarecalc.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/overlap.o source/overlap.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/dlibshuff.h:13, from source/dlibshuff.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/dlibshuff.h:13, from source/dlibshuff.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/dlibshuff.h:13, from source/dlibshuff.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/cluster.o source/cluster.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/overlap.cpp:16: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/overlap.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/overlap.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/libshuff.o source/libshuff.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/weightedlinkage.o source/weightedlinkage.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/cluster.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/cluster.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/cluster.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/libshuff.h:13, from source/libshuff.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/libshuff.h:13, from source/libshuff.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/libshuff.h:13, from source/libshuff.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/weightedlinkage.cpp:4: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/weightedlinkage.cpp:4: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/weightedlinkage.cpp:4: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/wilcox.o source/wilcox.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/nastreport.o source/nastreport.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/noalign.o source/noalign.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/wilcox.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/wilcox.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/wilcox.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/nastreport.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/nastreport.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/nastreport.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignment.hpp:16, from source/noalign.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignment.hpp:16, from source/noalign.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignment.hpp:16, from source/noalign.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/collect.o source/collect.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/needlemanoverlap.o source/needlemanoverlap.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/needlemanoverlap.cpp:20: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/needlemanoverlap.cpp:20: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/needlemanoverlap.cpp:20: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/collectorscurvedata.h:4, from source/collect.h:4, from source/collect.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/collectorscurvedata.h:4, from source/collect.h:4, from source/collect.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/collectorscurvedata.h:4, from source/collect.h:4, from source/collect.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/trimoligos.o source/trimoligos.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commandfactory.o source/commandfactory.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/trimoligos.h:13, from source/trimoligos.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/trimoligos.h:13, from source/trimoligos.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/trimoligos.h:13, from source/trimoligos.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commandfactory.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commandfactory.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commandfactory.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedthetayc.o source/calculators/sharedthetayc.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedthetayc.h:16, from source/calculators/sharedthetayc.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedthetayc.h:16, from source/calculators/sharedthetayc.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedthetayc.h:16, from source/calculators/sharedthetayc.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedmorisitahorn.o source/calculators/sharedmorisitahorn.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedmorisitahorn.h:13, from source/calculators/sharedmorisitahorn.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedmorisitahorn.h:13, from source/calculators/sharedmorisitahorn.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedmorisitahorn.h:13, from source/calculators/sharedmorisitahorn.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedkulczynski.o source/calculators/sharedkulczynski.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedkulczynski.h:13, from source/calculators/sharedkulczynski.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedkulczynski.h:13, from source/calculators/sharedkulczynski.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedkulczynski.h:13, from source/calculators/sharedkulczynski.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/qstat.o source/calculators/qstat.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/bergerparker.o source/calculators/bergerparker.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/qstat.h:11, from source/calculators/qstat.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/qstat.h:11, from source/calculators/qstat.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/qstat.h:11, from source/calculators/qstat.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedanderbergs.o source/calculators/sharedanderbergs.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/bergerparker.h:12, from source/calculators/bergerparker.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/bergerparker.h:12, from source/calculators/bergerparker.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/bergerparker.h:12, from source/calculators/bergerparker.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/smithwilson.o source/calculators/smithwilson.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/hamming.o source/calculators/hamming.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedanderbergs.h:12, from source/calculators/sharedanderbergs.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedanderbergs.h:12, from source/calculators/sharedanderbergs.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedanderbergs.h:12, from source/calculators/sharedanderbergs.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedjabund.o source/calculators/sharedjabund.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/smithwilson.h:13, from source/calculators/smithwilson.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/smithwilson.h:13, from source/calculators/smithwilson.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/smithwilson.h:13, from source/calculators/smithwilson.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/hamming.h:15, from source/calculators/hamming.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/hamming.h:15, from source/calculators/hamming.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/hamming.h:15, from source/calculators/hamming.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/shen.o source/calculators/shen.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjabund.h:16, from source/calculators/sharedjabund.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjabund.h:16, from source/calculators/sharedjabund.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjabund.h:16, from source/calculators/sharedjabund.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedjclass.o source/calculators/sharedjclass.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/canberra.o source/calculators/canberra.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shen.h:13, from source/calculators/shen.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shen.h:13, from source/calculators/shen.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shen.h:13, from source/calculators/shen.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjclass.h:15, from source/calculators/sharedjclass.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjclass.h:15, from source/calculators/sharedjclass.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjclass.h:15, from source/calculators/sharedjclass.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/canberra.h:15, from source/calculators/canberra.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/canberra.h:15, from source/calculators/canberra.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/canberra.h:15, from source/calculators/canberra.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/parsimony.o source/calculators/parsimony.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/coverage.o source/calculators/coverage.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/simpson.o source/calculators/simpson.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/treecalculator.h:13, from source/calculators/parsimony.h:14, from source/calculators/parsimony.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/treecalculator.h:13, from source/calculators/parsimony.h:14, from source/calculators/parsimony.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/treecalculator.h:13, from source/calculators/parsimony.h:14, from source/calculators/parsimony.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/coverage.h:13, from source/calculators/coverage.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/coverage.h:13, from source/calculators/coverage.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/coverage.h:13, from source/calculators/coverage.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/simpson.h:16, from source/calculators/simpson.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/simpson.h:16, from source/calculators/simpson.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/simpson.h:16, from source/calculators/simpson.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/mempearson.o source/calculators/mempearson.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/logsd.o source/calculators/logsd.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/mempearson.h:15, from source/calculators/mempearson.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/mempearson.h:15, from source/calculators/mempearson.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/mempearson.h:15, from source/calculators/mempearson.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/logsd.h:12, from source/calculators/logsd.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/logsd.h:12, from source/calculators/logsd.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/logsd.h:12, from source/calculators/logsd.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/goodscoverage.o source/calculators/goodscoverage.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/memchord.o source/calculators/memchord.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/manhattan.o source/calculators/manhattan.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/goodscoverage.h:12, from source/calculators/goodscoverage.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/goodscoverage.h:12, from source/calculators/goodscoverage.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/goodscoverage.h:12, from source/calculators/goodscoverage.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/memchord.h:14, from source/calculators/memchord.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/memchord.h:14, from source/calculators/memchord.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/memchord.h:14, from source/calculators/memchord.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/manhattan.h:14, from source/calculators/manhattan.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/manhattan.h:14, from source/calculators/manhattan.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/manhattan.h:14, from source/calculators/manhattan.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/geom.o source/calculators/geom.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/jackknife.o source/calculators/jackknife.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/whittaker.o source/calculators/whittaker.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/geom.h:12, from source/calculators/geom.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/geom.h:12, from source/calculators/geom.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/geom.h:12, from source/calculators/geom.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/jackknife.h:13, from source/calculators/jackknife.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/jackknife.h:13, from source/calculators/jackknife.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/jackknife.h:13, from source/calculators/jackknife.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/whittaker.h:11, from source/calculators/whittaker.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/whittaker.h:11, from source/calculators/whittaker.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/whittaker.h:11, from source/calculators/whittaker.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/efron.o source/calculators/efron.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/bootstrap.o source/calculators/bootstrap.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedsobs.o source/calculators/sharedsobs.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/efron.h:13, from source/calculators/efron.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/efron.h:13, from source/calculators/efron.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/efron.h:13, from source/calculators/efron.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/bootstrap.h:15, from source/calculators/bootstrap.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/bootstrap.h:15, from source/calculators/bootstrap.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/bootstrap.h:15, from source/calculators/bootstrap.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsobs.h:16, from source/calculators/sharedsobs.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsobs.h:16, from source/calculators/sharedsobs.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsobs.h:16, from source/calculators/sharedsobs.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedkstest.o source/calculators/sharedkstest.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/memeuclidean.o source/calculators/memeuclidean.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/invsimpson.o source/calculators/invsimpson.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedkstest.h:11, from source/calculators/sharedkstest.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedkstest.h:11, from source/calculators/sharedkstest.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedkstest.h:11, from source/calculators/sharedkstest.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/memeuclidean.h:14, from source/calculators/memeuclidean.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/memeuclidean.h:14, from source/calculators/memeuclidean.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/memeuclidean.h:14, from source/calculators/memeuclidean.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/invsimpson.h:15, from source/calculators/invsimpson.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/invsimpson.h:15, from source/calculators/invsimpson.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/invsimpson.h:15, from source/calculators/invsimpson.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedsorclass.o source/calculators/sharedsorclass.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/ace.o source/calculators/ace.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/prng.o source/calculators/prng.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/shannonrange.o source/calculators/shannonrange.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsorclass.h:16, from source/calculators/sharedsorclass.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsorclass.h:16, from source/calculators/sharedsorclass.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsorclass.h:16, from source/calculators/sharedsorclass.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/ace.h:16, from source/calculators/ace.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/ace.h:16, from source/calculators/ace.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/ace.h:16, from source/calculators/ace.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shannonrange.h:19, from source/calculators/shannonrange.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shannonrange.h:19, from source/calculators/shannonrange.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shannonrange.h:19, from source/calculators/shannonrange.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/npshannon.o source/calculators/npshannon.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/structeuclidean.o source/calculators/structeuclidean.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedchao1.o source/calculators/sharedchao1.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/npshannon.h:16, from source/calculators/npshannon.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/npshannon.h:16, from source/calculators/npshannon.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/npshannon.h:16, from source/calculators/npshannon.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structeuclidean.h:15, from source/calculators/structeuclidean.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structeuclidean.h:15, from source/calculators/structeuclidean.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structeuclidean.h:15, from source/calculators/structeuclidean.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedchao1.h:16, from source/calculators/sharedchao1.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedchao1.h:16, from source/calculators/sharedchao1.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedchao1.h:16, from source/calculators/sharedchao1.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedjest.o source/calculators/sharedjest.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/chao1.o source/calculators/chao1.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/simpsoneven.o source/calculators/simpsoneven.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedchao1.h:16, from source/calculators/sharedjest.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedchao1.h:16, from source/calculators/sharedjest.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedchao1.h:16, from source/calculators/sharedjest.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/chao1.h:12, from source/calculators/chao1.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/chao1.h:12, from source/calculators/chao1.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/chao1.h:12, from source/calculators/chao1.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedsorabund.o source/calculators/sharedsorabund.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/shannon.o source/calculators/shannon.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/simpsoneven.h:13, from source/calculators/simpsoneven.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/simpsoneven.h:13, from source/calculators/simpsoneven.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/simpsoneven.h:13, from source/calculators/simpsoneven.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/spearman.o source/calculators/spearman.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsorabund.h:16, from source/calculators/sharedsorabund.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsorabund.h:16, from source/calculators/sharedsorabund.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsorabund.h:16, from source/calculators/sharedsorabund.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shannon.h:16, from source/calculators/shannon.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shannon.h:16, from source/calculators/shannon.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shannon.h:16, from source/calculators/shannon.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/structchord.o source/calculators/structchord.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/shannoneven.o source/calculators/shannoneven.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/spearman.h:15, from source/calculators/spearman.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/spearman.h:15, from source/calculators/spearman.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/spearman.h:15, from source/calculators/spearman.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/venn.cpp: In member function ‘std::vector > Venn::getPic(std::vector, std::vector)’: source/venn.cpp:77:16: note: variable tracking size limit exceeded with -fvar-tracking-assignments, retrying without vector Venn::getPic(vector lookup, vector vCalcs) { ^~~~ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedace.o source/calculators/sharedace.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structchord.h:14, from source/calculators/structchord.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structchord.h:14, from source/calculators/structchord.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structchord.h:14, from source/calculators/structchord.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shannoneven.h:13, from source/calculators/shannoneven.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shannoneven.h:13, from source/calculators/shannoneven.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shannoneven.h:13, from source/calculators/shannoneven.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/bstick.o source/calculators/bstick.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedjackknife.o source/calculators/sharedjackknife.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedace.h:15, from source/calculators/sharedace.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedace.h:15, from source/calculators/sharedace.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedace.h:15, from source/calculators/sharedace.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/solow.o source/calculators/solow.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedjsd.o source/calculators/sharedjsd.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/bstick.h:11, from source/calculators/bstick.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/bstick.h:11, from source/calculators/bstick.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/bstick.h:11, from source/calculators/bstick.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjackknife.h:13, from source/calculators/sharedjackknife.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjackknife.h:13, from source/calculators/sharedjackknife.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjackknife.h:13, from source/calculators/sharedjackknife.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/solow.h:13, from source/calculators/solow.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/solow.h:13, from source/calculators/solow.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/solow.h:13, from source/calculators/solow.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedsobscollectsummary.o source/calculators/sharedsobscollectsummary.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/hellinger.o source/calculators/hellinger.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/odum.o source/calculators/odum.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjsd.h:12, from source/calculators/sharedjsd.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjsd.h:12, from source/calculators/sharedjsd.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjsd.h:12, from source/calculators/sharedjsd.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/structpearson.o source/calculators/structpearson.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsobscollectsummary.h:15, from source/calculators/sharedsobscollectsummary.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsobscollectsummary.h:15, from source/calculators/sharedsobscollectsummary.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsobscollectsummary.h:15, from source/calculators/sharedsobscollectsummary.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/hellinger.h:14, from source/calculators/hellinger.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/hellinger.h:14, from source/calculators/hellinger.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/hellinger.h:14, from source/calculators/hellinger.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/odum.h:15, from source/calculators/odum.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/odum.h:15, from source/calculators/odum.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/odum.h:15, from source/calculators/odum.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/heip.o source/calculators/heip.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structpearson.h:15, from source/calculators/structpearson.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structpearson.h:15, from source/calculators/structpearson.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structpearson.h:15, from source/calculators/structpearson.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/structchi2.o source/calculators/structchi2.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedlennon.o source/calculators/sharedlennon.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/uvest.o source/calculators/uvest.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/heip.h:13, from source/calculators/heip.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/heip.h:13, from source/calculators/heip.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/heip.h:13, from source/calculators/heip.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedlennon.h:14, from source/calculators/sharedlennon.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedlennon.h:14, from source/calculators/sharedlennon.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedlennon.h:14, from source/calculators/sharedlennon.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structchi2.h:14, from source/calculators/structchi2.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structchi2.h:14, from source/calculators/structchi2.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structchi2.h:14, from source/calculators/structchi2.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/memchi2.o source/calculators/memchi2.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/uvest.h:16, from source/calculators/uvest.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/uvest.h:16, from source/calculators/uvest.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/uvest.h:16, from source/calculators/uvest.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedthetan.o source/calculators/sharedthetan.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/unweighted.o source/calculators/unweighted.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/boneh.o source/calculators/boneh.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/memchi2.h:15, from source/calculators/memchi2.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/memchi2.h:15, from source/calculators/memchi2.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/memchi2.h:15, from source/calculators/memchi2.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedthetan.h:16, from source/calculators/sharedthetan.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedthetan.h:16, from source/calculators/sharedthetan.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedthetan.h:16, from source/calculators/sharedthetan.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/treecalculator.h:13, from source/calculators/unweighted.h:14, from source/calculators/unweighted.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/treecalculator.h:13, from source/calculators/unweighted.h:14, from source/calculators/unweighted.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/treecalculator.h:13, from source/calculators/unweighted.h:14, from source/calculators/unweighted.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/boneh.h:13, from source/calculators/boneh.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/boneh.h:13, from source/calculators/boneh.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/boneh.h:13, from source/calculators/boneh.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedsorest.o source/calculators/sharedsorest.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/speciesprofile.o source/calculators/speciesprofile.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/soergel.o source/calculators/soergel.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsorest.h:16, from source/calculators/sharedsorest.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsorest.h:16, from source/calculators/sharedsorest.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsorest.h:16, from source/calculators/sharedsorest.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/speciesprofile.h:14, from source/calculators/speciesprofile.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/speciesprofile.h:14, from source/calculators/speciesprofile.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/speciesprofile.h:14, from source/calculators/speciesprofile.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/soergel.h:14, from source/calculators/soergel.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/soergel.h:14, from source/calculators/soergel.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/soergel.h:14, from source/calculators/soergel.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedkulczynskicody.o source/calculators/sharedkulczynskicody.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedmarczewski.o source/calculators/sharedmarczewski.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/structkulczynski.o source/calculators/structkulczynski.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedkulczynskicody.h:14, from source/calculators/sharedkulczynskicody.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedkulczynskicody.h:14, from source/calculators/sharedkulczynskicody.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedkulczynskicody.h:14, from source/calculators/sharedkulczynskicody.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedmarczewski.h:13, from source/calculators/sharedmarczewski.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedmarczewski.h:13, from source/calculators/sharedmarczewski.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedmarczewski.h:13, from source/calculators/sharedmarczewski.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structkulczynski.h:14, from source/calculators/structkulczynski.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structkulczynski.h:14, from source/calculators/structkulczynski.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structkulczynski.h:14, from source/calculators/structkulczynski.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedrjsd.o source/calculators/sharedrjsd.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/weighted.o source/calculators/weighted.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedbraycurtis.o source/calculators/sharedbraycurtis.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/gower.o source/calculators/gower.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedrjsd.h:12, from source/calculators/sharedrjsd.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedrjsd.h:12, from source/calculators/sharedrjsd.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedrjsd.h:12, from source/calculators/sharedrjsd.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/treecalculator.h:13, from source/calculators/weighted.h:14, from source/calculators/weighted.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/treecalculator.h:13, from source/calculators/weighted.h:14, from source/calculators/weighted.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/treecalculator.h:13, from source/calculators/weighted.h:14, from source/calculators/weighted.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedbraycurtis.h:11, from source/calculators/sharedbraycurtis.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedbraycurtis.h:11, from source/calculators/sharedbraycurtis.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedbraycurtis.h:11, from source/calculators/sharedbraycurtis.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/gower.h:14, from source/calculators/gower.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/gower.h:14, from source/calculators/gower.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/gower.h:14, from source/calculators/gower.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedochiai.o source/calculators/sharedochiai.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/calculator.o source/calculators/calculator.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/chimera/pintail.o source/chimera/pintail.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedochiai.h:12, from source/calculators/sharedochiai.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedochiai.h:12, from source/calculators/sharedochiai.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedochiai.h:12, from source/calculators/sharedochiai.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/calculator.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/calculator.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/calculator.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/chimera/myPerseus.o source/chimera/myPerseus.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/pintail.h:13, from source/chimera/pintail.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/pintail.h:13, from source/chimera/pintail.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/pintail.h:13, from source/chimera/pintail.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/chimera/bellerophon.o source/chimera/bellerophon.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/chimera/myPerseus.h:14, from source/chimera/myPerseus.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/chimera/myPerseus.h:14, from source/chimera/myPerseus.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/chimera/myPerseus.h:14, from source/chimera/myPerseus.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/bellerophon.h:14, from source/chimera/bellerophon.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/bellerophon.h:14, from source/chimera/bellerophon.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/bellerophon.h:14, from source/chimera/bellerophon.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/chimera/maligner.o source/chimera/maligner.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/decalc.h:12, from source/chimera/maligner.h:12, from source/chimera/maligner.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/decalc.h:12, from source/chimera/maligner.h:12, from source/chimera/maligner.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/decalc.h:12, from source/chimera/maligner.h:12, from source/chimera/maligner.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/chimera/chimeraslayer.o source/chimera/chimeraslayer.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/chimera/chimerarealigner.o source/chimera/chimerarealigner.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/chimeraslayer.h:14, from source/chimera/chimeraslayer.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/chimeraslayer.h:14, from source/chimera/chimeraslayer.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/chimeraslayer.h:14, from source/chimera/chimeraslayer.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/chimerarealigner.h:13, from source/chimera/chimerarealigner.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/chimerarealigner.h:13, from source/chimera/chimerarealigner.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/chimerarealigner.h:13, from source/chimera/chimerarealigner.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/chimera/slayer.o source/chimera/slayer.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/chimera/ccode.o source/chimera/ccode.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/chimera/slayer.h:13, from source/chimera/slayer.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/chimera/slayer.h:13, from source/chimera/slayer.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/chimera/slayer.h:13, from source/chimera/slayer.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/chimera/chimeracheckrdp.o source/chimera/chimeracheckrdp.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/ccode.h:13, from source/chimera/ccode.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/ccode.h:13, from source/chimera/ccode.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/ccode.h:13, from source/chimera/ccode.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/chimeracheckrdp.h:14, from source/chimera/chimeracheckrdp.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/chimeracheckrdp.h:14, from source/chimera/chimeracheckrdp.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/chimeracheckrdp.h:14, from source/chimera/chimeracheckrdp.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/chimera/mothurchimera.o source/chimera/mothurchimera.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/chimera/decalc.o source/chimera/decalc.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/classifier/classify.o source/classifier/classify.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/classifier/phylosummary.o source/classifier/phylosummary.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/mothurchimera.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/mothurchimera.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/mothurchimera.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/decalc.h:12, from source/chimera/decalc.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/decalc.h:12, from source/chimera/decalc.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/decalc.h:12, from source/chimera/decalc.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/classify.h:16, from source/classifier/classify.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/classify.h:16, from source/classifier/classify.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/classify.h:16, from source/classifier/classify.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/phylosummary.h:13, from source/classifier/phylosummary.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/phylosummary.h:13, from source/classifier/phylosummary.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/phylosummary.h:13, from source/classifier/phylosummary.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/classifier/taxonomyequalizer.o source/classifier/taxonomyequalizer.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/taxonomyequalizer.h:14, from source/classifier/taxonomyequalizer.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/taxonomyequalizer.h:14, from source/classifier/taxonomyequalizer.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/taxonomyequalizer.h:14, from source/classifier/taxonomyequalizer.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/classifier/kmernode.o source/classifier/kmernode.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/classifier/phylotree.o source/classifier/phylotree.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/kmernode.h:14, from source/classifier/kmernode.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/kmernode.h:14, from source/classifier/kmernode.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/kmernode.h:14, from source/classifier/kmernode.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/phylotree.h:13, from source/classifier/phylotree.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/phylotree.h:13, from source/classifier/phylotree.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/phylotree.h:13, from source/classifier/phylotree.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/classifier/aligntree.o source/classifier/aligntree.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/classifier/kmertree.o source/classifier/kmertree.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/classifier/knn.o source/classifier/knn.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/alignnode.h:13, from source/classifier/aligntree.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/alignnode.h:13, from source/classifier/aligntree.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/alignnode.h:13, from source/classifier/aligntree.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/kmernode.h:14, from source/classifier/kmertree.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/kmernode.h:14, from source/classifier/kmertree.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/kmernode.h:14, from source/classifier/kmertree.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/knn.h:13, from source/classifier/knn.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/knn.h:13, from source/classifier/knn.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/knn.h:13, from source/classifier/knn.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/classifier/alignnode.o source/classifier/alignnode.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/classifier/bayesian.o source/classifier/bayesian.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/classifier/taxonomynode.o source/classifier/taxonomynode.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/clearcut/distclearcut.o source/clearcut/distclearcut.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/alignnode.h:13, from source/classifier/alignnode.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/alignnode.h:13, from source/classifier/alignnode.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/alignnode.h:13, from source/classifier/alignnode.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/clearcut/clearcut.o source/clearcut/clearcut.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/bayesian.h:13, from source/classifier/bayesian.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/bayesian.h:13, from source/classifier/bayesian.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/bayesian.h:13, from source/classifier/bayesian.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/taxonomynode.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/taxonomynode.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/taxonomynode.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/clearcut/fasta.o source/clearcut/fasta.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/clearcut/dmat.o source/clearcut/dmat.cpp source/clearcut/dmat.cpp: In function ‘DMAT* NJ_parse_distance_matrix(NJ_ARGS*)’: source/clearcut/dmat.cpp:476:36: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%ld\n", &dmat->ntaxa); ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/clearcut/getopt_long.o source/clearcut/getopt_long.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/clearcut/cmdargs.o source/clearcut/cmdargs.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getotuscommand.o source/commands/getotuscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/listseqscommand.o source/commands/listseqscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/clusterdoturcommand.o source/commands/clusterdoturcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getotuscommand.h:15, from source/commands/getotuscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getotuscommand.h:15, from source/commands/getotuscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getotuscommand.h:15, from source/commands/getotuscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/listseqscommand.h:13, from source/commands/listseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/listseqscommand.h:13, from source/commands/listseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/listseqscommand.h:13, from source/commands/listseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clusterdoturcommand.h:13, from source/commands/clusterdoturcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clusterdoturcommand.h:13, from source/commands/clusterdoturcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clusterdoturcommand.h:13, from source/commands/clusterdoturcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getlistcountcommand.o source/commands/getlistcountcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getlistcountcommand.h:12, from source/commands/getlistcountcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getlistcountcommand.h:12, from source/commands/getlistcountcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getlistcountcommand.h:12, from source/commands/getlistcountcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/distancecommand.o source/commands/distancecommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/binsequencecommand.o source/commands/binsequencecommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/quitcommand.o source/commands/quitcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/distancecommand.h:13, from source/commands/distancecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/distancecommand.h:13, from source/commands/distancecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/distancecommand.h:13, from source/commands/distancecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/binsequencecommand.h:14, from source/commands/binsequencecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/binsequencecommand.h:14, from source/commands/binsequencecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/binsequencecommand.h:14, from source/commands/binsequencecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/commands/distancecommand.cpp: In member function ‘virtual int DistanceCommand::execute()’: source/commands/distancecommand.cpp:338:45: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(("gzip -v " + outputFile).c_str()); ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/quitcommand.h:12, from source/commands/quitcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/quitcommand.h:12, from source/commands/quitcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/quitcommand.h:12, from source/commands/quitcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/removegroupscommand.o source/commands/removegroupscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removegroupscommand.h:14, from source/commands/removegroupscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removegroupscommand.h:14, from source/commands/removegroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removegroupscommand.h:14, from source/commands/removegroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/indicatorcommand.o source/commands/indicatorcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/mgclustercommand.o source/commands/mgclustercommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/indicatorcommand.h:13, from source/commands/indicatorcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/indicatorcommand.h:13, from source/commands/indicatorcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/indicatorcommand.h:13, from source/commands/indicatorcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/seqsummarycommand.o source/commands/seqsummarycommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mgclustercommand.h:13, from source/commands/mgclustercommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mgclustercommand.h:13, from source/commands/mgclustercommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mgclustercommand.h:13, from source/commands/mgclustercommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/seqsummarycommand.h:13, from source/commands/seqsummarycommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/seqsummarycommand.h:13, from source/commands/seqsummarycommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/seqsummarycommand.h:13, from source/commands/seqsummarycommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/clusterfragmentscommand.o source/commands/clusterfragmentscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clusterfragmentscommand.h:14, from source/commands/clusterfragmentscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clusterfragmentscommand.h:14, from source/commands/clusterfragmentscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clusterfragmentscommand.h:14, from source/commands/clusterfragmentscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/treegroupscommand.o source/commands/treegroupscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/kruskalwalliscommand.o source/commands/kruskalwalliscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/treegroupscommand.h:13, from source/commands/treegroupscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/treegroupscommand.h:13, from source/commands/treegroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/treegroupscommand.h:13, from source/commands/treegroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/kruskalwalliscommand.h:11, from source/commands/kruskalwalliscommand.cpp:8: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/kruskalwalliscommand.h:11, from source/commands/kruskalwalliscommand.cpp:8: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/kruskalwalliscommand.h:11, from source/commands/kruskalwalliscommand.cpp:8: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getotulabelscommand.o source/commands/getotulabelscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getotulabelscommand.h:13, from source/commands/getotulabelscommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getotulabelscommand.h:13, from source/commands/getotulabelscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getotulabelscommand.h:13, from source/commands/getotulabelscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/removeseqscommand.o source/commands/removeseqscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removeseqscommand.h:13, from source/commands/removeseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removeseqscommand.h:13, from source/commands/removeseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removeseqscommand.h:13, from source/commands/removeseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/venncommand.o source/commands/venncommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/venncommand.h:12, from source/commands/venncommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/venncommand.h:12, from source/commands/venncommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/venncommand.h:12, from source/commands/venncommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/renameseqscommand.o source/commands/renameseqscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/renameseqscommand.h:12, from source/commands/renameseqscommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/renameseqscommand.h:12, from source/commands/renameseqscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/renameseqscommand.h:12, from source/commands/renameseqscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/makegroupcommand.o source/commands/makegroupcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/deuniqueseqscommand.o source/commands/deuniqueseqscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makegroupcommand.h:13, from source/commands/makegroupcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makegroupcommand.h:13, from source/commands/makegroupcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makegroupcommand.h:13, from source/commands/makegroupcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/unifracunweightedcommand.o source/commands/unifracunweightedcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/deuniqueseqscommand.h:12, from source/commands/deuniqueseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/deuniqueseqscommand.h:12, from source/commands/deuniqueseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/deuniqueseqscommand.h:12, from source/commands/deuniqueseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/unifracunweightedcommand.h:13, from source/commands/unifracunweightedcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/unifracunweightedcommand.h:13, from source/commands/unifracunweightedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/unifracunweightedcommand.h:13, from source/commands/unifracunweightedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/makefilecommand.o source/commands/makefilecommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getgroupscommand.o source/commands/getgroupscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/listotulabelscommand.o source/commands/listotulabelscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makefilecommand.h:12, from source/commands/makefilecommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makefilecommand.h:12, from source/commands/makefilecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makefilecommand.h:12, from source/commands/makefilecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getgroupscommand.h:14, from source/commands/getgroupscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getgroupscommand.h:14, from source/commands/getgroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getgroupscommand.h:14, from source/commands/getgroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/commands/makefilecommand.cpp: In member function ‘virtual int MakeFileCommand::execute()’: source/commands/makefilecommand.cpp:146:36: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(findCommand.c_str()); ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/listotulabelscommand.h:13, from source/commands/listotulabelscommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/listotulabelscommand.h:13, from source/commands/listotulabelscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/listotulabelscommand.h:13, from source/commands/listotulabelscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/sensspeccommand.o source/commands/sensspeccommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/summaryqualcommand.o source/commands/summaryqualcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/removerarecommand.o source/commands/removerarecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/sensspeccommand.h:14, from source/commands/sensspeccommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/sensspeccommand.h:14, from source/commands/sensspeccommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/sensspeccommand.h:14, from source/commands/sensspeccommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summaryqualcommand.h:14, from source/commands/summaryqualcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summaryqualcommand.h:14, from source/commands/summaryqualcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summaryqualcommand.h:14, from source/commands/summaryqualcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removerarecommand.h:14, from source/commands/removerarecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removerarecommand.h:14, from source/commands/removerarecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removerarecommand.h:14, from source/commands/removerarecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/unifracweightedcommand.o source/commands/unifracweightedcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/unifracweightedcommand.h:13, from source/commands/unifracweightedcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/unifracweightedcommand.h:13, from source/commands/unifracweightedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/unifracweightedcommand.h:13, from source/commands/unifracweightedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getcoremicrobiomecommand.o source/commands/getcoremicrobiomecommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/createdatabasecommand.o source/commands/createdatabasecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getcoremicrobiomecommand.h:14, from source/commands/getcoremicrobiomecommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getcoremicrobiomecommand.h:14, from source/commands/getcoremicrobiomecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getcoremicrobiomecommand.h:14, from source/commands/getcoremicrobiomecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/createdatabasecommand.h:12, from source/commands/createdatabasecommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/createdatabasecommand.h:12, from source/commands/createdatabasecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/createdatabasecommand.h:12, from source/commands/createdatabasecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/splitgroupscommand.o source/commands/splitgroupscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/splitgroupscommand.h:17, from source/commands/splitgroupscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/splitgroupscommand.h:17, from source/commands/splitgroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/splitgroupscommand.h:17, from source/commands/splitgroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/parselistscommand.o source/commands/parselistscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/parselistscommand.h:12, from source/commands/parselistscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/parselistscommand.h:12, from source/commands/parselistscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/parselistscommand.h:12, from source/commands/parselistscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/normalizesharedcommand.o source/commands/normalizesharedcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/heatmapsimcommand.o source/commands/heatmapsimcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/clustercommand.o source/commands/clustercommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/heatmapsimcommand.h:13, from source/commands/heatmapsimcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/heatmapsimcommand.h:13, from source/commands/heatmapsimcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/heatmapsimcommand.h:13, from source/commands/heatmapsimcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/normalizesharedcommand.h:13, from source/commands/normalizesharedcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/normalizesharedcommand.h:13, from source/commands/normalizesharedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/normalizesharedcommand.h:13, from source/commands/normalizesharedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clustercommand.h:12, from source/commands/clustercommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clustercommand.h:12, from source/commands/clustercommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clustercommand.h:12, from source/commands/clustercommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/commands/clustercommand.cpp: In member function ‘int ClusterCommand::vsearchDriver(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string)’: source/commands/clustercommand.cpp:573:38: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(commandString.c_str()); ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/degapseqscommand.o source/commands/degapseqscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/degapseqscommand.h:14, from source/commands/degapseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/degapseqscommand.h:14, from source/commands/degapseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/degapseqscommand.h:14, from source/commands/degapseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/summarytaxcommand.o source/commands/summarytaxcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/clustersplitcommand.o source/commands/clustersplitcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clustersplitcommand.h:13, from source/commands/clustersplitcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clustersplitcommand.h:13, from source/commands/clustersplitcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clustersplitcommand.h:13, from source/commands/clustersplitcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summarytaxcommand.h:13, from source/commands/summarytaxcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summarytaxcommand.h:13, from source/commands/summarytaxcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summarytaxcommand.h:13, from source/commands/summarytaxcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/systemcommand.o source/commands/systemcommand.cpp source/commands/clustersplitcommand.cpp: In member function ‘int ClusterSplitCommand::vsearchDriver(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, double)’: source/commands/clustersplitcommand.cpp:1502:38: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(commandString.c_str()); ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/systemcommand.h:13, from source/commands/systemcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/systemcommand.h:13, from source/commands/systemcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/systemcommand.h:13, from source/commands/systemcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/commands/systemcommand.cpp: In member function ‘virtual int SystemCommand::execute()’: source/commands/systemcommand.cpp:101:26: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/rarefactsharedcommand.o source/commands/rarefactsharedcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/trimseqscommand.o source/commands/trimseqscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/rarefactsharedcommand.h:12, from source/commands/rarefactsharedcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/rarefactsharedcommand.h:12, from source/commands/rarefactsharedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/rarefactsharedcommand.h:12, from source/commands/rarefactsharedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/trimseqscommand.h:13, from source/commands/trimseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/trimseqscommand.h:13, from source/commands/trimseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/trimseqscommand.h:13, from source/commands/trimseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/otuhierarchycommand.o source/commands/otuhierarchycommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/otuhierarchycommand.h:12, from source/commands/otuhierarchycommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/otuhierarchycommand.h:12, from source/commands/otuhierarchycommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/otuhierarchycommand.h:12, from source/commands/otuhierarchycommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getrelabundcommand.o source/commands/getrelabundcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getrelabundcommand.h:13, from source/commands/getrelabundcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getrelabundcommand.h:13, from source/commands/getrelabundcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getrelabundcommand.h:13, from source/commands/getrelabundcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/removelineagecommand.o source/commands/removelineagecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removelineagecommand.h:13, from source/commands/removelineagecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/chimeraccodecommand.o source/commands/chimeraccodecommand.cpp In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removelineagecommand.h:13, from source/commands/removelineagecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removelineagecommand.h:13, from source/commands/removelineagecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeraccodecommand.h:13, from source/commands/chimeraccodecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeraccodecommand.h:13, from source/commands/chimeraccodecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeraccodecommand.h:13, from source/commands/chimeraccodecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/chimerabellerophoncommand.o source/commands/chimerabellerophoncommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimerabellerophoncommand.h:13, from source/commands/chimerabellerophoncommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimerabellerophoncommand.h:13, from source/commands/chimerabellerophoncommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimerabellerophoncommand.h:13, from source/commands/chimerabellerophoncommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getsharedotucommand.o source/commands/getsharedotucommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getsharedotucommand.h:13, from source/commands/getsharedotucommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getsharedotucommand.h:13, from source/commands/getsharedotucommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getsharedotucommand.h:13, from source/commands/getsharedotucommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/classifyseqscommand.o source/commands/classifyseqscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/countgroupscommand.o source/commands/countgroupscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifyseqscommand.h:14, from source/commands/classifyseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifyseqscommand.h:14, from source/commands/classifyseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifyseqscommand.h:14, from source/commands/classifyseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/countgroupscommand.h:13, from source/commands/countgroupscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/countgroupscommand.h:13, from source/commands/countgroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/countgroupscommand.h:13, from source/commands/countgroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/rarefactcommand.o source/commands/rarefactcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/rarefactcommand.h:12, from source/commands/rarefactcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/rarefactcommand.h:12, from source/commands/rarefactcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/rarefactcommand.h:12, from source/commands/rarefactcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/removeotulabelscommand.o source/commands/removeotulabelscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/screenseqscommand.o source/commands/screenseqscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removeotulabelscommand.h:13, from source/commands/removeotulabelscommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removeotulabelscommand.h:13, from source/commands/removeotulabelscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removeotulabelscommand.h:13, from source/commands/removeotulabelscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/screenseqscommand.h:12, from source/commands/screenseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/screenseqscommand.h:12, from source/commands/screenseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/screenseqscommand.h:12, from source/commands/screenseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/parsimonycommand.o source/commands/parsimonycommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/sracommand.o source/commands/sracommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/parsimonycommand.h:12, from source/commands/parsimonycommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/parsimonycommand.h:12, from source/commands/parsimonycommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/parsimonycommand.h:12, from source/commands/parsimonycommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sracommand.h:12, from source/commands/sracommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sracommand.h:12, from source/commands/sracommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sracommand.h:12, from source/commands/sracommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getdistscommand.o source/commands/getdistscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getdistscommand.h:12, from source/commands/getdistscommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getdistscommand.h:12, from source/commands/getdistscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getdistscommand.h:12, from source/commands/getdistscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/homovacommand.o source/commands/homovacommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/sffmultiplecommand.o source/commands/sffmultiplecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/homovacommand.h:14, from source/commands/homovacommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/homovacommand.h:14, from source/commands/homovacommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/homovacommand.h:14, from source/commands/homovacommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sffmultiplecommand.h:12, from source/commands/sffmultiplecommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sffmultiplecommand.h:12, from source/commands/sffmultiplecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sffmultiplecommand.h:12, from source/commands/sffmultiplecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/splitabundcommand.o source/commands/splitabundcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/splitabundcommand.h:20, from source/commands/splitabundcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/splitabundcommand.h:20, from source/commands/splitabundcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/splitabundcommand.h:20, from source/commands/splitabundcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/primerdesigncommand.o source/commands/primerdesigncommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/primerdesigncommand.h:12, from source/commands/primerdesigncommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/primerdesigncommand.h:12, from source/commands/primerdesigncommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/primerdesigncommand.h:12, from source/commands/primerdesigncommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getrabundcommand.o source/commands/getrabundcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/catchallcommand.o source/commands/catchallcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getrabundcommand.h:14, from source/commands/getrabundcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getrabundcommand.h:14, from source/commands/getrabundcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getrabundcommand.h:14, from source/commands/getrabundcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/catchallcommand.h:13, from source/commands/catchallcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/catchallcommand.h:13, from source/commands/catchallcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/catchallcommand.h:13, from source/commands/catchallcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/commands/catchallcommand.cpp: In member function ‘virtual int CatchAllCommand::execute()’: source/commands/catchallcommand.cpp:332:38: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(catchAllCommand.c_str()); ^ source/commands/catchallcommand.cpp:395:38: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(catchAllCommand.c_str()); ^ source/commands/catchallcommand.cpp:480:36: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(catchAllCommand.c_str()); ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/deconvolutecommand.o source/commands/deconvolutecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/deconvolutecommand.h:12, from source/commands/deconvolutecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/deconvolutecommand.h:12, from source/commands/deconvolutecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/deconvolutecommand.h:12, from source/commands/deconvolutecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/mantelcommand.o source/commands/mantelcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mantelcommand.h:13, from source/commands/mantelcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mantelcommand.h:13, from source/commands/mantelcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mantelcommand.h:13, from source/commands/mantelcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/matrixoutputcommand.o source/commands/matrixoutputcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/matrixoutputcommand.h:12, from source/commands/matrixoutputcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/matrixoutputcommand.h:12, from source/commands/matrixoutputcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/matrixoutputcommand.h:12, from source/commands/matrixoutputcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/mergetaxsummarycommand.o source/commands/mergetaxsummarycommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/makelookupcommand.o source/commands/makelookupcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/mergetaxsummarycommand.h:12, from source/commands/mergetaxsummarycommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/mergetaxsummarycommand.h:12, from source/commands/mergetaxsummarycommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/mergetaxsummarycommand.h:12, from source/commands/mergetaxsummarycommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makelookupcommand.h:12, from source/commands/makelookupcommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makelookupcommand.h:12, from source/commands/makelookupcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makelookupcommand.h:12, from source/commands/makelookupcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getcurrentcommand.o source/commands/getcurrentcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getcurrentcommand.h:13, from source/commands/getcurrentcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getcurrentcommand.h:13, from source/commands/getcurrentcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getcurrentcommand.h:13, from source/commands/getcurrentcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/summarysharedcommand.o source/commands/summarysharedcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getlineagecommand.o source/commands/getlineagecommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/nmdscommand.o source/commands/nmdscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summarysharedcommand.h:13, from source/commands/summarysharedcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summarysharedcommand.h:13, from source/commands/summarysharedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summarysharedcommand.h:13, from source/commands/summarysharedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getlineagecommand.h:13, from source/commands/getlineagecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getlineagecommand.h:13, from source/commands/getlineagecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getlineagecommand.h:13, from source/commands/getlineagecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/chimeravsearchcommand.o source/commands/chimeravsearchcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/nmdscommand.h:13, from source/commands/nmdscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/nmdscommand.h:13, from source/commands/nmdscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/nmdscommand.h:13, from source/commands/nmdscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/chimeravsearchcommand.h:12, from source/commands/chimeravsearchcommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/chimeravsearchcommand.h:12, from source/commands/chimeravsearchcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/chimeravsearchcommand.h:12, from source/commands/chimeravsearchcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/commands/chimeravsearchcommand.cpp: In member function ‘int ChimeraVsearchCommand::driver(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, int&)’: source/commands/chimeravsearchcommand.cpp:1362:38: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(commandString.c_str()); ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getcommandinfocommand.o source/commands/getcommandinfocommand.cpp In file included from /usr/include/string.h:635:0, from /usr/include/boost/range/detail/implementation_help.hpp:18, from /usr/include/boost/range/end.hpp:24, from /usr/include/boost/range/functions.hpp:19, from /usr/include/boost/range/iterator_range_core.hpp:38, from /usr/include/boost/range/iterator_range.hpp:13, from /usr/include/boost/iostreams/traits.hpp:39, from /usr/include/boost/iostreams/pipeline.hpp:18, from /usr/include/boost/iostreams/detail/push.hpp:22, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/chimeravsearchcommand.h:12, from source/commands/chimeravsearchcommand.cpp:9: In function ‘char* strncat(char*, const char*, size_t)’, inlined from ‘int ChimeraVsearchCommand::driver(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, int&)’ at source/commands/chimeravsearchcommand.cpp:1239:64: /usr/include/arm-linux-gnueabihf/bits/string3.h:156:71: warning: call to void* __builtin___memcpy_chk(void*, const void*, unsigned int, unsigned int) will always overflow destination buffer return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); ^ In function ‘char* strncat(char*, const char*, size_t)’, inlined from ‘int ChimeraVsearchCommand::driver(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, int&)’ at source/commands/chimeravsearchcommand.cpp:1247:67: /usr/include/arm-linux-gnueabihf/bits/string3.h:156:71: warning: call to void* __builtin___memcpy_chk(void*, const void*, unsigned int, unsigned int) will always overflow destination buffer return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); ^ In function ‘char* strncat(char*, const char*, size_t)’, inlined from ‘int ChimeraVsearchCommand::driver(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, int&)’ at source/commands/chimeravsearchcommand.cpp:1320:70: /usr/include/arm-linux-gnueabihf/bits/string3.h:156:71: warning: call to void* __builtin___memcpy_chk(void*, const void*, unsigned int, unsigned int) will always overflow destination buffer return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getcommandinfocommand.h:15, from source/commands/getcommandinfocommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getcommandinfocommand.h:15, from source/commands/getcommandinfocommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getcommandinfocommand.h:15, from source/commands/getcommandinfocommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/collectsharedcommand.o source/commands/collectsharedcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/mimarksattributescommand.o source/commands/mimarksattributescommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/collectsharedcommand.h:13, from source/commands/collectsharedcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/collectsharedcommand.h:13, from source/commands/collectsharedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/collectsharedcommand.h:13, from source/commands/collectsharedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mimarksattributescommand.h:12, from source/commands/mimarksattributescommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mimarksattributescommand.h:12, from source/commands/mimarksattributescommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mimarksattributescommand.h:12, from source/commands/mimarksattributescommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getsabundcommand.o source/commands/getsabundcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getsabundcommand.h:14, from source/commands/getsabundcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getsabundcommand.h:14, from source/commands/getsabundcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getsabundcommand.h:14, from source/commands/getsabundcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/lefsecommand.o source/commands/lefsecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/lefsecommand.h:12, from source/commands/lefsecommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/lefsecommand.h:12, from source/commands/lefsecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/lefsecommand.h:12, from source/commands/lefsecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/removeotuscommand.o source/commands/removeotuscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/phylodiversitycommand.o source/commands/phylodiversitycommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removeotuscommand.h:13, from source/commands/removeotuscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removeotuscommand.h:13, from source/commands/removeotuscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removeotuscommand.h:13, from source/commands/removeotuscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/phylodiversitycommand.h:13, from source/commands/phylodiversitycommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/phylodiversitycommand.h:13, from source/commands/phylodiversitycommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/phylodiversitycommand.h:13, from source/commands/phylodiversitycommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/filtersharedcommand.o source/commands/filtersharedcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/pcoacommand.o source/commands/pcoacommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/filtersharedcommand.h:12, from source/commands/filtersharedcommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/filtersharedcommand.h:12, from source/commands/filtersharedcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/filtersharedcommand.h:12, from source/commands/filtersharedcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/pcoacommand.h:13, from source/commands/pcoacommand.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/pcoacommand.h:13, from source/commands/pcoacommand.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/pcoacommand.h:13, from source/commands/pcoacommand.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/filterseqscommand.o source/commands/filterseqscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/mergesfffilecommand.o source/commands/mergesfffilecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/filterseqscommand.h:13, from source/commands/filterseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/filterseqscommand.h:13, from source/commands/filterseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/filterseqscommand.h:13, from source/commands/filterseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mergesfffilecommand.h:12, from source/commands/mergesfffilecommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mergesfffilecommand.h:12, from source/commands/mergesfffilecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mergesfffilecommand.h:12, from source/commands/mergesfffilecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/secondarystructurecommand.o source/commands/secondarystructurecommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/shhhercommand.o source/commands/shhhercommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/secondarystructurecommand.h:13, from source/commands/secondarystructurecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/secondarystructurecommand.h:13, from source/commands/secondarystructurecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/secondarystructurecommand.h:13, from source/commands/secondarystructurecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/shhhercommand.h:13, from source/commands/shhhercommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/shhhercommand.h:13, from source/commands/shhhercommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/shhhercommand.h:13, from source/commands/shhhercommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/pcacommand.o source/commands/pcacommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/metastatscommand.o source/commands/metastatscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/pcacommand.h:13, from source/commands/pcacommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/pcacommand.h:13, from source/commands/pcacommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/pcacommand.h:13, from source/commands/pcacommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/metastatscommand.h:13, from source/commands/metastatscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/metastatscommand.h:13, from source/commands/metastatscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/metastatscommand.h:13, from source/commands/metastatscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/subsamplecommand.o source/commands/subsamplecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/subsamplecommand.h:13, from source/commands/subsamplecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/subsamplecommand.h:13, from source/commands/subsamplecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/subsamplecommand.h:13, from source/commands/subsamplecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/chimeraslayercommand.o source/commands/chimeraslayercommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/chopseqscommand.o source/commands/chopseqscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeraslayercommand.h:13, from source/commands/chimeraslayercommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeraslayercommand.h:13, from source/commands/chimeraslayercommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeraslayercommand.h:13, from source/commands/chimeraslayercommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/chopseqscommand.h:14, from source/commands/chopseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/chopseqscommand.h:14, from source/commands/chopseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/chopseqscommand.h:14, from source/commands/chopseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/makebiomcommand.o source/commands/makebiomcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makebiomcommand.h:13, from source/commands/makebiomcommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makebiomcommand.h:13, from source/commands/makebiomcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makebiomcommand.h:13, from source/commands/makebiomcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/aligncommand.o source/commands/aligncommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/aligncommand.h:12, from source/commands/aligncommand.cpp:17: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/aligncommand.h:12, from source/commands/aligncommand.cpp:17: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/aligncommand.h:12, from source/commands/aligncommand.cpp:17: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/seqerrorcommand.o source/commands/seqerrorcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/seqerrorcommand.h:13, from source/commands/seqerrorcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/seqerrorcommand.h:13, from source/commands/seqerrorcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/seqerrorcommand.h:13, from source/commands/seqerrorcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getlabelcommand.o source/commands/getlabelcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/consensusseqscommand.o source/commands/consensusseqscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/sffinfocommand.o source/commands/sffinfocommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getlabelcommand.h:13, from source/commands/getlabelcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getlabelcommand.h:13, from source/commands/getlabelcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getlabelcommand.h:13, from source/commands/getlabelcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/consensusseqscommand.h:14, from source/commands/consensusseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/consensusseqscommand.h:14, from source/commands/consensusseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/consensusseqscommand.h:14, from source/commands/consensusseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sffinfocommand.h:13, from source/commands/sffinfocommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sffinfocommand.h:13, from source/commands/sffinfocommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sffinfocommand.h:13, from source/commands/sffinfocommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/corraxescommand.o source/commands/corraxescommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/cooccurrencecommand.o source/commands/cooccurrencecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/corraxescommand.h:13, from source/commands/corraxescommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/corraxescommand.h:13, from source/commands/corraxescommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/corraxescommand.h:13, from source/commands/corraxescommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/cooccurrencecommand.h:14, from source/commands/cooccurrencecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/cooccurrencecommand.h:14, from source/commands/cooccurrencecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/cooccurrencecommand.h:14, from source/commands/cooccurrencecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/preclustercommand.o source/commands/preclustercommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/preclustercommand.h:15, from source/commands/preclustercommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/preclustercommand.h:15, from source/commands/preclustercommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/preclustercommand.h:15, from source/commands/preclustercommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/setdircommand.o source/commands/setdircommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setdircommand.h:13, from source/commands/setdircommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setdircommand.h:13, from source/commands/setdircommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setdircommand.h:13, from source/commands/setdircommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/makelefsecommand.o source/commands/makelefsecommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getseqscommand.o source/commands/getseqscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/commands/makelefsecommand.h:12, from source/commands/makelefsecommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/commands/makelefsecommand.h:12, from source/commands/makelefsecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/commands/makelefsecommand.h:12, from source/commands/makelefsecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getseqscommand.h:13, from source/commands/getseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getseqscommand.h:13, from source/commands/getseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getseqscommand.h:13, from source/commands/getseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/setcurrentcommand.o source/commands/setcurrentcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getmetacommunitycommand.o source/commands/getmetacommunitycommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setcurrentcommand.h:14, from source/commands/setcurrentcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setcurrentcommand.h:14, from source/commands/setcurrentcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setcurrentcommand.h:14, from source/commands/setcurrentcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getmetacommunitycommand.h:12, from source/commands/getmetacommunitycommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getmetacommunitycommand.h:12, from source/commands/getmetacommunitycommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getmetacommunitycommand.h:12, from source/commands/getmetacommunitycommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/setseedcommand.o source/commands/setseedcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setseedcommand.h:12, from source/commands/setseedcommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setseedcommand.h:12, from source/commands/setseedcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setseedcommand.h:12, from source/commands/setseedcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/sharedcommand.o source/commands/sharedcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sharedcommand.h:12, from source/commands/sharedcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sharedcommand.h:12, from source/commands/sharedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sharedcommand.h:12, from source/commands/sharedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/makecontigscommand.o source/commands/makecontigscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makecontigscommand.h:12, from source/commands/makecontigscommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makecontigscommand.h:12, from source/commands/makecontigscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makecontigscommand.h:12, from source/commands/makecontigscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/mergefilecommand.o source/commands/mergefilecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/mergefilecommand.h:13, from source/commands/mergefilecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/mergefilecommand.h:13, from source/commands/mergefilecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/mergefilecommand.h:13, from source/commands/mergefilecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/biominfocommand.o source/commands/biominfocommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/biominfocommand.h:12, from source/commands/biominfocommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/biominfocommand.h:12, from source/commands/biominfocommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/biominfocommand.h:12, from source/commands/biominfocommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/classifyrfsharedcommand.o source/commands/classifyrfsharedcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/helpcommand.o source/commands/helpcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifyrfsharedcommand.h:12, from source/commands/classifyrfsharedcommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifyrfsharedcommand.h:12, from source/commands/classifyrfsharedcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifyrfsharedcommand.h:12, from source/commands/classifyrfsharedcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/helpcommand.h:14, from source/commands/helpcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/helpcommand.h:14, from source/commands/helpcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/helpcommand.h:14, from source/commands/helpcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/pcrseqscommand.o source/commands/pcrseqscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/pcrseqscommand.h:13, from source/commands/pcrseqscommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/pcrseqscommand.h:13, from source/commands/pcrseqscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/pcrseqscommand.h:13, from source/commands/pcrseqscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/anosimcommand.o source/commands/anosimcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/chimeraperseuscommand.o source/commands/chimeraperseuscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/anosimcommand.h:14, from source/commands/anosimcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/anosimcommand.h:14, from source/commands/anosimcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/anosimcommand.h:14, from source/commands/anosimcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeraperseuscommand.h:16, from source/commands/chimeraperseuscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeraperseuscommand.h:16, from source/commands/chimeraperseuscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeraperseuscommand.h:16, from source/commands/chimeraperseuscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/deuniquetreecommand.o source/commands/deuniquetreecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/deuniquetreecommand.h:14, from source/commands/deuniquetreecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/deuniquetreecommand.h:14, from source/commands/deuniquetreecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/deuniquetreecommand.h:14, from source/commands/deuniquetreecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/makefastqcommand.o source/commands/makefastqcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makefastqcommand.h:14, from source/commands/makefastqcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makefastqcommand.h:14, from source/commands/makefastqcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makefastqcommand.h:14, from source/commands/makefastqcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/trimflowscommand.o source/commands/trimflowscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/classifyotucommand.o source/commands/classifyotucommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/renamefilecommand.o source/commands/renamefilecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/trimflowscommand.h:13, from source/commands/trimflowscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/trimflowscommand.h:13, from source/commands/trimflowscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/trimflowscommand.h:13, from source/commands/trimflowscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifyotucommand.h:13, from source/commands/classifyotucommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifyotucommand.h:13, from source/commands/classifyotucommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifyotucommand.h:13, from source/commands/classifyotucommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/renamefilecommand.h:12, from source/commands/renamefilecommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/renamefilecommand.h:12, from source/commands/renamefilecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/renamefilecommand.h:12, from source/commands/renamefilecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/chimerapintailcommand.o source/commands/chimerapintailcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/sortseqscommand.o source/commands/sortseqscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimerapintailcommand.h:13, from source/commands/chimerapintailcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimerapintailcommand.h:13, from source/commands/chimerapintailcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimerapintailcommand.h:13, from source/commands/chimerapintailcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/otuassociationcommand.o source/commands/otuassociationcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sortseqscommand.h:15, from source/commands/sortseqscommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sortseqscommand.h:15, from source/commands/sortseqscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sortseqscommand.h:15, from source/commands/sortseqscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/otuassociationcommand.h:14, from source/commands/otuassociationcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/otuassociationcommand.h:14, from source/commands/otuassociationcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/otuassociationcommand.h:14, from source/commands/otuassociationcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/removedistscommand.o source/commands/removedistscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/parsefastaqcommand.o source/commands/parsefastaqcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removedistscommand.h:12, from source/commands/removedistscommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removedistscommand.h:12, from source/commands/removedistscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removedistscommand.h:12, from source/commands/removedistscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/parsefastaqcommand.h:14, from source/commands/parsefastaqcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/parsefastaqcommand.h:14, from source/commands/parsefastaqcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/parsefastaqcommand.h:14, from source/commands/parsefastaqcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/amovacommand.o source/commands/amovacommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/amovacommand.h:13, from source/commands/amovacommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/amovacommand.h:13, from source/commands/amovacommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/amovacommand.h:13, from source/commands/amovacommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/clearcutcommand.o source/commands/clearcutcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/classifysvmsharedcommand.o source/commands/classifysvmsharedcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clearcutcommand.h:13, from source/commands/clearcutcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clearcutcommand.h:13, from source/commands/clearcutcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clearcutcommand.h:13, from source/commands/clearcutcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifysvmsharedcommand.h:14, from source/commands/classifysvmsharedcommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifysvmsharedcommand.h:14, from source/commands/classifysvmsharedcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifysvmsharedcommand.h:14, from source/commands/classifysvmsharedcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/countseqscommand.o source/commands/countseqscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/countseqscommand.h:13, from source/commands/countseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/countseqscommand.h:13, from source/commands/countseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/countseqscommand.h:13, from source/commands/countseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/chimerauchimecommand.o source/commands/chimerauchimecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/chimerauchimecommand.h:14, from source/commands/chimerauchimecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/chimerauchimecommand.h:14, from source/commands/chimerauchimecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/chimerauchimecommand.h:14, from source/commands/chimerauchimecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/commands/chimerauchimecommand.cpp: In member function ‘int ChimeraUchimeCommand::driver(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, int&)’: source/commands/chimerauchimecommand.cpp:1501:32: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(commandString.c_str()); ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/libshuffcommand.o source/commands/libshuffcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/nocommands.o source/commands/nocommands.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getgroupcommand.o source/commands/getgroupcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/libshuffcommand.h:13, from source/commands/libshuffcommand.cpp:16: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/libshuffcommand.h:13, from source/commands/libshuffcommand.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/libshuffcommand.h:13, from source/commands/libshuffcommand.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/nocommands.h:14, from source/commands/nocommands.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/nocommands.h:14, from source/commands/nocommands.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/nocommands.h:14, from source/commands/nocommands.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getgroupcommand.h:13, from source/commands/getgroupcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getgroupcommand.h:13, from source/commands/getgroupcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getgroupcommand.h:13, from source/commands/getgroupcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/string.h:635:0, from /usr/include/boost/range/detail/implementation_help.hpp:18, from /usr/include/boost/range/end.hpp:24, from /usr/include/boost/range/functions.hpp:19, from /usr/include/boost/range/iterator_range_core.hpp:38, from /usr/include/boost/range/iterator_range.hpp:13, from /usr/include/boost/iostreams/traits.hpp:39, from /usr/include/boost/iostreams/pipeline.hpp:18, from /usr/include/boost/iostreams/detail/push.hpp:22, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/chimerauchimecommand.h:14, from source/commands/chimerauchimecommand.cpp:10: In function ‘char* strcpy(char*, const char*)’, inlined from ‘int ChimeraUchimeCommand::driver(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, int&)’ at source/commands/chimerauchimecommand.cpp:1472:28: /usr/include/arm-linux-gnueabihf/bits/string3.h:110:63: warning: call to void* __builtin___memcpy_chk(void*, const void*, unsigned int, unsigned int) will always overflow destination buffer return __builtin___strcpy_chk (__dest, __src, __bos (__dest)); ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/chimeracheckcommand.o source/commands/chimeracheckcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeracheckcommand.h:13, from source/commands/chimeracheckcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeracheckcommand.h:13, from source/commands/chimeracheckcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeracheckcommand.h:13, from source/commands/chimeracheckcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getmimarkspackagecommand.o source/commands/getmimarkspackagecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getmimarkspackagecommand.h:12, from source/commands/getmimarkspackagecommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getmimarkspackagecommand.h:12, from source/commands/getmimarkspackagecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getmimarkspackagecommand.h:12, from source/commands/getmimarkspackagecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/pairwiseseqscommand.o source/commands/pairwiseseqscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/pairwiseseqscommand.h:13, from source/commands/pairwiseseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/pairwiseseqscommand.h:13, from source/commands/pairwiseseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/pairwiseseqscommand.h:13, from source/commands/pairwiseseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/commands/pairwiseseqscommand.cpp: In member function ‘virtual int PairwiseSeqsCommand::execute()’: source/commands/pairwiseseqscommand.cpp:342:46: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(("gzip -v " + outputFile).c_str()); ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/mergegroupscommand.o source/commands/mergegroupscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mergegroupscommand.h:13, from source/commands/mergegroupscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mergegroupscommand.h:13, from source/commands/mergegroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mergegroupscommand.h:13, from source/commands/mergegroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getoturepcommand.o source/commands/getoturepcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/setlogfilecommand.o source/commands/setlogfilecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getoturepcommand.h:14, from source/commands/getoturepcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getoturepcommand.h:14, from source/commands/getoturepcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getoturepcommand.h:14, from source/commands/getoturepcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setlogfilecommand.h:13, from source/commands/setlogfilecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setlogfilecommand.h:13, from source/commands/setlogfilecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setlogfilecommand.h:13, from source/commands/setlogfilecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/sparcccommand.o source/commands/sparcccommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sparcccommand.h:12, from source/commands/sparcccommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sparcccommand.h:12, from source/commands/sparcccommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sparcccommand.h:12, from source/commands/sparcccommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/heatmapcommand.o source/commands/heatmapcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/heatmapcommand.h:14, from source/commands/heatmapcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/heatmapcommand.h:14, from source/commands/heatmapcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/heatmapcommand.h:14, from source/commands/heatmapcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/phylotypecommand.o source/commands/phylotypecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/taxonomyequalizer.h:14, from source/commands/phylotypecommand.h:14, from source/commands/phylotypecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/taxonomyequalizer.h:14, from source/commands/phylotypecommand.h:14, from source/commands/phylotypecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/taxonomyequalizer.h:14, from source/commands/phylotypecommand.h:14, from source/commands/phylotypecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/newcommandtemplate.o source/commands/newcommandtemplate.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/newcommandtemplate.h:25, from source/commands/newcommandtemplate.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/newcommandtemplate.h:25, from source/commands/newcommandtemplate.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/newcommandtemplate.h:25, from source/commands/newcommandtemplate.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/shhhseqscommand.o source/commands/shhhseqscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/summarycommand.o source/commands/summarycommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/shhhseqscommand.h:13, from source/commands/shhhseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/shhhseqscommand.h:13, from source/commands/shhhseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/shhhseqscommand.h:13, from source/commands/shhhseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/reversecommand.o source/commands/reversecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summarycommand.h:12, from source/commands/summarycommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summarycommand.h:12, from source/commands/summarycommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summarycommand.h:12, from source/commands/summarycommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/reversecommand.h:13, from source/commands/reversecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/reversecommand.h:13, from source/commands/reversecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/reversecommand.h:13, from source/commands/reversecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/classifytreecommand.o source/commands/classifytreecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifytreecommand.h:12, from source/commands/classifytreecommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifytreecommand.h:12, from source/commands/classifytreecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifytreecommand.h:12, from source/commands/classifytreecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/collectcommand.o source/commands/collectcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/communitytype/communitytype.o source/communitytype/communitytype.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/collectcommand.h:12, from source/commands/collectcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/collectcommand.h:12, from source/commands/collectcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/collectcommand.h:12, from source/commands/collectcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/communitytype.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/communitytype.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/communitytype.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/communitytype/pam.o source/communitytype/pam.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/communitytype/kmeans.o source/communitytype/kmeans.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/pam.h:12, from source/communitytype/pam.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/pam.h:12, from source/communitytype/pam.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/pam.h:12, from source/communitytype/pam.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/communitytype/qFinderDMM.o source/communitytype/qFinderDMM.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/kmeans.h:12, from source/communitytype/kmeans.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/kmeans.h:12, from source/communitytype/kmeans.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/kmeans.h:12, from source/communitytype/kmeans.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/qFinderDMM.h:12, from source/communitytype/qFinderDMM.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/qFinderDMM.h:12, from source/communitytype/qFinderDMM.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/qFinderDMM.h:12, from source/communitytype/qFinderDMM.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/listvector.o source/datastructures/listvector.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/fastqread.o source/datastructures/fastqread.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/datastructures/listvector.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/datastructures/listvector.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/datastructures/listvector.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/treenode.o source/datastructures/treenode.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fastqread.h:12, from source/datastructures/fastqread.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fastqread.h:12, from source/datastructures/fastqread.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fastqread.h:12, from source/datastructures/fastqread.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treenode.h:13, from source/datastructures/treenode.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treenode.h:13, from source/datastructures/treenode.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treenode.h:13, from source/datastructures/treenode.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/ordervector.o source/datastructures/ordervector.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/qualityscores.o source/datastructures/qualityscores.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/ordervector.hpp:4, from source/datastructures/ordervector.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/ordervector.hpp:4, from source/datastructures/ordervector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/ordervector.hpp:4, from source/datastructures/ordervector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sharedrabundfloatvector.o source/datastructures/sharedrabundfloatvector.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sequence.o source/datastructures/sequence.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/qualityscores.h:16, from source/datastructures/qualityscores.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/qualityscores.h:16, from source/datastructures/qualityscores.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/qualityscores.h:16, from source/datastructures/qualityscores.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/flowdata.o source/datastructures/flowdata.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedrabundfloatvector.h:14, from source/datastructures/sharedrabundfloatvector.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedrabundfloatvector.h:14, from source/datastructures/sharedrabundfloatvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedrabundfloatvector.h:14, from source/datastructures/sharedrabundfloatvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/sequence.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/sequence.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/sequence.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/flowdata.h:13, from source/datastructures/flowdata.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/flowdata.h:13, from source/datastructures/flowdata.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/flowdata.h:13, from source/datastructures/flowdata.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/suffixnodes.o source/datastructures/suffixnodes.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/kmer.o source/datastructures/kmer.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/tree.o source/datastructures/tree.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/suffixnodes.hpp:19, from source/datastructures/suffixnodes.cpp:16: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/suffixnodes.hpp:19, from source/datastructures/suffixnodes.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/suffixnodes.hpp:19, from source/datastructures/suffixnodes.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sharedrabundvector.o source/datastructures/sharedrabundvector.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/kmer.hpp:13, from source/datastructures/kmer.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/kmer.hpp:13, from source/datastructures/kmer.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/kmer.hpp:13, from source/datastructures/kmer.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treenode.h:13, from source/datastructures/tree.h:13, from source/datastructures/tree.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treenode.h:13, from source/datastructures/tree.h:13, from source/datastructures/tree.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treenode.h:13, from source/datastructures/tree.h:13, from source/datastructures/tree.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/oligos.o source/datastructures/oligos.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sparsedistancematrix.o source/datastructures/sparsedistancematrix.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedrabundvector.h:13, from source/datastructures/sharedrabundvector.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedrabundvector.h:13, from source/datastructures/sharedrabundvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedrabundvector.h:13, from source/datastructures/sharedrabundvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/oligos.h:13, from source/datastructures/oligos.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/oligos.h:13, from source/datastructures/oligos.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/oligos.h:13, from source/datastructures/oligos.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sparsedistancematrix.h:12, from source/datastructures/sparsedistancematrix.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sparsedistancematrix.h:12, from source/datastructures/sparsedistancematrix.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sparsedistancematrix.h:12, from source/datastructures/sparsedistancematrix.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sharedordervector.o source/datastructures/sharedordervector.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/fastamap.o source/datastructures/fastamap.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedordervector.h:18, from source/datastructures/sharedordervector.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedordervector.h:18, from source/datastructures/sharedordervector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedordervector.h:18, from source/datastructures/sharedordervector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fastamap.h:13, from source/datastructures/fastamap.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fastamap.h:13, from source/datastructures/fastamap.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fastamap.h:13, from source/datastructures/fastamap.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/alignmentdb.o source/datastructures/alignmentdb.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sparsematrix.o source/datastructures/sparsematrix.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignmentdb.h:13, from source/datastructures/alignmentdb.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignmentdb.h:13, from source/datastructures/alignmentdb.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignmentdb.h:13, from source/datastructures/alignmentdb.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sharedlistvector.o source/datastructures/sharedlistvector.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sequencedb.o source/datastructures/sequencedb.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sparsematrix.hpp:4, from source/datastructures/sparsematrix.cpp:2: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sparsematrix.hpp:4, from source/datastructures/sparsematrix.cpp:2: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sparsematrix.hpp:4, from source/datastructures/sparsematrix.cpp:2: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/datastructures/sharedlistvector.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/datastructures/sharedlistvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/datastructures/sharedlistvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/sequencedb.h:17, from source/datastructures/sequencedb.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/sequencedb.h:17, from source/datastructures/sequencedb.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/sequencedb.h:17, from source/datastructures/sequencedb.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/kmeralign.o source/datastructures/kmeralign.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/blastdb.o source/datastructures/blastdb.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignment.hpp:16, from source/datastructures/kmeralign.h:17, from source/datastructures/kmeralign.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignment.hpp:16, from source/datastructures/kmeralign.h:17, from source/datastructures/kmeralign.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignment.hpp:16, from source/datastructures/kmeralign.h:17, from source/datastructures/kmeralign.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.hpp:16, from source/datastructures/blastdb.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.hpp:16, from source/datastructures/blastdb.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.hpp:16, from source/datastructures/blastdb.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/datastructures/blastdb.cpp: In member function ‘virtual std::vector BlastDB::findClosestSequences(Sequence*, int)’: source/datastructures/blastdb.cpp:230:31: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(blastCommand.c_str()); ^ source/datastructures/blastdb.cpp: In member function ‘virtual std::vector BlastDB::findClosestMegaBlast(Sequence*, int, int)’: source/datastructures/blastdb.cpp:295:31: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(blastCommand.c_str()); ^ source/datastructures/blastdb.cpp: In member function ‘virtual void BlastDB::generateDB()’: source/datastructures/blastdb.cpp:366:34: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(formatdbCommand.c_str()); // to get the right sequence names, i think. -p F ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/distancedb.o source/datastructures/distancedb.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/groupmap.o source/datastructures/groupmap.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.hpp:16, from source/datastructures/distancedb.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.hpp:16, from source/datastructures/distancedb.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.hpp:16, from source/datastructures/distancedb.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/groupmap.h:12, from source/datastructures/groupmap.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/groupmap.h:12, from source/datastructures/groupmap.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/groupmap.h:12, from source/datastructures/groupmap.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sequenceparser.o source/datastructures/sequenceparser.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequenceparser.h:14, from source/datastructures/sequenceparser.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequenceparser.h:14, from source/datastructures/sequenceparser.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequenceparser.h:14, from source/datastructures/sequenceparser.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/reportfile.o source/datastructures/reportfile.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/alignmentcell.o source/datastructures/alignmentcell.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/reportfile.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/reportfile.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/reportfile.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/datastructures/alignmentcell.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/datastructures/alignmentcell.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/datastructures/alignmentcell.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sequencecountparser.o source/datastructures/sequencecountparser.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/fullmatrix.o source/datastructures/fullmatrix.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequencecountparser.h:12, from source/datastructures/sequencecountparser.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequencecountparser.h:12, from source/datastructures/sequencecountparser.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequencecountparser.h:12, from source/datastructures/sequencecountparser.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/blastalign.o source/datastructures/blastalign.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/datastructures/fullmatrix.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/datastructures/fullmatrix.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/datastructures/fullmatrix.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignment.hpp:16, from source/datastructures/blastalign.cpp:15: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignment.hpp:16, from source/datastructures/blastalign.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignment.hpp:16, from source/datastructures/blastalign.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/database.o source/datastructures/database.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/counttable.o source/datastructures/counttable.cpp source/datastructures/blastalign.cpp: In member function ‘virtual void BlastAlignment::align(std::__cxx11::string, std::__cxx11::string)’: source/datastructures/blastalign.cpp:63:30: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(blastCommand.c_str()); // Here we assume that "bl2seq" is in the users path or in the same folder as ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/counttable.h:39, from source/datastructures/counttable.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/counttable.h:39, from source/datastructures/counttable.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/counttable.h:39, from source/datastructures/counttable.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/treemap.o source/datastructures/treemap.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/nameassignment.o source/datastructures/nameassignment.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treemap.h:12, from source/datastructures/treemap.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treemap.h:12, from source/datastructures/treemap.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treemap.h:12, from source/datastructures/treemap.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/nameassignment.hpp:4, from source/datastructures/nameassignment.cpp:3: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/nameassignment.hpp:4, from source/datastructures/nameassignment.cpp:3: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/nameassignment.hpp:4, from source/datastructures/nameassignment.cpp:3: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/kmerdb.o source/datastructures/kmerdb.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/kmerdb.cpp:25: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/kmerdb.cpp:25: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/kmerdb.cpp:25: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/designmap.o source/datastructures/designmap.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sharedsabundvector.o source/datastructures/sharedsabundvector.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/designmap.h:12, from source/datastructures/designmap.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/designmap.h:12, from source/datastructures/designmap.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/designmap.h:12, from source/datastructures/designmap.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/suffixdb.o source/datastructures/suffixdb.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sabundvector.o source/datastructures/sabundvector.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedsabundvector.h:14, from source/datastructures/sharedsabundvector.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedsabundvector.h:14, from source/datastructures/sharedsabundvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedsabundvector.h:14, from source/datastructures/sharedsabundvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.hpp:16, from source/datastructures/suffixdb.cpp:18: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.hpp:16, from source/datastructures/suffixdb.cpp:18: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.hpp:16, from source/datastructures/suffixdb.cpp:18: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/datastructures/sabundvector.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/datastructures/sabundvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/datastructures/sabundvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/rabundvector.o source/datastructures/rabundvector.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/alignment.o source/datastructures/alignment.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/rabundvector.hpp:4, from source/datastructures/rabundvector.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/rabundvector.hpp:4, from source/datastructures/rabundvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/rabundvector.hpp:4, from source/datastructures/rabundvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/suffixtree.o source/datastructures/suffixtree.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/datastructures/alignment.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/datastructures/alignment.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/datastructures/alignment.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/suffixtree.cpp:25: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/suffixtree.cpp:25: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/suffixtree.cpp:25: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/metastats/mothurfisher.o source/metastats/mothurfisher.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/metastats/mothurmetastats.o source/metastats/mothurmetastats.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/randomforest/regularizeddecisiontree.o source/randomforest/regularizeddecisiontree.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/randomforest/rftreenode.o source/randomforest/rftreenode.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/metastats/mothurfisher.h:14, from source/metastats/mothurfisher.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/metastats/mothurfisher.h:14, from source/metastats/mothurfisher.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/metastats/mothurfisher.h:14, from source/metastats/mothurfisher.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/metastats/mothurmetastats.h:14, from source/metastats/mothurmetastats.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/metastats/mothurmetastats.h:14, from source/metastats/mothurmetastats.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/metastats/mothurmetastats.h:14, from source/metastats/mothurmetastats.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/rftreenode.hpp:12, from source/randomforest/regularizeddecisiontree.h:13, from source/randomforest/regularizeddecisiontree.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/rftreenode.hpp:12, from source/randomforest/regularizeddecisiontree.h:13, from source/randomforest/regularizeddecisiontree.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/rftreenode.hpp:12, from source/randomforest/regularizeddecisiontree.h:13, from source/randomforest/regularizeddecisiontree.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/rftreenode.hpp:12, from source/randomforest/rftreenode.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/rftreenode.hpp:12, from source/randomforest/rftreenode.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/rftreenode.hpp:12, from source/randomforest/rftreenode.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/randomforest/abstractdecisiontree.o source/randomforest/abstractdecisiontree.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/randomforest/decisiontree.o source/randomforest/decisiontree.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/randomforest/randomforest.o source/randomforest/randomforest.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/abstractdecisiontree.hpp:12, from source/randomforest/abstractdecisiontree.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/abstractdecisiontree.hpp:12, from source/randomforest/abstractdecisiontree.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/abstractdecisiontree.hpp:12, from source/randomforest/abstractdecisiontree.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/macros.h:12, from source/randomforest/decisiontree.hpp:12, from source/randomforest/decisiontree.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/macros.h:12, from source/randomforest/decisiontree.hpp:12, from source/randomforest/decisiontree.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/macros.h:12, from source/randomforest/decisiontree.hpp:12, from source/randomforest/decisiontree.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/macros.h:12, from source/randomforest/randomforest.hpp:12, from source/randomforest/randomforest.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/macros.h:12, from source/randomforest/randomforest.hpp:12, from source/randomforest/randomforest.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/macros.h:12, from source/randomforest/randomforest.hpp:12, from source/randomforest/randomforest.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/randomforest/forest.o source/randomforest/forest.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/read/formatcolumn.o source/read/formatcolumn.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/forest.h:12, from source/randomforest/forest.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/forest.h:12, from source/randomforest/forest.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/forest.h:12, from source/randomforest/forest.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/formatmatrix.h:13, from source/read/formatcolumn.h:12, from source/read/formatcolumn.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/formatmatrix.h:13, from source/read/formatcolumn.h:12, from source/read/formatcolumn.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/formatmatrix.h:13, from source/read/formatcolumn.h:12, from source/read/formatcolumn.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/read/splitmatrix.o source/read/splitmatrix.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/read/readphylipvector.o source/read/readphylipvector.cpp source/read/formatcolumn.cpp: In member function ‘virtual int FormatColumnMatrix::read(NameAssignment*)’: source/read/formatcolumn.cpp:87:27: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ^ source/read/formatcolumn.cpp: In member function ‘virtual int FormatColumnMatrix::read(CountTable*)’: source/read/formatcolumn.cpp:250:32: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/read/readblast.o source/read/readblast.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/splitmatrix.h:13, from source/read/splitmatrix.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/splitmatrix.h:13, from source/read/splitmatrix.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/splitmatrix.h:13, from source/read/splitmatrix.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readphylipvector.h:14, from source/read/readphylipvector.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readphylipvector.h:14, from source/read/readphylipvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readphylipvector.h:14, from source/read/readphylipvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readblast.h:12, from source/read/readblast.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readblast.h:12, from source/read/readblast.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readblast.h:12, from source/read/readblast.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/read/readcluster.o source/read/readcluster.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/read/readtree.o source/read/readtree.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/read/formatphylip.o source/read/formatphylip.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readcluster.h:13, from source/read/readcluster.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readcluster.h:13, from source/read/readcluster.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readcluster.h:13, from source/read/readcluster.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readtree.h:12, from source/read/readtree.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readtree.h:12, from source/read/readtree.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readtree.h:12, from source/read/readtree.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/formatmatrix.h:13, from source/read/formatphylip.h:13, from source/read/formatphylip.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/formatmatrix.h:13, from source/read/formatphylip.h:13, from source/read/formatphylip.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/formatmatrix.h:13, from source/read/formatphylip.h:13, from source/read/formatphylip.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/read/formatphylip.cpp: In member function ‘virtual int FormatPhylipMatrix::read(NameAssignment*)’: source/read/formatphylip.cpp:108:29: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ^ source/read/formatphylip.cpp: In member function ‘virtual int FormatPhylipMatrix::read(CountTable*)’: source/read/formatphylip.cpp:338:36: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/read/readcolumn.o source/read/readcolumn.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/read/treereader.o source/read/treereader.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readmatrix.hpp:13, from source/read/readcolumn.h:12, from source/read/readcolumn.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readmatrix.hpp:13, from source/read/readcolumn.h:12, from source/read/readcolumn.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readmatrix.hpp:13, from source/read/readcolumn.h:12, from source/read/readcolumn.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/read/readphylip.o source/read/readphylip.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/read/treereader.h:12, from source/read/treereader.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/read/treereader.h:12, from source/read/treereader.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/read/treereader.h:12, from source/read/treereader.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/svm/svm.o source/svm/svm.cpp cd source/uchime_src && ./mk && mv uchime ../../ && cd .. + CPPNames='addtargets2 alignchime alignchimel alnparams alpha alpha2 fractid getparents globalalign2 make3way mx myutils path searchchime seqdb setnucmx sfasta tracebackbit uchime_main usort viterbifast writechhit' + ObjNames='addtargets2.o alignchime.o alignchimel.o alnparams.o alpha.o alpha2.o fractid.o getparents.o globalalign2.o make3way.o mx.o myutils.o path.o searchchime.o seqdb.o setnucmx.o sfasta.o tracebackbit.o uchime_main.o usort.o viterbifast.o writechhit.o' + rm -f '*.o' mk.stdout mk.stderr tmp.stderr + for CPPName in '$CPPNames' + echo addtargets2 addtargets2 + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 addtargets2.cpp -o addtargets2.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo alignchime alignchime + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 alignchime.cpp -o alignchime.o In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readmatrix.hpp:13, from source/read/readphylip.h:12, from source/read/readphylip.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readmatrix.hpp:13, from source/read/readphylip.h:12, from source/read/readphylip.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readmatrix.hpp:13, from source/read/readphylip.h:12, from source/read/readphylip.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/svm/svm.hpp:23, from source/svm/svm.cpp:17: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/svm/svm.hpp:23, from source/svm/svm.cpp:17: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/svm/svm.hpp:23, from source/svm/svm.cpp:17: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo alignchimel alignchimel + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 alignchimel.cpp -o alignchimel.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo alnparams alnparams + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 alnparams.cpp -o alnparams.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo alpha alpha + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 alpha.cpp -o alpha.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo alpha2 alpha2 + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 alpha2.cpp -o alpha2.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo fractid fractid + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 fractid.cpp -o fractid.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo getparents getparents + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 getparents.cpp -o getparents.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo globalalign2 globalalign2 + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 globalalign2.cpp -o globalalign2.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo make3way make3way + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 make3way.cpp -o make3way.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo mx mx + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 mx.cpp -o mx.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo myutils myutils + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 myutils.cpp -o myutils.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo path path + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 path.cpp -o path.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo searchchime searchchime + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 searchchime.cpp -o searchchime.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo seqdb seqdb + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 seqdb.cpp -o seqdb.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo setnucmx setnucmx + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 setnucmx.cpp -o setnucmx.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo sfasta sfasta + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 sfasta.cpp -o sfasta.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo tracebackbit tracebackbit + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 tracebackbit.cpp -o tracebackbit.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo uchime_main uchime_main + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 uchime_main.cpp -o uchime_main.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo usort usort + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 usort.cpp -o usort.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo viterbifast viterbifast + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 viterbifast.cpp -o viterbifast.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo writechhit writechhit + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 writechhit.cpp -o writechhit.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + LINK_OPTS= + g++ -g -o uchime addtargets2.o alignchime.o alignchimel.o alnparams.o alpha.o alpha2.o fractid.o getparents.o globalalign2.o make3way.o mx.o myutils.o path.o searchchime.o seqdb.o setnucmx.o sfasta.o tracebackbit.o uchime_main.o usort.o viterbifast.o writechhit.o -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L '"\"Enter_your_boost_library_path_here\""' -Lsource/ -Lsource/calculators/ -Lsource/chimera/ -Lsource/classifier/ -Lsource/clearcut/ -Lsource/commands/ -Lsource/communitytype/ -Lsource/datastructures/ -Lsource/metastats/ -Lsource/randomforest/ -Lsource/read/ -Lsource/svm/ + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + ls -lh uchime -rwxrwxr-x 1 buildd buildd 2.3M Sep 17 18:31 uchime + sum uchime 33929 2351 g++ -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L "\"Enter_your_boost_library_path_here\"" -Lsource/ -Lsource/calculators/ -Lsource/chimera/ -Lsource/classifier/ -Lsource/clearcut/ -Lsource/commands/ -Lsource/communitytype/ -Lsource/datastructures/ -Lsource/metastats/ -Lsource/randomforest/ -Lsource/read/ -Lsource/svm/ -o mothur source/randomnumber.o source/consensus.o source/gotohoverlap.o source/sharedutilities.o source/validparameter.o source/rarefact.o source/heatmap.o source/nast.o source/averagelinkage.o source/mothurout.o source/completelinkage.o source/seqnoise.o source/venn.o source/inputdata.o source/calcsparcc.o source/clusterclassic.o source/vsearchfileparser.o source/slibshuff.o source/collect.o source/trialSwap2.o source/fileoutput.o source/cluster.o source/nastreport.o source/wilcox.o source/needlemanoverlap.o source/myseqdist.o source/refchimeratest.o source/subsample.o source/commandfactory.o source/rarecalc.o source/weightedlinkage.o source/progress.o source/linearalgebra.o source/singlelinkage.o source/trimoligos.o source/validcalculator.o source/optionparser.o source/engine.o source/mothur.o source/dlibshuff.o source/heatmapsim.o source/raredisplay.o source/commandoptionparser.o source/libshuff.o source/noalign.o source/overlap.o source/calculators/sharedthetayc.o source/calculators/sharedmorisitahorn.o source/calculators/sharedkulczynski.o source/calculators/qstat.o source/calculators/bergerparker.o source/calculators/sharedanderbergs.o source/calculators/smithwilson.o source/calculators/hamming.o source/calculators/sharedjabund.o source/calculators/shen.o source/calculators/sharedjclass.o source/calculators/canberra.o source/calculators/parsimony.o source/calculators/coverage.o source/calculators/simpson.o source/calculators/mempearson.o source/calculators/logsd.o source/calculators/goodscoverage.o source/calculators/memchord.o source/calculators/manhattan.o source/calculators/geom.o source/calculators/jackknife.o source/calculators/whittaker.o source/calculators/efron.o source/calculators/bootstrap.o source/calculators/sharedsobs.o source/calculators/sharedkstest.o source/calculators/memeuclidean.o source/calculators/invsimpson.o source/calculators/sharedsorclass.o source/calculators/ace.o source/calculators/prng.o source/calculators/shannonrange.o source/calculators/npshannon.o source/calculators/structeuclidean.o source/calculators/sharedchao1.o source/calculators/sharedjest.o source/calculators/chao1.o source/calculators/simpsoneven.o source/calculators/sharedsorabund.o source/calculators/shannon.o source/calculators/spearman.o source/calculators/structchord.o source/calculators/shannoneven.o source/calculators/sharedace.o source/calculators/bstick.o source/calculators/sharedjackknife.o source/calculators/solow.o source/calculators/sharedjsd.o source/calculators/sharedsobscollectsummary.o source/calculators/hellinger.o source/calculators/odum.o source/calculators/structpearson.o source/calculators/heip.o source/calculators/structchi2.o source/calculators/sharedlennon.o source/calculators/uvest.o source/calculators/memchi2.o source/calculators/sharedthetan.o source/calculators/unweighted.o source/calculators/boneh.o source/calculators/sharedsorest.o source/calculators/speciesprofile.o source/calculators/soergel.o source/calculators/sharedkulczynskicody.o source/calculators/sharedmarczewski.o source/calculators/structkulczynski.o source/calculators/sharedrjsd.o source/calculators/weighted.o source/calculators/sharedbraycurtis.o source/calculators/gower.o source/calculators/sharedochiai.o source/calculators/calculator.o source/chimera/pintail.o source/chimera/myPerseus.o source/chimera/bellerophon.o source/chimera/maligner.o source/chimera/chimeraslayer.o source/chimera/chimerarealigner.o source/chimera/slayer.o source/chimera/ccode.o source/chimera/chimeracheckrdp.o source/chimera/mothurchimera.o source/chimera/decalc.o source/classifier/classify.o source/classifier/phylosummary.o source/classifier/taxonomyequalizer.o source/classifier/kmernode.o source/classifier/phylotree.o source/classifier/aligntree.o source/classifier/kmertree.o source/classifier/knn.o source/classifier/alignnode.o source/classifier/bayesian.o source/classifier/taxonomynode.o source/clearcut/distclearcut.o source/clearcut/clearcut.o source/clearcut/fasta.o source/clearcut/dmat.o source/clearcut/getopt_long.o source/clearcut/cmdargs.o source/commands/getotuscommand.o source/commands/listseqscommand.o source/commands/clusterdoturcommand.o source/commands/getlistcountcommand.o source/commands/distancecommand.o source/commands/binsequencecommand.o source/commands/quitcommand.o source/commands/removegroupscommand.o source/commands/indicatorcommand.o source/commands/mgclustercommand.o source/commands/seqsummarycommand.o source/commands/clusterfragmentscommand.o source/commands/treegroupscommand.o source/commands/kruskalwalliscommand.o source/commands/getotulabelscommand.o source/commands/removeseqscommand.o source/commands/venncommand.o source/commands/renameseqscommand.o source/commands/makegroupcommand.o source/commands/deuniqueseqscommand.o source/commands/unifracunweightedcommand.o source/commands/makefilecommand.o source/commands/getgroupscommand.o source/commands/listotulabelscommand.o source/commands/sensspeccommand.o source/commands/summaryqualcommand.o source/commands/removerarecommand.o source/commands/unifracweightedcommand.o source/commands/getcoremicrobiomecommand.o source/commands/createdatabasecommand.o source/commands/splitgroupscommand.o source/commands/parselistscommand.o source/commands/normalizesharedcommand.o source/commands/heatmapsimcommand.o source/commands/clustercommand.o source/commands/degapseqscommand.o source/commands/summarytaxcommand.o source/commands/clustersplitcommand.o source/commands/systemcommand.o source/commands/rarefactsharedcommand.o source/commands/trimseqscommand.o source/commands/otuhierarchycommand.o source/commands/getrelabundcommand.o source/commands/removelineagecommand.o source/commands/chimeraccodecommand.o source/commands/chimerabellerophoncommand.o source/commands/getsharedotucommand.o source/commands/classifyseqscommand.o source/commands/countgroupscommand.o source/commands/rarefactcommand.o source/commands/removeotulabelscommand.o source/commands/screenseqscommand.o source/commands/parsimonycommand.o source/commands/sracommand.o source/commands/getdistscommand.o source/commands/homovacommand.o source/commands/sffmultiplecommand.o source/commands/splitabundcommand.o source/commands/primerdesigncommand.o source/commands/getrabundcommand.o source/commands/catchallcommand.o source/commands/deconvolutecommand.o source/commands/mantelcommand.o source/commands/matrixoutputcommand.o source/commands/mergetaxsummarycommand.o source/commands/makelookupcommand.o source/commands/getcurrentcommand.o source/commands/summarysharedcommand.o source/commands/getlineagecommand.o source/commands/nmdscommand.o source/commands/chimeravsearchcommand.o source/commands/getcommandinfocommand.o source/commands/collectsharedcommand.o source/commands/mimarksattributescommand.o source/commands/getsabundcommand.o source/commands/lefsecommand.o source/commands/removeotuscommand.o source/commands/phylodiversitycommand.o source/commands/filtersharedcommand.o source/commands/pcoacommand.o source/commands/filterseqscommand.o source/commands/mergesfffilecommand.o source/commands/secondarystructurecommand.o source/commands/shhhercommand.o source/commands/pcacommand.o source/commands/metastatscommand.o source/commands/subsamplecommand.o source/commands/chimeraslayercommand.o source/commands/chopseqscommand.o source/commands/makebiomcommand.o source/commands/aligncommand.o source/commands/seqerrorcommand.o source/commands/getlabelcommand.o source/commands/consensusseqscommand.o source/commands/sffinfocommand.o source/commands/corraxescommand.o source/commands/cooccurrencecommand.o source/commands/preclustercommand.o source/commands/setdircommand.o source/commands/makelefsecommand.o source/commands/getseqscommand.o source/commands/setcurrentcommand.o source/commands/getmetacommunitycommand.o source/commands/setseedcommand.o source/commands/sharedcommand.o source/commands/makecontigscommand.o source/commands/mergefilecommand.o source/commands/biominfocommand.o source/commands/classifyrfsharedcommand.o source/commands/helpcommand.o source/commands/pcrseqscommand.o source/commands/anosimcommand.o source/commands/chimeraperseuscommand.o source/commands/deuniquetreecommand.o source/commands/makefastqcommand.o source/commands/trimflowscommand.o source/commands/classifyotucommand.o source/commands/renamefilecommand.o source/commands/chimerapintailcommand.o source/commands/sortseqscommand.o source/commands/otuassociationcommand.o source/commands/removedistscommand.o source/commands/parsefastaqcommand.o source/commands/amovacommand.o source/commands/clearcutcommand.o source/commands/classifysvmsharedcommand.o source/commands/countseqscommand.o source/commands/chimerauchimecommand.o source/commands/libshuffcommand.o source/commands/nocommands.o source/commands/getgroupcommand.o source/commands/chimeracheckcommand.o source/commands/getmimarkspackagecommand.o source/commands/pairwiseseqscommand.o source/commands/mergegroupscommand.o source/commands/getoturepcommand.o source/commands/setlogfilecommand.o source/commands/sparcccommand.o source/commands/heatmapcommand.o source/commands/phylotypecommand.o source/commands/newcommandtemplate.o source/commands/shhhseqscommand.o source/commands/summarycommand.o source/commands/reversecommand.o source/commands/classifytreecommand.o source/commands/collectcommand.o source/communitytype/communitytype.o source/communitytype/pam.o source/communitytype/kmeans.o source/communitytype/qFinderDMM.o source/datastructures/kmer.o source/datastructures/sharedlistvector.o source/datastructures/sharedordervector.o source/datastructures/fastamap.o source/datastructures/distancedb.o source/datastructures/alignmentcell.o source/datastructures/nameassignment.o source/datastructures/fastqread.o source/datastructures/alignment.o source/datastructures/flowdata.o source/datastructures/tree.o source/datastructures/listvector.o source/datastructures/kmeralign.o source/datastructures/sequenceparser.o source/datastructures/sparsematrix.o source/datastructures/alignmentdb.o source/datastructures/fullmatrix.o source/datastructures/blastalign.o source/datastructures/treenode.o source/datastructures/suffixdb.o source/datastructures/sabundvector.o source/datastructures/rabundvector.o source/datastructures/suffixtree.o source/datastructures/blastdb.o source/datastructures/qualityscores.o source/datastructures/suffixnodes.o source/datastructures/groupmap.o source/datastructures/sparsedistancematrix.o source/datastructures/sequencecountparser.o source/datastructures/oligos.o source/datastructures/counttable.o source/datastructures/treemap.o source/datastructures/kmerdb.o source/datastructures/sharedrabundvector.o source/datastructures/sharedrabundfloatvector.o source/datastructures/ordervector.o source/datastructures/sequence.o source/datastructures/sequencedb.o source/datastructures/database.o source/datastructures/designmap.o source/datastructures/sharedsabundvector.o source/datastructures/reportfile.o source/metastats/mothurfisher.o source/metastats/mothurmetastats.o source/randomforest/regularizeddecisiontree.o source/randomforest/rftreenode.o source/randomforest/abstractdecisiontree.o source/randomforest/decisiontree.o source/randomforest/randomforest.o source/randomforest/forest.o source/read/formatcolumn.o source/read/splitmatrix.o source/read/readphylipvector.o source/read/readblast.o source/read/readcluster.o source/read/readtree.o source/read/formatphylip.o source/read/readcolumn.o source/read/treereader.o source/read/readphylip.o source/svm/svm.o -lreadline -lboost_iostreams -lz make[2]: Leaving directory '/«PKGBUILDDIR»' mv mothur mothur-mpi make clean make[2]: Entering directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' dh_auto_build -- 64BIT_VERSION=no USEMPI=no make -j4 64BIT_VERSION=no USEMPI=no make[2]: Entering directory '/«PKGBUILDDIR»' g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/progress.o source/progress.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/consensus.o source/consensus.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/optionparser.o source/optionparser.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/mothur.o source/mothur.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treenode.h:13, from source/datastructures/tree.h:13, from source/consensus.h:13, from source/consensus.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treenode.h:13, from source/datastructures/tree.h:13, from source/consensus.h:13, from source/consensus.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treenode.h:13, from source/datastructures/tree.h:13, from source/consensus.h:13, from source/consensus.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/optionparser.h:15, from source/optionparser.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/optionparser.h:15, from source/optionparser.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/optionparser.h:15, from source/optionparser.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/progress.hpp:4, from source/progress.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/progress.hpp:4, from source/progress.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/progress.hpp:4, from source/progress.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothur.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothur.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothur.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/mothur.cpp: In function ‘int main(int, char**)’: source/mothur.cpp:46:19: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system("clear"); ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/engine.o source/engine.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/venn.o source/venn.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/linearalgebra.o source/linearalgebra.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/engine.hpp:15, from source/engine.cpp:15: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/engine.hpp:15, from source/engine.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/engine.hpp:15, from source/engine.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/venn.h:12, from source/venn.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/venn.h:12, from source/venn.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/venn.h:12, from source/venn.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/linearalgebra.h:13, from source/linearalgebra.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/linearalgebra.h:13, from source/linearalgebra.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/linearalgebra.h:13, from source/linearalgebra.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/inputdata.o source/inputdata.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/gotohoverlap.o source/gotohoverlap.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/inputdata.h:4, from source/inputdata.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/inputdata.h:4, from source/inputdata.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/inputdata.h:4, from source/inputdata.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/gotohoverlap.cpp:21: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/gotohoverlap.cpp:21: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/gotohoverlap.cpp:21: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/clusterclassic.o source/clusterclassic.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/clusterclassic.h:5, from source/clusterclassic.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/clusterclassic.h:5, from source/clusterclassic.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/clusterclassic.h:5, from source/clusterclassic.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/vsearchfileparser.o source/vsearchfileparser.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/slibshuff.o source/slibshuff.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/vsearchfileparser.h:12, from source/vsearchfileparser.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/vsearchfileparser.h:12, from source/vsearchfileparser.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/vsearchfileparser.h:12, from source/vsearchfileparser.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/sharedutilities.o source/sharedutilities.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/slibshuff.h:13, from source/slibshuff.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/slibshuff.h:13, from source/slibshuff.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/slibshuff.h:13, from source/slibshuff.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/sharedutilities.h:12, from source/sharedutilities.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/sharedutilities.h:12, from source/sharedutilities.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/sharedutilities.h:12, from source/sharedutilities.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/singlelinkage.o source/singlelinkage.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/seqnoise.o source/seqnoise.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/singlelinkage.cpp:2: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/singlelinkage.cpp:2: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/singlelinkage.cpp:2: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/refchimeratest.o source/refchimeratest.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/validparameter.o source/validparameter.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/seqnoise.h:22, from source/seqnoise.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/seqnoise.h:22, from source/seqnoise.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/seqnoise.h:22, from source/seqnoise.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/refchimeratest.h:13, from source/refchimeratest.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/refchimeratest.h:13, from source/refchimeratest.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/refchimeratest.h:13, from source/refchimeratest.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/validparameter.h:13, from source/validparameter.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/validparameter.h:13, from source/validparameter.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/validparameter.h:13, from source/validparameter.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/rarefact.o source/rarefact.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/heatmap.o source/heatmap.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/heatmapsim.o source/heatmapsim.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/rarefactioncurvedata.h:4, from source/rarefact.h:4, from source/rarefact.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/rarefactioncurvedata.h:4, from source/rarefact.h:4, from source/rarefact.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/rarefactioncurvedata.h:4, from source/rarefact.h:4, from source/rarefact.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/rabundvector.hpp:4, from source/heatmap.h:12, from source/heatmap.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/rabundvector.hpp:4, from source/heatmap.h:12, from source/heatmap.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/rabundvector.hpp:4, from source/heatmap.h:12, from source/heatmap.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedrabundvector.h:13, from source/heatmapsim.h:13, from source/heatmapsim.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedrabundvector.h:13, from source/heatmapsim.h:13, from source/heatmapsim.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedrabundvector.h:13, from source/heatmapsim.h:13, from source/heatmapsim.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/subsample.o source/subsample.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/subsample.h:12, from source/subsample.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/subsample.h:12, from source/subsample.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/subsample.h:12, from source/subsample.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/nast.o source/nast.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/completelinkage.o source/completelinkage.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/nast.cpp:18: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/nast.cpp:18: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/nast.cpp:18: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/completelinkage.cpp:2: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/completelinkage.cpp:2: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/completelinkage.cpp:2: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/trialSwap2.o source/trialSwap2.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/mothurout.o source/mothurout.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/averagelinkage.o source/averagelinkage.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/trialswap2.h:13, from source/trialSwap2.cpp:1: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/trialswap2.h:13, from source/trialSwap2.cpp:1: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/trialswap2.h:13, from source/trialSwap2.cpp:1: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/mothurout.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/mothurout.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/mothurout.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/averagelinkage.cpp:5: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/averagelinkage.cpp:5: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/averagelinkage.cpp:5: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/randomnumber.o source/randomnumber.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/raredisplay.o source/raredisplay.cpp source/mothurout.cpp: In member function ‘bool MothurOut::mkDir(std::__cxx11::string&)’: source/mothurout.cpp:904:45: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(makeDirectoryCommand.c_str()); ^ source/mothurout.cpp: In member function ‘int MothurOut::renameFile(std::__cxx11::string, std::__cxx11::string)’: source/mothurout.cpp:1400:27: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ^ source/mothurout.cpp:1404:26: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ^ source/mothurout.cpp: In member function ‘std::__cxx11::string MothurOut::sortFile(std::__cxx11::string, std::__cxx11::string)’: source/mothurout.cpp:1611:27: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/randomnumber.h:16, from source/randomnumber.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/randomnumber.h:16, from source/randomnumber.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/randomnumber.h:16, from source/randomnumber.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/validcalculator.o source/validcalculator.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/raredisplay.h:4, from source/raredisplay.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/raredisplay.h:4, from source/raredisplay.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/raredisplay.h:4, from source/raredisplay.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/validcalculator.h:13, from source/validcalculator.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/validcalculator.h:13, from source/validcalculator.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/validcalculator.h:13, from source/validcalculator.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commandoptionparser.o source/commandoptionparser.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commandoptionparser.hpp:4, from source/commandoptionparser.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commandoptionparser.hpp:4, from source/commandoptionparser.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commandoptionparser.hpp:4, from source/commandoptionparser.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calcsparcc.o source/calcsparcc.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/randomnumber.h:16, from source/calcsparcc.h:16, from source/calcsparcc.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/randomnumber.h:16, from source/calcsparcc.h:16, from source/calcsparcc.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/randomnumber.h:16, from source/calcsparcc.h:16, from source/calcsparcc.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/myseqdist.o source/myseqdist.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/fileoutput.o source/fileoutput.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/myseqdist.h:14, from source/myseqdist.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/myseqdist.h:14, from source/myseqdist.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/myseqdist.h:14, from source/myseqdist.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/fileoutput.h:4, from source/fileoutput.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/fileoutput.h:4, from source/fileoutput.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/fileoutput.h:4, from source/fileoutput.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/rarecalc.o source/rarecalc.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/dlibshuff.o source/dlibshuff.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/rarecalc.h:14, from source/rarecalc.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/rarecalc.h:14, from source/rarecalc.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/rarecalc.h:14, from source/rarecalc.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/dlibshuff.h:13, from source/dlibshuff.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/dlibshuff.h:13, from source/dlibshuff.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/dlibshuff.h:13, from source/dlibshuff.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/overlap.o source/overlap.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/cluster.o source/cluster.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/overlap.cpp:16: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/overlap.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/overlap.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/libshuff.o source/libshuff.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/weightedlinkage.o source/weightedlinkage.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/cluster.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/cluster.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/cluster.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/libshuff.h:13, from source/libshuff.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/libshuff.h:13, from source/libshuff.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/libshuff.h:13, from source/libshuff.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/weightedlinkage.cpp:4: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/weightedlinkage.cpp:4: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/cluster.hpp:6, from source/weightedlinkage.cpp:4: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/wilcox.o source/wilcox.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/nastreport.o source/nastreport.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/noalign.o source/noalign.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/wilcox.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/wilcox.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/wilcox.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/nastreport.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/nastreport.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/nastreport.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/collect.o source/collect.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignment.hpp:16, from source/noalign.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignment.hpp:16, from source/noalign.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignment.hpp:16, from source/noalign.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/needlemanoverlap.o source/needlemanoverlap.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/collectorscurvedata.h:4, from source/collect.h:4, from source/collect.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/collectorscurvedata.h:4, from source/collect.h:4, from source/collect.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/collectorscurvedata.h:4, from source/collect.h:4, from source/collect.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/trimoligos.o source/trimoligos.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/needlemanoverlap.cpp:20: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/needlemanoverlap.cpp:20: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/needlemanoverlap.cpp:20: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commandfactory.o source/commandfactory.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/trimoligos.h:13, from source/trimoligos.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/trimoligos.h:13, from source/trimoligos.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/trimoligos.h:13, from source/trimoligos.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commandfactory.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commandfactory.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commandfactory.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedthetayc.o source/calculators/sharedthetayc.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedthetayc.h:16, from source/calculators/sharedthetayc.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedthetayc.h:16, from source/calculators/sharedthetayc.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedthetayc.h:16, from source/calculators/sharedthetayc.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedmorisitahorn.o source/calculators/sharedmorisitahorn.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedmorisitahorn.h:13, from source/calculators/sharedmorisitahorn.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedmorisitahorn.h:13, from source/calculators/sharedmorisitahorn.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedmorisitahorn.h:13, from source/calculators/sharedmorisitahorn.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedkulczynski.o source/calculators/sharedkulczynski.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedkulczynski.h:13, from source/calculators/sharedkulczynski.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedkulczynski.h:13, from source/calculators/sharedkulczynski.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedkulczynski.h:13, from source/calculators/sharedkulczynski.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/qstat.o source/calculators/qstat.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/qstat.h:11, from source/calculators/qstat.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/qstat.h:11, from source/calculators/qstat.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/qstat.h:11, from source/calculators/qstat.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/bergerparker.o source/calculators/bergerparker.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedanderbergs.o source/calculators/sharedanderbergs.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/bergerparker.h:12, from source/calculators/bergerparker.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/bergerparker.h:12, from source/calculators/bergerparker.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/bergerparker.h:12, from source/calculators/bergerparker.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedanderbergs.h:12, from source/calculators/sharedanderbergs.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedanderbergs.h:12, from source/calculators/sharedanderbergs.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedanderbergs.h:12, from source/calculators/sharedanderbergs.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/smithwilson.o source/calculators/smithwilson.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/hamming.o source/calculators/hamming.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedjabund.o source/calculators/sharedjabund.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/smithwilson.h:13, from source/calculators/smithwilson.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/smithwilson.h:13, from source/calculators/smithwilson.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/smithwilson.h:13, from source/calculators/smithwilson.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/hamming.h:15, from source/calculators/hamming.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/hamming.h:15, from source/calculators/hamming.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/hamming.h:15, from source/calculators/hamming.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjabund.h:16, from source/calculators/sharedjabund.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjabund.h:16, from source/calculators/sharedjabund.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjabund.h:16, from source/calculators/sharedjabund.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/shen.o source/calculators/shen.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedjclass.o source/calculators/sharedjclass.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/canberra.o source/calculators/canberra.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shen.h:13, from source/calculators/shen.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shen.h:13, from source/calculators/shen.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shen.h:13, from source/calculators/shen.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjclass.h:15, from source/calculators/sharedjclass.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjclass.h:15, from source/calculators/sharedjclass.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjclass.h:15, from source/calculators/sharedjclass.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/canberra.h:15, from source/calculators/canberra.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/canberra.h:15, from source/calculators/canberra.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/canberra.h:15, from source/calculators/canberra.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/parsimony.o source/calculators/parsimony.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/coverage.o source/calculators/coverage.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/simpson.o source/calculators/simpson.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/treecalculator.h:13, from source/calculators/parsimony.h:14, from source/calculators/parsimony.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/treecalculator.h:13, from source/calculators/parsimony.h:14, from source/calculators/parsimony.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/treecalculator.h:13, from source/calculators/parsimony.h:14, from source/calculators/parsimony.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/coverage.h:13, from source/calculators/coverage.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/coverage.h:13, from source/calculators/coverage.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/coverage.h:13, from source/calculators/coverage.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/simpson.h:16, from source/calculators/simpson.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/simpson.h:16, from source/calculators/simpson.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/simpson.h:16, from source/calculators/simpson.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/mempearson.o source/calculators/mempearson.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/logsd.o source/calculators/logsd.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/mempearson.h:15, from source/calculators/mempearson.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/mempearson.h:15, from source/calculators/mempearson.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/mempearson.h:15, from source/calculators/mempearson.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/goodscoverage.o source/calculators/goodscoverage.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/memchord.o source/calculators/memchord.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/logsd.h:12, from source/calculators/logsd.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/logsd.h:12, from source/calculators/logsd.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/logsd.h:12, from source/calculators/logsd.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/manhattan.o source/calculators/manhattan.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/memchord.h:14, from source/calculators/memchord.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/memchord.h:14, from source/calculators/memchord.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/memchord.h:14, from source/calculators/memchord.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/goodscoverage.h:12, from source/calculators/goodscoverage.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/goodscoverage.h:12, from source/calculators/goodscoverage.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/goodscoverage.h:12, from source/calculators/goodscoverage.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/geom.o source/calculators/geom.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/jackknife.o source/calculators/jackknife.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/manhattan.h:14, from source/calculators/manhattan.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/manhattan.h:14, from source/calculators/manhattan.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/manhattan.h:14, from source/calculators/manhattan.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/whittaker.o source/calculators/whittaker.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/geom.h:12, from source/calculators/geom.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/geom.h:12, from source/calculators/geom.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/geom.h:12, from source/calculators/geom.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/jackknife.h:13, from source/calculators/jackknife.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/jackknife.h:13, from source/calculators/jackknife.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/jackknife.h:13, from source/calculators/jackknife.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/whittaker.h:11, from source/calculators/whittaker.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/whittaker.h:11, from source/calculators/whittaker.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/whittaker.h:11, from source/calculators/whittaker.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/efron.o source/calculators/efron.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/bootstrap.o source/calculators/bootstrap.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedsobs.o source/calculators/sharedsobs.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/efron.h:13, from source/calculators/efron.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/efron.h:13, from source/calculators/efron.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/efron.h:13, from source/calculators/efron.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/bootstrap.h:15, from source/calculators/bootstrap.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/bootstrap.h:15, from source/calculators/bootstrap.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/bootstrap.h:15, from source/calculators/bootstrap.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsobs.h:16, from source/calculators/sharedsobs.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsobs.h:16, from source/calculators/sharedsobs.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsobs.h:16, from source/calculators/sharedsobs.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedkstest.o source/calculators/sharedkstest.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/memeuclidean.o source/calculators/memeuclidean.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/invsimpson.o source/calculators/invsimpson.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedkstest.h:11, from source/calculators/sharedkstest.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedkstest.h:11, from source/calculators/sharedkstest.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedkstest.h:11, from source/calculators/sharedkstest.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/memeuclidean.h:14, from source/calculators/memeuclidean.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/memeuclidean.h:14, from source/calculators/memeuclidean.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/memeuclidean.h:14, from source/calculators/memeuclidean.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/invsimpson.h:15, from source/calculators/invsimpson.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/invsimpson.h:15, from source/calculators/invsimpson.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/invsimpson.h:15, from source/calculators/invsimpson.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedsorclass.o source/calculators/sharedsorclass.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/ace.o source/calculators/ace.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/prng.o source/calculators/prng.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/shannonrange.o source/calculators/shannonrange.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsorclass.h:16, from source/calculators/sharedsorclass.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsorclass.h:16, from source/calculators/sharedsorclass.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsorclass.h:16, from source/calculators/sharedsorclass.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/ace.h:16, from source/calculators/ace.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/ace.h:16, from source/calculators/ace.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/ace.h:16, from source/calculators/ace.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/npshannon.o source/calculators/npshannon.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shannonrange.h:19, from source/calculators/shannonrange.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shannonrange.h:19, from source/calculators/shannonrange.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shannonrange.h:19, from source/calculators/shannonrange.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/structeuclidean.o source/calculators/structeuclidean.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedchao1.o source/calculators/sharedchao1.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/npshannon.h:16, from source/calculators/npshannon.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/npshannon.h:16, from source/calculators/npshannon.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/npshannon.h:16, from source/calculators/npshannon.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structeuclidean.h:15, from source/calculators/structeuclidean.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structeuclidean.h:15, from source/calculators/structeuclidean.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structeuclidean.h:15, from source/calculators/structeuclidean.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedjest.o source/calculators/sharedjest.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedchao1.h:16, from source/calculators/sharedchao1.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedchao1.h:16, from source/calculators/sharedchao1.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedchao1.h:16, from source/calculators/sharedchao1.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/chao1.o source/calculators/chao1.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedchao1.h:16, from source/calculators/sharedjest.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedchao1.h:16, from source/calculators/sharedjest.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedchao1.h:16, from source/calculators/sharedjest.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/chao1.h:12, from source/calculators/chao1.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/chao1.h:12, from source/calculators/chao1.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/chao1.h:12, from source/calculators/chao1.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/simpsoneven.o source/calculators/simpsoneven.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedsorabund.o source/calculators/sharedsorabund.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/shannon.o source/calculators/shannon.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/simpsoneven.h:13, from source/calculators/simpsoneven.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/simpsoneven.h:13, from source/calculators/simpsoneven.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/simpsoneven.h:13, from source/calculators/simpsoneven.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsorabund.h:16, from source/calculators/sharedsorabund.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsorabund.h:16, from source/calculators/sharedsorabund.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsorabund.h:16, from source/calculators/sharedsorabund.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shannon.h:16, from source/calculators/shannon.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shannon.h:16, from source/calculators/shannon.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shannon.h:16, from source/calculators/shannon.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/spearman.o source/calculators/spearman.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/structchord.o source/calculators/structchord.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/shannoneven.o source/calculators/shannoneven.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/spearman.h:15, from source/calculators/spearman.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/spearman.h:15, from source/calculators/spearman.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/spearman.h:15, from source/calculators/spearman.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structchord.h:14, from source/calculators/structchord.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structchord.h:14, from source/calculators/structchord.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structchord.h:14, from source/calculators/structchord.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/venn.cpp: In member function ‘std::vector > Venn::getPic(std::vector, std::vector)’: source/venn.cpp:77:16: note: variable tracking size limit exceeded with -fvar-tracking-assignments, retrying without vector Venn::getPic(vector lookup, vector vCalcs) { ^~~~ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shannoneven.h:13, from source/calculators/shannoneven.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shannoneven.h:13, from source/calculators/shannoneven.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/shannoneven.h:13, from source/calculators/shannoneven.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedace.o source/calculators/sharedace.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/bstick.o source/calculators/bstick.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedjackknife.o source/calculators/sharedjackknife.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedace.h:15, from source/calculators/sharedace.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedace.h:15, from source/calculators/sharedace.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedace.h:15, from source/calculators/sharedace.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/bstick.h:11, from source/calculators/bstick.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/bstick.h:11, from source/calculators/bstick.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/bstick.h:11, from source/calculators/bstick.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjackknife.h:13, from source/calculators/sharedjackknife.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjackknife.h:13, from source/calculators/sharedjackknife.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjackknife.h:13, from source/calculators/sharedjackknife.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/solow.o source/calculators/solow.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedjsd.o source/calculators/sharedjsd.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedsobscollectsummary.o source/calculators/sharedsobscollectsummary.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/hellinger.o source/calculators/hellinger.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/solow.h:13, from source/calculators/solow.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/solow.h:13, from source/calculators/solow.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/solow.h:13, from source/calculators/solow.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjsd.h:12, from source/calculators/sharedjsd.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjsd.h:12, from source/calculators/sharedjsd.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedjsd.h:12, from source/calculators/sharedjsd.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsobscollectsummary.h:15, from source/calculators/sharedsobscollectsummary.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsobscollectsummary.h:15, from source/calculators/sharedsobscollectsummary.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsobscollectsummary.h:15, from source/calculators/sharedsobscollectsummary.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/odum.o source/calculators/odum.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/structpearson.o source/calculators/structpearson.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/hellinger.h:14, from source/calculators/hellinger.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/hellinger.h:14, from source/calculators/hellinger.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/hellinger.h:14, from source/calculators/hellinger.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/heip.o source/calculators/heip.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/structchi2.o source/calculators/structchi2.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/odum.h:15, from source/calculators/odum.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/odum.h:15, from source/calculators/odum.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/odum.h:15, from source/calculators/odum.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structpearson.h:15, from source/calculators/structpearson.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structpearson.h:15, from source/calculators/structpearson.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structpearson.h:15, from source/calculators/structpearson.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedlennon.o source/calculators/sharedlennon.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/heip.h:13, from source/calculators/heip.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/heip.h:13, from source/calculators/heip.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/heip.h:13, from source/calculators/heip.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structchi2.h:14, from source/calculators/structchi2.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structchi2.h:14, from source/calculators/structchi2.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structchi2.h:14, from source/calculators/structchi2.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/uvest.o source/calculators/uvest.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/memchi2.o source/calculators/memchi2.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedthetan.o source/calculators/sharedthetan.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedlennon.h:14, from source/calculators/sharedlennon.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedlennon.h:14, from source/calculators/sharedlennon.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedlennon.h:14, from source/calculators/sharedlennon.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/uvest.h:16, from source/calculators/uvest.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/uvest.h:16, from source/calculators/uvest.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/uvest.h:16, from source/calculators/uvest.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/unweighted.o source/calculators/unweighted.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/memchi2.h:15, from source/calculators/memchi2.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/memchi2.h:15, from source/calculators/memchi2.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/memchi2.h:15, from source/calculators/memchi2.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedthetan.h:16, from source/calculators/sharedthetan.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedthetan.h:16, from source/calculators/sharedthetan.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedthetan.h:16, from source/calculators/sharedthetan.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/boneh.o source/calculators/boneh.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedsorest.o source/calculators/sharedsorest.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/speciesprofile.o source/calculators/speciesprofile.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/treecalculator.h:13, from source/calculators/unweighted.h:14, from source/calculators/unweighted.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/treecalculator.h:13, from source/calculators/unweighted.h:14, from source/calculators/unweighted.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/treecalculator.h:13, from source/calculators/unweighted.h:14, from source/calculators/unweighted.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/boneh.h:13, from source/calculators/boneh.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/boneh.h:13, from source/calculators/boneh.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/boneh.h:13, from source/calculators/boneh.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsorest.h:16, from source/calculators/sharedsorest.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsorest.h:16, from source/calculators/sharedsorest.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedsorest.h:16, from source/calculators/sharedsorest.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/speciesprofile.h:14, from source/calculators/speciesprofile.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/speciesprofile.h:14, from source/calculators/speciesprofile.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/speciesprofile.h:14, from source/calculators/speciesprofile.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/soergel.o source/calculators/soergel.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedkulczynskicody.o source/calculators/sharedkulczynskicody.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedmarczewski.o source/calculators/sharedmarczewski.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/soergel.h:14, from source/calculators/soergel.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/soergel.h:14, from source/calculators/soergel.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/soergel.h:14, from source/calculators/soergel.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedkulczynskicody.h:14, from source/calculators/sharedkulczynskicody.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedkulczynskicody.h:14, from source/calculators/sharedkulczynskicody.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedkulczynskicody.h:14, from source/calculators/sharedkulczynskicody.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedmarczewski.h:13, from source/calculators/sharedmarczewski.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedmarczewski.h:13, from source/calculators/sharedmarczewski.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedmarczewski.h:13, from source/calculators/sharedmarczewski.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/structkulczynski.o source/calculators/structkulczynski.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedrjsd.o source/calculators/sharedrjsd.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/weighted.o source/calculators/weighted.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structkulczynski.h:14, from source/calculators/structkulczynski.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structkulczynski.h:14, from source/calculators/structkulczynski.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/structkulczynski.h:14, from source/calculators/structkulczynski.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedrjsd.h:12, from source/calculators/sharedrjsd.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedrjsd.h:12, from source/calculators/sharedrjsd.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedrjsd.h:12, from source/calculators/sharedrjsd.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/treecalculator.h:13, from source/calculators/weighted.h:14, from source/calculators/weighted.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/treecalculator.h:13, from source/calculators/weighted.h:14, from source/calculators/weighted.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/treecalculator.h:13, from source/calculators/weighted.h:14, from source/calculators/weighted.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedbraycurtis.o source/calculators/sharedbraycurtis.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/gower.o source/calculators/gower.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/sharedochiai.o source/calculators/sharedochiai.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedbraycurtis.h:11, from source/calculators/sharedbraycurtis.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedbraycurtis.h:11, from source/calculators/sharedbraycurtis.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedbraycurtis.h:11, from source/calculators/sharedbraycurtis.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/gower.h:14, from source/calculators/gower.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/gower.h:14, from source/calculators/gower.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/gower.h:14, from source/calculators/gower.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedochiai.h:12, from source/calculators/sharedochiai.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedochiai.h:12, from source/calculators/sharedochiai.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/sharedochiai.h:12, from source/calculators/sharedochiai.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/calculator.o source/calculators/calculator.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/chimera/pintail.o source/chimera/pintail.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/chimera/myPerseus.o source/chimera/myPerseus.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/calculator.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/calculator.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/calculators/calculator.h:5, from source/calculators/calculator.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/pintail.h:13, from source/chimera/pintail.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/pintail.h:13, from source/chimera/pintail.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/pintail.h:13, from source/chimera/pintail.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/chimera/myPerseus.h:14, from source/chimera/myPerseus.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/chimera/myPerseus.h:14, from source/chimera/myPerseus.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/chimera/myPerseus.h:14, from source/chimera/myPerseus.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/chimera/bellerophon.o source/chimera/bellerophon.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/chimera/maligner.o source/chimera/maligner.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/bellerophon.h:14, from source/chimera/bellerophon.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/bellerophon.h:14, from source/chimera/bellerophon.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/bellerophon.h:14, from source/chimera/bellerophon.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/decalc.h:12, from source/chimera/maligner.h:12, from source/chimera/maligner.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/decalc.h:12, from source/chimera/maligner.h:12, from source/chimera/maligner.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/decalc.h:12, from source/chimera/maligner.h:12, from source/chimera/maligner.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/chimera/chimeraslayer.o source/chimera/chimeraslayer.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/chimeraslayer.h:14, from source/chimera/chimeraslayer.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/chimeraslayer.h:14, from source/chimera/chimeraslayer.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/chimeraslayer.h:14, from source/chimera/chimeraslayer.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/chimera/chimerarealigner.o source/chimera/chimerarealigner.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/chimerarealigner.h:13, from source/chimera/chimerarealigner.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/chimerarealigner.h:13, from source/chimera/chimerarealigner.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/chimerarealigner.h:13, from source/chimera/chimerarealigner.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/chimera/slayer.o source/chimera/slayer.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/chimera/ccode.o source/chimera/ccode.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/chimera/chimeracheckrdp.o source/chimera/chimeracheckrdp.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/chimera/slayer.h:13, from source/chimera/slayer.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/chimera/slayer.h:13, from source/chimera/slayer.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/chimera/slayer.h:13, from source/chimera/slayer.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/ccode.h:13, from source/chimera/ccode.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/ccode.h:13, from source/chimera/ccode.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/ccode.h:13, from source/chimera/ccode.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/chimeracheckrdp.h:14, from source/chimera/chimeracheckrdp.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/chimeracheckrdp.h:14, from source/chimera/chimeracheckrdp.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/chimeracheckrdp.h:14, from source/chimera/chimeracheckrdp.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/chimera/mothurchimera.o source/chimera/mothurchimera.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/mothurchimera.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/mothurchimera.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/mothurchimera.h:14, from source/chimera/mothurchimera.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/chimera/decalc.o source/chimera/decalc.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/classifier/classify.o source/classifier/classify.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/classifier/phylosummary.o source/classifier/phylosummary.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/decalc.h:12, from source/chimera/decalc.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/decalc.h:12, from source/chimera/decalc.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/chimera/decalc.h:12, from source/chimera/decalc.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/classifier/taxonomyequalizer.o source/classifier/taxonomyequalizer.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/classify.h:16, from source/classifier/classify.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/classify.h:16, from source/classifier/classify.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/classify.h:16, from source/classifier/classify.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/phylosummary.h:13, from source/classifier/phylosummary.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/phylosummary.h:13, from source/classifier/phylosummary.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/phylosummary.h:13, from source/classifier/phylosummary.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/taxonomyequalizer.h:14, from source/classifier/taxonomyequalizer.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/taxonomyequalizer.h:14, from source/classifier/taxonomyequalizer.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/taxonomyequalizer.h:14, from source/classifier/taxonomyequalizer.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/classifier/kmernode.o source/classifier/kmernode.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/classifier/phylotree.o source/classifier/phylotree.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/kmernode.h:14, from source/classifier/kmernode.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/kmernode.h:14, from source/classifier/kmernode.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/kmernode.h:14, from source/classifier/kmernode.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/phylotree.h:13, from source/classifier/phylotree.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/phylotree.h:13, from source/classifier/phylotree.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/phylotree.h:13, from source/classifier/phylotree.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/classifier/aligntree.o source/classifier/aligntree.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/classifier/kmertree.o source/classifier/kmertree.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/classifier/knn.o source/classifier/knn.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/alignnode.h:13, from source/classifier/aligntree.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/alignnode.h:13, from source/classifier/aligntree.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/alignnode.h:13, from source/classifier/aligntree.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/kmernode.h:14, from source/classifier/kmertree.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/kmernode.h:14, from source/classifier/kmertree.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/kmernode.h:14, from source/classifier/kmertree.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/knn.h:13, from source/classifier/knn.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/knn.h:13, from source/classifier/knn.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/knn.h:13, from source/classifier/knn.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/classifier/alignnode.o source/classifier/alignnode.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/classifier/bayesian.o source/classifier/bayesian.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/classifier/taxonomynode.o source/classifier/taxonomynode.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/clearcut/distclearcut.o source/clearcut/distclearcut.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/clearcut/clearcut.o source/clearcut/clearcut.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/alignnode.h:13, from source/classifier/alignnode.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/alignnode.h:13, from source/classifier/alignnode.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/alignnode.h:13, from source/classifier/alignnode.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/bayesian.h:13, from source/classifier/bayesian.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/bayesian.h:13, from source/classifier/bayesian.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/bayesian.h:13, from source/classifier/bayesian.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/taxonomynode.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/taxonomynode.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/classifier/taxonomynode.h:15, from source/classifier/taxonomynode.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/clearcut/fasta.o source/clearcut/fasta.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/clearcut/dmat.o source/clearcut/dmat.cpp source/clearcut/dmat.cpp: In function ‘DMAT* NJ_parse_distance_matrix(NJ_ARGS*)’: source/clearcut/dmat.cpp:476:36: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%ld\n", &dmat->ntaxa); ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/clearcut/getopt_long.o source/clearcut/getopt_long.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/clearcut/cmdargs.o source/clearcut/cmdargs.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getotuscommand.o source/commands/getotuscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/listseqscommand.o source/commands/listseqscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/clusterdoturcommand.o source/commands/clusterdoturcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/listseqscommand.h:13, from source/commands/listseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/listseqscommand.h:13, from source/commands/listseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/listseqscommand.h:13, from source/commands/listseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clusterdoturcommand.h:13, from source/commands/clusterdoturcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clusterdoturcommand.h:13, from source/commands/clusterdoturcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clusterdoturcommand.h:13, from source/commands/clusterdoturcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getotuscommand.h:15, from source/commands/getotuscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getotuscommand.h:15, from source/commands/getotuscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getotuscommand.h:15, from source/commands/getotuscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getlistcountcommand.o source/commands/getlistcountcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getlistcountcommand.h:12, from source/commands/getlistcountcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getlistcountcommand.h:12, from source/commands/getlistcountcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getlistcountcommand.h:12, from source/commands/getlistcountcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/distancecommand.o source/commands/distancecommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/binsequencecommand.o source/commands/binsequencecommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/quitcommand.o source/commands/quitcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/distancecommand.h:13, from source/commands/distancecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/distancecommand.h:13, from source/commands/distancecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/distancecommand.h:13, from source/commands/distancecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/binsequencecommand.h:14, from source/commands/binsequencecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/binsequencecommand.h:14, from source/commands/binsequencecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/binsequencecommand.h:14, from source/commands/binsequencecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/quitcommand.h:12, from source/commands/quitcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/quitcommand.h:12, from source/commands/quitcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/quitcommand.h:12, from source/commands/quitcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/commands/distancecommand.cpp: In member function ‘virtual int DistanceCommand::execute()’: source/commands/distancecommand.cpp:338:45: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(("gzip -v " + outputFile).c_str()); ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/removegroupscommand.o source/commands/removegroupscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/indicatorcommand.o source/commands/indicatorcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removegroupscommand.h:14, from source/commands/removegroupscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removegroupscommand.h:14, from source/commands/removegroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removegroupscommand.h:14, from source/commands/removegroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/indicatorcommand.h:13, from source/commands/indicatorcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/indicatorcommand.h:13, from source/commands/indicatorcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/indicatorcommand.h:13, from source/commands/indicatorcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/mgclustercommand.o source/commands/mgclustercommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/seqsummarycommand.o source/commands/seqsummarycommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mgclustercommand.h:13, from source/commands/mgclustercommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mgclustercommand.h:13, from source/commands/mgclustercommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mgclustercommand.h:13, from source/commands/mgclustercommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/seqsummarycommand.h:13, from source/commands/seqsummarycommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/seqsummarycommand.h:13, from source/commands/seqsummarycommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/seqsummarycommand.h:13, from source/commands/seqsummarycommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/clusterfragmentscommand.o source/commands/clusterfragmentscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/treegroupscommand.o source/commands/treegroupscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clusterfragmentscommand.h:14, from source/commands/clusterfragmentscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clusterfragmentscommand.h:14, from source/commands/clusterfragmentscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clusterfragmentscommand.h:14, from source/commands/clusterfragmentscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/treegroupscommand.h:13, from source/commands/treegroupscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/treegroupscommand.h:13, from source/commands/treegroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/treegroupscommand.h:13, from source/commands/treegroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/kruskalwalliscommand.o source/commands/kruskalwalliscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getotulabelscommand.o source/commands/getotulabelscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/kruskalwalliscommand.h:11, from source/commands/kruskalwalliscommand.cpp:8: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/kruskalwalliscommand.h:11, from source/commands/kruskalwalliscommand.cpp:8: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/kruskalwalliscommand.h:11, from source/commands/kruskalwalliscommand.cpp:8: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getotulabelscommand.h:13, from source/commands/getotulabelscommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getotulabelscommand.h:13, from source/commands/getotulabelscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getotulabelscommand.h:13, from source/commands/getotulabelscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/removeseqscommand.o source/commands/removeseqscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removeseqscommand.h:13, from source/commands/removeseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removeseqscommand.h:13, from source/commands/removeseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removeseqscommand.h:13, from source/commands/removeseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/venncommand.o source/commands/venncommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/renameseqscommand.o source/commands/renameseqscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/venncommand.h:12, from source/commands/venncommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/venncommand.h:12, from source/commands/venncommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/venncommand.h:12, from source/commands/venncommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/renameseqscommand.h:12, from source/commands/renameseqscommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/renameseqscommand.h:12, from source/commands/renameseqscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/renameseqscommand.h:12, from source/commands/renameseqscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/makegroupcommand.o source/commands/makegroupcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makegroupcommand.h:13, from source/commands/makegroupcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makegroupcommand.h:13, from source/commands/makegroupcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makegroupcommand.h:13, from source/commands/makegroupcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/deuniqueseqscommand.o source/commands/deuniqueseqscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/unifracunweightedcommand.o source/commands/unifracunweightedcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/deuniqueseqscommand.h:12, from source/commands/deuniqueseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/deuniqueseqscommand.h:12, from source/commands/deuniqueseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/deuniqueseqscommand.h:12, from source/commands/deuniqueseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/unifracunweightedcommand.h:13, from source/commands/unifracunweightedcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/unifracunweightedcommand.h:13, from source/commands/unifracunweightedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/unifracunweightedcommand.h:13, from source/commands/unifracunweightedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/makefilecommand.o source/commands/makefilecommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getgroupscommand.o source/commands/getgroupscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makefilecommand.h:12, from source/commands/makefilecommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makefilecommand.h:12, from source/commands/makefilecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makefilecommand.h:12, from source/commands/makefilecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/commands/makefilecommand.cpp: In member function ‘virtual int MakeFileCommand::execute()’: source/commands/makefilecommand.cpp:146:36: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(findCommand.c_str()); ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getgroupscommand.h:14, from source/commands/getgroupscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getgroupscommand.h:14, from source/commands/getgroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getgroupscommand.h:14, from source/commands/getgroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/listotulabelscommand.o source/commands/listotulabelscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/listotulabelscommand.h:13, from source/commands/listotulabelscommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/listotulabelscommand.h:13, from source/commands/listotulabelscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/listotulabelscommand.h:13, from source/commands/listotulabelscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/sensspeccommand.o source/commands/sensspeccommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/sensspeccommand.h:14, from source/commands/sensspeccommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/sensspeccommand.h:14, from source/commands/sensspeccommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/sensspeccommand.h:14, from source/commands/sensspeccommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/summaryqualcommand.o source/commands/summaryqualcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summaryqualcommand.h:14, from source/commands/summaryqualcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summaryqualcommand.h:14, from source/commands/summaryqualcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summaryqualcommand.h:14, from source/commands/summaryqualcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/removerarecommand.o source/commands/removerarecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removerarecommand.h:14, from source/commands/removerarecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removerarecommand.h:14, from source/commands/removerarecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removerarecommand.h:14, from source/commands/removerarecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/unifracweightedcommand.o source/commands/unifracweightedcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/unifracweightedcommand.h:13, from source/commands/unifracweightedcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/unifracweightedcommand.h:13, from source/commands/unifracweightedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/unifracweightedcommand.h:13, from source/commands/unifracweightedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getcoremicrobiomecommand.o source/commands/getcoremicrobiomecommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/createdatabasecommand.o source/commands/createdatabasecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getcoremicrobiomecommand.h:14, from source/commands/getcoremicrobiomecommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getcoremicrobiomecommand.h:14, from source/commands/getcoremicrobiomecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getcoremicrobiomecommand.h:14, from source/commands/getcoremicrobiomecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/createdatabasecommand.h:12, from source/commands/createdatabasecommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/createdatabasecommand.h:12, from source/commands/createdatabasecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/createdatabasecommand.h:12, from source/commands/createdatabasecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/splitgroupscommand.o source/commands/splitgroupscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/parselistscommand.o source/commands/parselistscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/splitgroupscommand.h:17, from source/commands/splitgroupscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/splitgroupscommand.h:17, from source/commands/splitgroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/splitgroupscommand.h:17, from source/commands/splitgroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/parselistscommand.h:12, from source/commands/parselistscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/parselistscommand.h:12, from source/commands/parselistscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/parselistscommand.h:12, from source/commands/parselistscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/normalizesharedcommand.o source/commands/normalizesharedcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/heatmapsimcommand.o source/commands/heatmapsimcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/normalizesharedcommand.h:13, from source/commands/normalizesharedcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/normalizesharedcommand.h:13, from source/commands/normalizesharedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/normalizesharedcommand.h:13, from source/commands/normalizesharedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/heatmapsimcommand.h:13, from source/commands/heatmapsimcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/heatmapsimcommand.h:13, from source/commands/heatmapsimcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/heatmapsimcommand.h:13, from source/commands/heatmapsimcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/clustercommand.o source/commands/clustercommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/degapseqscommand.o source/commands/degapseqscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clustercommand.h:12, from source/commands/clustercommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clustercommand.h:12, from source/commands/clustercommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clustercommand.h:12, from source/commands/clustercommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/commands/clustercommand.cpp: In member function ‘int ClusterCommand::vsearchDriver(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string)’: source/commands/clustercommand.cpp:573:38: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(commandString.c_str()); ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/degapseqscommand.h:14, from source/commands/degapseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/degapseqscommand.h:14, from source/commands/degapseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/degapseqscommand.h:14, from source/commands/degapseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/summarytaxcommand.o source/commands/summarytaxcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/clustersplitcommand.o source/commands/clustersplitcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summarytaxcommand.h:13, from source/commands/summarytaxcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summarytaxcommand.h:13, from source/commands/summarytaxcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summarytaxcommand.h:13, from source/commands/summarytaxcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clustersplitcommand.h:13, from source/commands/clustersplitcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clustersplitcommand.h:13, from source/commands/clustersplitcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clustersplitcommand.h:13, from source/commands/clustersplitcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/systemcommand.o source/commands/systemcommand.cpp source/commands/clustersplitcommand.cpp: In member function ‘int ClusterSplitCommand::vsearchDriver(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, double)’: source/commands/clustersplitcommand.cpp:1502:38: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(commandString.c_str()); ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/rarefactsharedcommand.o source/commands/rarefactsharedcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/systemcommand.h:13, from source/commands/systemcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/systemcommand.h:13, from source/commands/systemcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/systemcommand.h:13, from source/commands/systemcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/commands/systemcommand.cpp: In member function ‘virtual int SystemCommand::execute()’: source/commands/systemcommand.cpp:101:26: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/rarefactsharedcommand.h:12, from source/commands/rarefactsharedcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/rarefactsharedcommand.h:12, from source/commands/rarefactsharedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/rarefactsharedcommand.h:12, from source/commands/rarefactsharedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/trimseqscommand.o source/commands/trimseqscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/otuhierarchycommand.o source/commands/otuhierarchycommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/otuhierarchycommand.h:12, from source/commands/otuhierarchycommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/otuhierarchycommand.h:12, from source/commands/otuhierarchycommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/otuhierarchycommand.h:12, from source/commands/otuhierarchycommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/trimseqscommand.h:13, from source/commands/trimseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/trimseqscommand.h:13, from source/commands/trimseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/trimseqscommand.h:13, from source/commands/trimseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getrelabundcommand.o source/commands/getrelabundcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getrelabundcommand.h:13, from source/commands/getrelabundcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getrelabundcommand.h:13, from source/commands/getrelabundcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getrelabundcommand.h:13, from source/commands/getrelabundcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/removelineagecommand.o source/commands/removelineagecommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/chimeraccodecommand.o source/commands/chimeraccodecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removelineagecommand.h:13, from source/commands/removelineagecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removelineagecommand.h:13, from source/commands/removelineagecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removelineagecommand.h:13, from source/commands/removelineagecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeraccodecommand.h:13, from source/commands/chimeraccodecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeraccodecommand.h:13, from source/commands/chimeraccodecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeraccodecommand.h:13, from source/commands/chimeraccodecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/chimerabellerophoncommand.o source/commands/chimerabellerophoncommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimerabellerophoncommand.h:13, from source/commands/chimerabellerophoncommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimerabellerophoncommand.h:13, from source/commands/chimerabellerophoncommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimerabellerophoncommand.h:13, from source/commands/chimerabellerophoncommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getsharedotucommand.o source/commands/getsharedotucommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getsharedotucommand.h:13, from source/commands/getsharedotucommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getsharedotucommand.h:13, from source/commands/getsharedotucommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getsharedotucommand.h:13, from source/commands/getsharedotucommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/classifyseqscommand.o source/commands/classifyseqscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/countgroupscommand.o source/commands/countgroupscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifyseqscommand.h:14, from source/commands/classifyseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifyseqscommand.h:14, from source/commands/classifyseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifyseqscommand.h:14, from source/commands/classifyseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/rarefactcommand.o source/commands/rarefactcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/countgroupscommand.h:13, from source/commands/countgroupscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/countgroupscommand.h:13, from source/commands/countgroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/countgroupscommand.h:13, from source/commands/countgroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/rarefactcommand.h:12, from source/commands/rarefactcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/rarefactcommand.h:12, from source/commands/rarefactcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/rarefactcommand.h:12, from source/commands/rarefactcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/removeotulabelscommand.o source/commands/removeotulabelscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removeotulabelscommand.h:13, from source/commands/removeotulabelscommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removeotulabelscommand.h:13, from source/commands/removeotulabelscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removeotulabelscommand.h:13, from source/commands/removeotulabelscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/screenseqscommand.o source/commands/screenseqscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/screenseqscommand.h:12, from source/commands/screenseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/screenseqscommand.h:12, from source/commands/screenseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/screenseqscommand.h:12, from source/commands/screenseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/parsimonycommand.o source/commands/parsimonycommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/sracommand.o source/commands/sracommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/parsimonycommand.h:12, from source/commands/parsimonycommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/parsimonycommand.h:12, from source/commands/parsimonycommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/parsimonycommand.h:12, from source/commands/parsimonycommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sracommand.h:12, from source/commands/sracommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sracommand.h:12, from source/commands/sracommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sracommand.h:12, from source/commands/sracommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getdistscommand.o source/commands/getdistscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getdistscommand.h:12, from source/commands/getdistscommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getdistscommand.h:12, from source/commands/getdistscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getdistscommand.h:12, from source/commands/getdistscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/homovacommand.o source/commands/homovacommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/homovacommand.h:14, from source/commands/homovacommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/homovacommand.h:14, from source/commands/homovacommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/homovacommand.h:14, from source/commands/homovacommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/sffmultiplecommand.o source/commands/sffmultiplecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sffmultiplecommand.h:12, from source/commands/sffmultiplecommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sffmultiplecommand.h:12, from source/commands/sffmultiplecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sffmultiplecommand.h:12, from source/commands/sffmultiplecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/splitabundcommand.o source/commands/splitabundcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/primerdesigncommand.o source/commands/primerdesigncommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/splitabundcommand.h:20, from source/commands/splitabundcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/splitabundcommand.h:20, from source/commands/splitabundcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/splitabundcommand.h:20, from source/commands/splitabundcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/primerdesigncommand.h:12, from source/commands/primerdesigncommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/primerdesigncommand.h:12, from source/commands/primerdesigncommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/primerdesigncommand.h:12, from source/commands/primerdesigncommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getrabundcommand.o source/commands/getrabundcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getrabundcommand.h:14, from source/commands/getrabundcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getrabundcommand.h:14, from source/commands/getrabundcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getrabundcommand.h:14, from source/commands/getrabundcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/catchallcommand.o source/commands/catchallcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/catchallcommand.h:13, from source/commands/catchallcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/catchallcommand.h:13, from source/commands/catchallcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/catchallcommand.h:13, from source/commands/catchallcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/commands/catchallcommand.cpp: In member function ‘virtual int CatchAllCommand::execute()’: source/commands/catchallcommand.cpp:332:38: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(catchAllCommand.c_str()); ^ source/commands/catchallcommand.cpp:395:38: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(catchAllCommand.c_str()); ^ source/commands/catchallcommand.cpp:480:36: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(catchAllCommand.c_str()); ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/deconvolutecommand.o source/commands/deconvolutecommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/mantelcommand.o source/commands/mantelcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/deconvolutecommand.h:12, from source/commands/deconvolutecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/deconvolutecommand.h:12, from source/commands/deconvolutecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/deconvolutecommand.h:12, from source/commands/deconvolutecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mantelcommand.h:13, from source/commands/mantelcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mantelcommand.h:13, from source/commands/mantelcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mantelcommand.h:13, from source/commands/mantelcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/matrixoutputcommand.o source/commands/matrixoutputcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/matrixoutputcommand.h:12, from source/commands/matrixoutputcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/matrixoutputcommand.h:12, from source/commands/matrixoutputcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/matrixoutputcommand.h:12, from source/commands/matrixoutputcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/mergetaxsummarycommand.o source/commands/mergetaxsummarycommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/makelookupcommand.o source/commands/makelookupcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getcurrentcommand.o source/commands/getcurrentcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/mergetaxsummarycommand.h:12, from source/commands/mergetaxsummarycommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/mergetaxsummarycommand.h:12, from source/commands/mergetaxsummarycommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/mergetaxsummarycommand.h:12, from source/commands/mergetaxsummarycommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makelookupcommand.h:12, from source/commands/makelookupcommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makelookupcommand.h:12, from source/commands/makelookupcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makelookupcommand.h:12, from source/commands/makelookupcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getcurrentcommand.h:13, from source/commands/getcurrentcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getcurrentcommand.h:13, from source/commands/getcurrentcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getcurrentcommand.h:13, from source/commands/getcurrentcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/summarysharedcommand.o source/commands/summarysharedcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getlineagecommand.o source/commands/getlineagecommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/nmdscommand.o source/commands/nmdscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summarysharedcommand.h:13, from source/commands/summarysharedcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summarysharedcommand.h:13, from source/commands/summarysharedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summarysharedcommand.h:13, from source/commands/summarysharedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/chimeravsearchcommand.o source/commands/chimeravsearchcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getlineagecommand.h:13, from source/commands/getlineagecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getlineagecommand.h:13, from source/commands/getlineagecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getlineagecommand.h:13, from source/commands/getlineagecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/nmdscommand.h:13, from source/commands/nmdscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/nmdscommand.h:13, from source/commands/nmdscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/nmdscommand.h:13, from source/commands/nmdscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/chimeravsearchcommand.h:12, from source/commands/chimeravsearchcommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/chimeravsearchcommand.h:12, from source/commands/chimeravsearchcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/chimeravsearchcommand.h:12, from source/commands/chimeravsearchcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/commands/chimeravsearchcommand.cpp: In member function ‘int ChimeraVsearchCommand::driver(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, int&)’: source/commands/chimeravsearchcommand.cpp:1362:38: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(commandString.c_str()); ^ In file included from /usr/include/string.h:635:0, from /usr/include/boost/range/detail/implementation_help.hpp:18, from /usr/include/boost/range/end.hpp:24, from /usr/include/boost/range/functions.hpp:19, from /usr/include/boost/range/iterator_range_core.hpp:38, from /usr/include/boost/range/iterator_range.hpp:13, from /usr/include/boost/iostreams/traits.hpp:39, from /usr/include/boost/iostreams/pipeline.hpp:18, from /usr/include/boost/iostreams/detail/push.hpp:22, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/chimeravsearchcommand.h:12, from source/commands/chimeravsearchcommand.cpp:9: In function ‘char* strncat(char*, const char*, size_t)’, inlined from ‘int ChimeraVsearchCommand::driver(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, int&)’ at source/commands/chimeravsearchcommand.cpp:1239:64: /usr/include/arm-linux-gnueabihf/bits/string3.h:156:71: warning: call to void* __builtin___memcpy_chk(void*, const void*, unsigned int, unsigned int) will always overflow destination buffer return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); ^ In function ‘char* strncat(char*, const char*, size_t)’, inlined from ‘int ChimeraVsearchCommand::driver(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, int&)’ at source/commands/chimeravsearchcommand.cpp:1247:67: /usr/include/arm-linux-gnueabihf/bits/string3.h:156:71: warning: call to void* __builtin___memcpy_chk(void*, const void*, unsigned int, unsigned int) will always overflow destination buffer return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); ^ In function ‘char* strncat(char*, const char*, size_t)’, inlined from ‘int ChimeraVsearchCommand::driver(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, int&)’ at source/commands/chimeravsearchcommand.cpp:1320:70: /usr/include/arm-linux-gnueabihf/bits/string3.h:156:71: warning: call to void* __builtin___memcpy_chk(void*, const void*, unsigned int, unsigned int) will always overflow destination buffer return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getcommandinfocommand.o source/commands/getcommandinfocommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getcommandinfocommand.h:15, from source/commands/getcommandinfocommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getcommandinfocommand.h:15, from source/commands/getcommandinfocommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getcommandinfocommand.h:15, from source/commands/getcommandinfocommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/collectsharedcommand.o source/commands/collectsharedcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/collectsharedcommand.h:13, from source/commands/collectsharedcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/collectsharedcommand.h:13, from source/commands/collectsharedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/collectsharedcommand.h:13, from source/commands/collectsharedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/mimarksattributescommand.o source/commands/mimarksattributescommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mimarksattributescommand.h:12, from source/commands/mimarksattributescommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mimarksattributescommand.h:12, from source/commands/mimarksattributescommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mimarksattributescommand.h:12, from source/commands/mimarksattributescommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getsabundcommand.o source/commands/getsabundcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getsabundcommand.h:14, from source/commands/getsabundcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getsabundcommand.h:14, from source/commands/getsabundcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getsabundcommand.h:14, from source/commands/getsabundcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/lefsecommand.o source/commands/lefsecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/lefsecommand.h:12, from source/commands/lefsecommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/lefsecommand.h:12, from source/commands/lefsecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/lefsecommand.h:12, from source/commands/lefsecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/removeotuscommand.o source/commands/removeotuscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removeotuscommand.h:13, from source/commands/removeotuscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removeotuscommand.h:13, from source/commands/removeotuscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removeotuscommand.h:13, from source/commands/removeotuscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/phylodiversitycommand.o source/commands/phylodiversitycommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/phylodiversitycommand.h:13, from source/commands/phylodiversitycommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/phylodiversitycommand.h:13, from source/commands/phylodiversitycommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/phylodiversitycommand.h:13, from source/commands/phylodiversitycommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/filtersharedcommand.o source/commands/filtersharedcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/pcoacommand.o source/commands/pcoacommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/filtersharedcommand.h:12, from source/commands/filtersharedcommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/filtersharedcommand.h:12, from source/commands/filtersharedcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/filtersharedcommand.h:12, from source/commands/filtersharedcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/pcoacommand.h:13, from source/commands/pcoacommand.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/pcoacommand.h:13, from source/commands/pcoacommand.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/pcoacommand.h:13, from source/commands/pcoacommand.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/filterseqscommand.o source/commands/filterseqscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/mergesfffilecommand.o source/commands/mergesfffilecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/filterseqscommand.h:13, from source/commands/filterseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/filterseqscommand.h:13, from source/commands/filterseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/filterseqscommand.h:13, from source/commands/filterseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mergesfffilecommand.h:12, from source/commands/mergesfffilecommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mergesfffilecommand.h:12, from source/commands/mergesfffilecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mergesfffilecommand.h:12, from source/commands/mergesfffilecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/secondarystructurecommand.o source/commands/secondarystructurecommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/shhhercommand.o source/commands/shhhercommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/secondarystructurecommand.h:13, from source/commands/secondarystructurecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/secondarystructurecommand.h:13, from source/commands/secondarystructurecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/secondarystructurecommand.h:13, from source/commands/secondarystructurecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/shhhercommand.h:13, from source/commands/shhhercommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/shhhercommand.h:13, from source/commands/shhhercommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/shhhercommand.h:13, from source/commands/shhhercommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/pcacommand.o source/commands/pcacommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/metastatscommand.o source/commands/metastatscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/pcacommand.h:13, from source/commands/pcacommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/pcacommand.h:13, from source/commands/pcacommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/pcacommand.h:13, from source/commands/pcacommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/metastatscommand.h:13, from source/commands/metastatscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/metastatscommand.h:13, from source/commands/metastatscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/metastatscommand.h:13, from source/commands/metastatscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/subsamplecommand.o source/commands/subsamplecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/subsamplecommand.h:13, from source/commands/subsamplecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/subsamplecommand.h:13, from source/commands/subsamplecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/subsamplecommand.h:13, from source/commands/subsamplecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/chimeraslayercommand.o source/commands/chimeraslayercommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeraslayercommand.h:13, from source/commands/chimeraslayercommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeraslayercommand.h:13, from source/commands/chimeraslayercommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeraslayercommand.h:13, from source/commands/chimeraslayercommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/chopseqscommand.o source/commands/chopseqscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/chopseqscommand.h:14, from source/commands/chopseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/chopseqscommand.h:14, from source/commands/chopseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/chopseqscommand.h:14, from source/commands/chopseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/makebiomcommand.o source/commands/makebiomcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makebiomcommand.h:13, from source/commands/makebiomcommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makebiomcommand.h:13, from source/commands/makebiomcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makebiomcommand.h:13, from source/commands/makebiomcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/aligncommand.o source/commands/aligncommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/aligncommand.h:12, from source/commands/aligncommand.cpp:17: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/aligncommand.h:12, from source/commands/aligncommand.cpp:17: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/aligncommand.h:12, from source/commands/aligncommand.cpp:17: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/seqerrorcommand.o source/commands/seqerrorcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/seqerrorcommand.h:13, from source/commands/seqerrorcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/seqerrorcommand.h:13, from source/commands/seqerrorcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/seqerrorcommand.h:13, from source/commands/seqerrorcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getlabelcommand.o source/commands/getlabelcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/consensusseqscommand.o source/commands/consensusseqscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/sffinfocommand.o source/commands/sffinfocommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getlabelcommand.h:13, from source/commands/getlabelcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getlabelcommand.h:13, from source/commands/getlabelcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getlabelcommand.h:13, from source/commands/getlabelcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/consensusseqscommand.h:14, from source/commands/consensusseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/consensusseqscommand.h:14, from source/commands/consensusseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/consensusseqscommand.h:14, from source/commands/consensusseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sffinfocommand.h:13, from source/commands/sffinfocommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sffinfocommand.h:13, from source/commands/sffinfocommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sffinfocommand.h:13, from source/commands/sffinfocommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/corraxescommand.o source/commands/corraxescommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/cooccurrencecommand.o source/commands/cooccurrencecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/corraxescommand.h:13, from source/commands/corraxescommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/corraxescommand.h:13, from source/commands/corraxescommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/corraxescommand.h:13, from source/commands/corraxescommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/cooccurrencecommand.h:14, from source/commands/cooccurrencecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/cooccurrencecommand.h:14, from source/commands/cooccurrencecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/cooccurrencecommand.h:14, from source/commands/cooccurrencecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/preclustercommand.o source/commands/preclustercommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/preclustercommand.h:15, from source/commands/preclustercommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/preclustercommand.h:15, from source/commands/preclustercommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/preclustercommand.h:15, from source/commands/preclustercommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/setdircommand.o source/commands/setdircommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setdircommand.h:13, from source/commands/setdircommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setdircommand.h:13, from source/commands/setdircommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setdircommand.h:13, from source/commands/setdircommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/makelefsecommand.o source/commands/makelefsecommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getseqscommand.o source/commands/getseqscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/commands/makelefsecommand.h:12, from source/commands/makelefsecommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/commands/makelefsecommand.h:12, from source/commands/makelefsecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/commands/makelefsecommand.h:12, from source/commands/makelefsecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getseqscommand.h:13, from source/commands/getseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getseqscommand.h:13, from source/commands/getseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getseqscommand.h:13, from source/commands/getseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/setcurrentcommand.o source/commands/setcurrentcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getmetacommunitycommand.o source/commands/getmetacommunitycommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setcurrentcommand.h:14, from source/commands/setcurrentcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setcurrentcommand.h:14, from source/commands/setcurrentcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setcurrentcommand.h:14, from source/commands/setcurrentcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getmetacommunitycommand.h:12, from source/commands/getmetacommunitycommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getmetacommunitycommand.h:12, from source/commands/getmetacommunitycommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getmetacommunitycommand.h:12, from source/commands/getmetacommunitycommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/setseedcommand.o source/commands/setseedcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setseedcommand.h:12, from source/commands/setseedcommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setseedcommand.h:12, from source/commands/setseedcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setseedcommand.h:12, from source/commands/setseedcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/sharedcommand.o source/commands/sharedcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/makecontigscommand.o source/commands/makecontigscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sharedcommand.h:12, from source/commands/sharedcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sharedcommand.h:12, from source/commands/sharedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sharedcommand.h:12, from source/commands/sharedcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makecontigscommand.h:12, from source/commands/makecontigscommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makecontigscommand.h:12, from source/commands/makecontigscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makecontigscommand.h:12, from source/commands/makecontigscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/mergefilecommand.o source/commands/mergefilecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/mergefilecommand.h:13, from source/commands/mergefilecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/mergefilecommand.h:13, from source/commands/mergefilecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/mergefilecommand.h:13, from source/commands/mergefilecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/biominfocommand.o source/commands/biominfocommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/biominfocommand.h:12, from source/commands/biominfocommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/biominfocommand.h:12, from source/commands/biominfocommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/biominfocommand.h:12, from source/commands/biominfocommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/classifyrfsharedcommand.o source/commands/classifyrfsharedcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifyrfsharedcommand.h:12, from source/commands/classifyrfsharedcommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifyrfsharedcommand.h:12, from source/commands/classifyrfsharedcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifyrfsharedcommand.h:12, from source/commands/classifyrfsharedcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/helpcommand.o source/commands/helpcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/helpcommand.h:14, from source/commands/helpcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/helpcommand.h:14, from source/commands/helpcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/helpcommand.h:14, from source/commands/helpcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/pcrseqscommand.o source/commands/pcrseqscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/pcrseqscommand.h:13, from source/commands/pcrseqscommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/pcrseqscommand.h:13, from source/commands/pcrseqscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/pcrseqscommand.h:13, from source/commands/pcrseqscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/anosimcommand.o source/commands/anosimcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/chimeraperseuscommand.o source/commands/chimeraperseuscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/anosimcommand.h:14, from source/commands/anosimcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/anosimcommand.h:14, from source/commands/anosimcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/anosimcommand.h:14, from source/commands/anosimcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeraperseuscommand.h:16, from source/commands/chimeraperseuscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeraperseuscommand.h:16, from source/commands/chimeraperseuscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeraperseuscommand.h:16, from source/commands/chimeraperseuscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/deuniquetreecommand.o source/commands/deuniquetreecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/deuniquetreecommand.h:14, from source/commands/deuniquetreecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/deuniquetreecommand.h:14, from source/commands/deuniquetreecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/deuniquetreecommand.h:14, from source/commands/deuniquetreecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/makefastqcommand.o source/commands/makefastqcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makefastqcommand.h:14, from source/commands/makefastqcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makefastqcommand.h:14, from source/commands/makefastqcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/makefastqcommand.h:14, from source/commands/makefastqcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/trimflowscommand.o source/commands/trimflowscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/trimflowscommand.h:13, from source/commands/trimflowscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/trimflowscommand.h:13, from source/commands/trimflowscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/trimflowscommand.h:13, from source/commands/trimflowscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/classifyotucommand.o source/commands/classifyotucommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifyotucommand.h:13, from source/commands/classifyotucommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifyotucommand.h:13, from source/commands/classifyotucommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifyotucommand.h:13, from source/commands/classifyotucommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/renamefilecommand.o source/commands/renamefilecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/renamefilecommand.h:12, from source/commands/renamefilecommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/renamefilecommand.h:12, from source/commands/renamefilecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/renamefilecommand.h:12, from source/commands/renamefilecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/chimerapintailcommand.o source/commands/chimerapintailcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/sortseqscommand.o source/commands/sortseqscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimerapintailcommand.h:13, from source/commands/chimerapintailcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimerapintailcommand.h:13, from source/commands/chimerapintailcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimerapintailcommand.h:13, from source/commands/chimerapintailcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sortseqscommand.h:15, from source/commands/sortseqscommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sortseqscommand.h:15, from source/commands/sortseqscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sortseqscommand.h:15, from source/commands/sortseqscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/otuassociationcommand.o source/commands/otuassociationcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/otuassociationcommand.h:14, from source/commands/otuassociationcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/otuassociationcommand.h:14, from source/commands/otuassociationcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/otuassociationcommand.h:14, from source/commands/otuassociationcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/removedistscommand.o source/commands/removedistscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removedistscommand.h:12, from source/commands/removedistscommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removedistscommand.h:12, from source/commands/removedistscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/removedistscommand.h:12, from source/commands/removedistscommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/parsefastaqcommand.o source/commands/parsefastaqcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/amovacommand.o source/commands/amovacommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/parsefastaqcommand.h:14, from source/commands/parsefastaqcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/parsefastaqcommand.h:14, from source/commands/parsefastaqcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/parsefastaqcommand.h:14, from source/commands/parsefastaqcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/amovacommand.h:13, from source/commands/amovacommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/amovacommand.h:13, from source/commands/amovacommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/amovacommand.h:13, from source/commands/amovacommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/clearcutcommand.o source/commands/clearcutcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/classifysvmsharedcommand.o source/commands/classifysvmsharedcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clearcutcommand.h:13, from source/commands/clearcutcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clearcutcommand.h:13, from source/commands/clearcutcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/clearcutcommand.h:13, from source/commands/clearcutcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifysvmsharedcommand.h:14, from source/commands/classifysvmsharedcommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifysvmsharedcommand.h:14, from source/commands/classifysvmsharedcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifysvmsharedcommand.h:14, from source/commands/classifysvmsharedcommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/countseqscommand.o source/commands/countseqscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/countseqscommand.h:13, from source/commands/countseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/countseqscommand.h:13, from source/commands/countseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/countseqscommand.h:13, from source/commands/countseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/chimerauchimecommand.o source/commands/chimerauchimecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/chimerauchimecommand.h:14, from source/commands/chimerauchimecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/chimerauchimecommand.h:14, from source/commands/chimerauchimecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/chimerauchimecommand.h:14, from source/commands/chimerauchimecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/commands/chimerauchimecommand.cpp: In member function ‘int ChimeraUchimeCommand::driver(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, int&)’: source/commands/chimerauchimecommand.cpp:1501:32: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(commandString.c_str()); ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/libshuffcommand.o source/commands/libshuffcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/nocommands.o source/commands/nocommands.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/libshuffcommand.h:13, from source/commands/libshuffcommand.cpp:16: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/libshuffcommand.h:13, from source/commands/libshuffcommand.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/libshuffcommand.h:13, from source/commands/libshuffcommand.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getgroupcommand.o source/commands/getgroupcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/nocommands.h:14, from source/commands/nocommands.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/nocommands.h:14, from source/commands/nocommands.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/nocommands.h:14, from source/commands/nocommands.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/string.h:635:0, from /usr/include/boost/range/detail/implementation_help.hpp:18, from /usr/include/boost/range/end.hpp:24, from /usr/include/boost/range/functions.hpp:19, from /usr/include/boost/range/iterator_range_core.hpp:38, from /usr/include/boost/range/iterator_range.hpp:13, from /usr/include/boost/iostreams/traits.hpp:39, from /usr/include/boost/iostreams/pipeline.hpp:18, from /usr/include/boost/iostreams/detail/push.hpp:22, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/chimerauchimecommand.h:14, from source/commands/chimerauchimecommand.cpp:10: In function ‘char* strcpy(char*, const char*)’, inlined from ‘int ChimeraUchimeCommand::driver(std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, std::__cxx11::string, int&)’ at source/commands/chimerauchimecommand.cpp:1472:28: /usr/include/arm-linux-gnueabihf/bits/string3.h:110:63: warning: call to void* __builtin___memcpy_chk(void*, const void*, unsigned int, unsigned int) will always overflow destination buffer return __builtin___strcpy_chk (__dest, __src, __bos (__dest)); ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getgroupcommand.h:13, from source/commands/getgroupcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getgroupcommand.h:13, from source/commands/getgroupcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getgroupcommand.h:13, from source/commands/getgroupcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/chimeracheckcommand.o source/commands/chimeracheckcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeracheckcommand.h:13, from source/commands/chimeracheckcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeracheckcommand.h:13, from source/commands/chimeracheckcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/chimeracheckcommand.h:13, from source/commands/chimeracheckcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getmimarkspackagecommand.o source/commands/getmimarkspackagecommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/pairwiseseqscommand.o source/commands/pairwiseseqscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getmimarkspackagecommand.h:12, from source/commands/getmimarkspackagecommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getmimarkspackagecommand.h:12, from source/commands/getmimarkspackagecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getmimarkspackagecommand.h:12, from source/commands/getmimarkspackagecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/pairwiseseqscommand.h:13, from source/commands/pairwiseseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/pairwiseseqscommand.h:13, from source/commands/pairwiseseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/pairwiseseqscommand.h:13, from source/commands/pairwiseseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/commands/pairwiseseqscommand.cpp: In member function ‘virtual int PairwiseSeqsCommand::execute()’: source/commands/pairwiseseqscommand.cpp:342:46: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(("gzip -v " + outputFile).c_str()); ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/mergegroupscommand.o source/commands/mergegroupscommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mergegroupscommand.h:13, from source/commands/mergegroupscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mergegroupscommand.h:13, from source/commands/mergegroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/mergegroupscommand.h:13, from source/commands/mergegroupscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/getoturepcommand.o source/commands/getoturepcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/setlogfilecommand.o source/commands/setlogfilecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getoturepcommand.h:14, from source/commands/getoturepcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getoturepcommand.h:14, from source/commands/getoturepcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/getoturepcommand.h:14, from source/commands/getoturepcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setlogfilecommand.h:13, from source/commands/setlogfilecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setlogfilecommand.h:13, from source/commands/setlogfilecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/setlogfilecommand.h:13, from source/commands/setlogfilecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/sparcccommand.o source/commands/sparcccommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sparcccommand.h:12, from source/commands/sparcccommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sparcccommand.h:12, from source/commands/sparcccommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/sparcccommand.h:12, from source/commands/sparcccommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/heatmapcommand.o source/commands/heatmapcommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/heatmapcommand.h:14, from source/commands/heatmapcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/heatmapcommand.h:14, from source/commands/heatmapcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/heatmapcommand.h:14, from source/commands/heatmapcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/phylotypecommand.o source/commands/phylotypecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/taxonomyequalizer.h:14, from source/commands/phylotypecommand.h:14, from source/commands/phylotypecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/taxonomyequalizer.h:14, from source/commands/phylotypecommand.h:14, from source/commands/phylotypecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/classifier/taxonomyequalizer.h:14, from source/commands/phylotypecommand.h:14, from source/commands/phylotypecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/newcommandtemplate.o source/commands/newcommandtemplate.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/newcommandtemplate.h:25, from source/commands/newcommandtemplate.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/newcommandtemplate.h:25, from source/commands/newcommandtemplate.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/newcommandtemplate.h:25, from source/commands/newcommandtemplate.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/shhhseqscommand.o source/commands/shhhseqscommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/summarycommand.o source/commands/summarycommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/reversecommand.o source/commands/reversecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/shhhseqscommand.h:13, from source/commands/shhhseqscommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/shhhseqscommand.h:13, from source/commands/shhhseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/shhhseqscommand.h:13, from source/commands/shhhseqscommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summarycommand.h:12, from source/commands/summarycommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summarycommand.h:12, from source/commands/summarycommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/summarycommand.h:12, from source/commands/summarycommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/reversecommand.h:13, from source/commands/reversecommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/reversecommand.h:13, from source/commands/reversecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/reversecommand.h:13, from source/commands/reversecommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/classifytreecommand.o source/commands/classifytreecommand.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifytreecommand.h:12, from source/commands/classifytreecommand.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifytreecommand.h:12, from source/commands/classifytreecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/classifytreecommand.h:12, from source/commands/classifytreecommand.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/commands/collectcommand.o source/commands/collectcommand.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/communitytype/communitytype.o source/communitytype/communitytype.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/collectcommand.h:12, from source/commands/collectcommand.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/collectcommand.h:12, from source/commands/collectcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/commands/command.hpp:16, from source/commands/collectcommand.h:12, from source/commands/collectcommand.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/communitytype.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/communitytype.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/communitytype.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/communitytype/pam.o source/communitytype/pam.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/communitytype/kmeans.o source/communitytype/kmeans.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/pam.h:12, from source/communitytype/pam.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/pam.h:12, from source/communitytype/pam.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/pam.h:12, from source/communitytype/pam.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/kmeans.h:12, from source/communitytype/kmeans.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/kmeans.h:12, from source/communitytype/kmeans.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/kmeans.h:12, from source/communitytype/kmeans.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/communitytype/qFinderDMM.o source/communitytype/qFinderDMM.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/listvector.o source/datastructures/listvector.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/qFinderDMM.h:12, from source/communitytype/qFinderDMM.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/qFinderDMM.h:12, from source/communitytype/qFinderDMM.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/communitytype/communitytype.h:15, from source/communitytype/qFinderDMM.h:12, from source/communitytype/qFinderDMM.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/datastructures/listvector.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/datastructures/listvector.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/datastructures/listvector.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/fastqread.o source/datastructures/fastqread.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/treenode.o source/datastructures/treenode.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fastqread.h:12, from source/datastructures/fastqread.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fastqread.h:12, from source/datastructures/fastqread.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fastqread.h:12, from source/datastructures/fastqread.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treenode.h:13, from source/datastructures/treenode.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treenode.h:13, from source/datastructures/treenode.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treenode.h:13, from source/datastructures/treenode.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/ordervector.o source/datastructures/ordervector.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/qualityscores.o source/datastructures/qualityscores.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sharedrabundfloatvector.o source/datastructures/sharedrabundfloatvector.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/ordervector.hpp:4, from source/datastructures/ordervector.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/ordervector.hpp:4, from source/datastructures/ordervector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/ordervector.hpp:4, from source/datastructures/ordervector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sequence.o source/datastructures/sequence.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/qualityscores.h:16, from source/datastructures/qualityscores.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/qualityscores.h:16, from source/datastructures/qualityscores.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/qualityscores.h:16, from source/datastructures/qualityscores.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedrabundfloatvector.h:14, from source/datastructures/sharedrabundfloatvector.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedrabundfloatvector.h:14, from source/datastructures/sharedrabundfloatvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedrabundfloatvector.h:14, from source/datastructures/sharedrabundfloatvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/flowdata.o source/datastructures/flowdata.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/sequence.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/sequence.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/sequence.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/flowdata.h:13, from source/datastructures/flowdata.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/flowdata.h:13, from source/datastructures/flowdata.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/flowdata.h:13, from source/datastructures/flowdata.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/suffixnodes.o source/datastructures/suffixnodes.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/kmer.o source/datastructures/kmer.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/tree.o source/datastructures/tree.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sharedrabundvector.o source/datastructures/sharedrabundvector.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/suffixnodes.hpp:19, from source/datastructures/suffixnodes.cpp:16: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/suffixnodes.hpp:19, from source/datastructures/suffixnodes.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/suffixnodes.hpp:19, from source/datastructures/suffixnodes.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/kmer.hpp:13, from source/datastructures/kmer.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/kmer.hpp:13, from source/datastructures/kmer.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/kmer.hpp:13, from source/datastructures/kmer.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treenode.h:13, from source/datastructures/tree.h:13, from source/datastructures/tree.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treenode.h:13, from source/datastructures/tree.h:13, from source/datastructures/tree.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treenode.h:13, from source/datastructures/tree.h:13, from source/datastructures/tree.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedrabundvector.h:13, from source/datastructures/sharedrabundvector.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedrabundvector.h:13, from source/datastructures/sharedrabundvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedrabundvector.h:13, from source/datastructures/sharedrabundvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/oligos.o source/datastructures/oligos.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sparsedistancematrix.o source/datastructures/sparsedistancematrix.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/oligos.h:13, from source/datastructures/oligos.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/oligos.h:13, from source/datastructures/oligos.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/oligos.h:13, from source/datastructures/oligos.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sparsedistancematrix.h:12, from source/datastructures/sparsedistancematrix.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sparsedistancematrix.h:12, from source/datastructures/sparsedistancematrix.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sparsedistancematrix.h:12, from source/datastructures/sparsedistancematrix.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sharedordervector.o source/datastructures/sharedordervector.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/fastamap.o source/datastructures/fastamap.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedordervector.h:18, from source/datastructures/sharedordervector.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedordervector.h:18, from source/datastructures/sharedordervector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedordervector.h:18, from source/datastructures/sharedordervector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/alignmentdb.o source/datastructures/alignmentdb.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fastamap.h:13, from source/datastructures/fastamap.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fastamap.h:13, from source/datastructures/fastamap.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fastamap.h:13, from source/datastructures/fastamap.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignmentdb.h:13, from source/datastructures/alignmentdb.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignmentdb.h:13, from source/datastructures/alignmentdb.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignmentdb.h:13, from source/datastructures/alignmentdb.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sparsematrix.o source/datastructures/sparsematrix.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sharedlistvector.o source/datastructures/sharedlistvector.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sequencedb.o source/datastructures/sequencedb.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/kmeralign.o source/datastructures/kmeralign.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sparsematrix.hpp:4, from source/datastructures/sparsematrix.cpp:2: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sparsematrix.hpp:4, from source/datastructures/sparsematrix.cpp:2: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sparsematrix.hpp:4, from source/datastructures/sparsematrix.cpp:2: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/datastructures/sharedlistvector.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/datastructures/sharedlistvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/datastructures/sharedlistvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/sequencedb.h:17, from source/datastructures/sequencedb.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/sequencedb.h:17, from source/datastructures/sequencedb.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/sequencedb.h:17, from source/datastructures/sequencedb.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignment.hpp:16, from source/datastructures/kmeralign.h:17, from source/datastructures/kmeralign.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignment.hpp:16, from source/datastructures/kmeralign.h:17, from source/datastructures/kmeralign.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignment.hpp:16, from source/datastructures/kmeralign.h:17, from source/datastructures/kmeralign.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/blastdb.o source/datastructures/blastdb.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/distancedb.o source/datastructures/distancedb.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/groupmap.o source/datastructures/groupmap.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.hpp:16, from source/datastructures/blastdb.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.hpp:16, from source/datastructures/blastdb.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.hpp:16, from source/datastructures/blastdb.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/datastructures/blastdb.cpp: In member function ‘virtual std::vector BlastDB::findClosestSequences(Sequence*, int)’: source/datastructures/blastdb.cpp:230:31: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(blastCommand.c_str()); ^ source/datastructures/blastdb.cpp: In member function ‘virtual std::vector BlastDB::findClosestMegaBlast(Sequence*, int, int)’: source/datastructures/blastdb.cpp:295:31: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(blastCommand.c_str()); ^ source/datastructures/blastdb.cpp: In member function ‘virtual void BlastDB::generateDB()’: source/datastructures/blastdb.cpp:366:34: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(formatdbCommand.c_str()); // to get the right sequence names, i think. -p F ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.hpp:16, from source/datastructures/distancedb.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.hpp:16, from source/datastructures/distancedb.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.hpp:16, from source/datastructures/distancedb.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/groupmap.h:12, from source/datastructures/groupmap.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/groupmap.h:12, from source/datastructures/groupmap.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/groupmap.h:12, from source/datastructures/groupmap.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sequenceparser.o source/datastructures/sequenceparser.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/reportfile.o source/datastructures/reportfile.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequenceparser.h:14, from source/datastructures/sequenceparser.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequenceparser.h:14, from source/datastructures/sequenceparser.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequenceparser.h:14, from source/datastructures/sequenceparser.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/reportfile.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/reportfile.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/reportfile.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/alignmentcell.o source/datastructures/alignmentcell.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sequencecountparser.o source/datastructures/sequencecountparser.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/datastructures/alignmentcell.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/datastructures/alignmentcell.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/datastructures/alignmentcell.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequencecountparser.h:12, from source/datastructures/sequencecountparser.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequencecountparser.h:12, from source/datastructures/sequencecountparser.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequencecountparser.h:12, from source/datastructures/sequencecountparser.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/fullmatrix.o source/datastructures/fullmatrix.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/blastalign.o source/datastructures/blastalign.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/datastructures/fullmatrix.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/datastructures/fullmatrix.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/fullmatrix.h:12, from source/datastructures/fullmatrix.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignment.hpp:16, from source/datastructures/blastalign.cpp:15: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignment.hpp:16, from source/datastructures/blastalign.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/alignment.hpp:16, from source/datastructures/blastalign.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/datastructures/blastalign.cpp: In member function ‘virtual void BlastAlignment::align(std::__cxx11::string, std::__cxx11::string)’: source/datastructures/blastalign.cpp:63:30: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(blastCommand.c_str()); // Here we assume that "bl2seq" is in the users path or in the same folder as ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/database.o source/datastructures/database.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/counttable.o source/datastructures/counttable.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/treemap.o source/datastructures/treemap.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/counttable.h:39, from source/datastructures/counttable.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/counttable.h:39, from source/datastructures/counttable.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/counttable.h:39, from source/datastructures/counttable.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treemap.h:12, from source/datastructures/treemap.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treemap.h:12, from source/datastructures/treemap.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/treemap.h:12, from source/datastructures/treemap.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/nameassignment.o source/datastructures/nameassignment.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/kmerdb.o source/datastructures/kmerdb.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/nameassignment.hpp:4, from source/datastructures/nameassignment.cpp:3: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/nameassignment.hpp:4, from source/datastructures/nameassignment.cpp:3: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/nameassignment.hpp:4, from source/datastructures/nameassignment.cpp:3: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/kmerdb.cpp:25: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/kmerdb.cpp:25: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/kmerdb.cpp:25: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/designmap.o source/datastructures/designmap.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sharedsabundvector.o source/datastructures/sharedsabundvector.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/suffixdb.o source/datastructures/suffixdb.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/designmap.h:12, from source/datastructures/designmap.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/designmap.h:12, from source/datastructures/designmap.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/designmap.h:12, from source/datastructures/designmap.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/sabundvector.o source/datastructures/sabundvector.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedsabundvector.h:14, from source/datastructures/sharedsabundvector.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedsabundvector.h:14, from source/datastructures/sharedsabundvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sharedsabundvector.h:14, from source/datastructures/sharedsabundvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.hpp:16, from source/datastructures/suffixdb.cpp:18: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.hpp:16, from source/datastructures/suffixdb.cpp:18: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/database.hpp:16, from source/datastructures/suffixdb.cpp:18: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/datastructures/sabundvector.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/datastructures/sabundvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/sabundvector.hpp:4, from source/datastructures/sabundvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/rabundvector.o source/datastructures/rabundvector.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/alignment.o source/datastructures/alignment.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/rabundvector.hpp:4, from source/datastructures/rabundvector.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/rabundvector.hpp:4, from source/datastructures/rabundvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/datavector.hpp:5, from source/datastructures/rabundvector.hpp:4, from source/datastructures/rabundvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/datastructures/suffixtree.o source/datastructures/suffixtree.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/datastructures/alignment.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/datastructures/alignment.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/datastructures/alignmentcell.hpp:15, from source/datastructures/alignment.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/metastats/mothurfisher.o source/metastats/mothurfisher.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/suffixtree.cpp:25: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/suffixtree.cpp:25: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/datastructures/sequence.hpp:20, from source/datastructures/suffixtree.cpp:25: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/metastats/mothurmetastats.o source/metastats/mothurmetastats.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/randomforest/regularizeddecisiontree.o source/randomforest/regularizeddecisiontree.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/randomforest/rftreenode.o source/randomforest/rftreenode.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/metastats/mothurfisher.h:14, from source/metastats/mothurfisher.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/metastats/mothurfisher.h:14, from source/metastats/mothurfisher.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/metastats/mothurfisher.h:14, from source/metastats/mothurfisher.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/metastats/mothurmetastats.h:14, from source/metastats/mothurmetastats.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/metastats/mothurmetastats.h:14, from source/metastats/mothurmetastats.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/metastats/mothurmetastats.h:14, from source/metastats/mothurmetastats.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/rftreenode.hpp:12, from source/randomforest/regularizeddecisiontree.h:13, from source/randomforest/regularizeddecisiontree.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/rftreenode.hpp:12, from source/randomforest/regularizeddecisiontree.h:13, from source/randomforest/regularizeddecisiontree.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/rftreenode.hpp:12, from source/randomforest/regularizeddecisiontree.h:13, from source/randomforest/regularizeddecisiontree.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/rftreenode.hpp:12, from source/randomforest/rftreenode.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/rftreenode.hpp:12, from source/randomforest/rftreenode.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/rftreenode.hpp:12, from source/randomforest/rftreenode.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/randomforest/abstractdecisiontree.o source/randomforest/abstractdecisiontree.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/randomforest/decisiontree.o source/randomforest/decisiontree.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/randomforest/randomforest.o source/randomforest/randomforest.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/abstractdecisiontree.hpp:12, from source/randomforest/abstractdecisiontree.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/abstractdecisiontree.hpp:12, from source/randomforest/abstractdecisiontree.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/abstractdecisiontree.hpp:12, from source/randomforest/abstractdecisiontree.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/macros.h:12, from source/randomforest/decisiontree.hpp:12, from source/randomforest/decisiontree.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/macros.h:12, from source/randomforest/decisiontree.hpp:12, from source/randomforest/decisiontree.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/macros.h:12, from source/randomforest/decisiontree.hpp:12, from source/randomforest/decisiontree.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/macros.h:12, from source/randomforest/randomforest.hpp:12, from source/randomforest/randomforest.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/macros.h:12, from source/randomforest/randomforest.hpp:12, from source/randomforest/randomforest.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/macros.h:12, from source/randomforest/randomforest.hpp:12, from source/randomforest/randomforest.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/randomforest/forest.o source/randomforest/forest.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/read/formatcolumn.o source/read/formatcolumn.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/forest.h:12, from source/randomforest/forest.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/forest.h:12, from source/randomforest/forest.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/randomforest/forest.h:12, from source/randomforest/forest.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/formatmatrix.h:13, from source/read/formatcolumn.h:12, from source/read/formatcolumn.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/formatmatrix.h:13, from source/read/formatcolumn.h:12, from source/read/formatcolumn.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/formatmatrix.h:13, from source/read/formatcolumn.h:12, from source/read/formatcolumn.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/read/splitmatrix.o source/read/splitmatrix.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/read/readphylipvector.o source/read/readphylipvector.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/read/readblast.o source/read/readblast.cpp source/read/formatcolumn.cpp: In member function ‘virtual int FormatColumnMatrix::read(NameAssignment*)’: source/read/formatcolumn.cpp:87:27: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ^ source/read/formatcolumn.cpp: In member function ‘virtual int FormatColumnMatrix::read(CountTable*)’: source/read/formatcolumn.cpp:250:32: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/splitmatrix.h:13, from source/read/splitmatrix.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/splitmatrix.h:13, from source/read/splitmatrix.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/splitmatrix.h:13, from source/read/splitmatrix.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readphylipvector.h:14, from source/read/readphylipvector.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readphylipvector.h:14, from source/read/readphylipvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readphylipvector.h:14, from source/read/readphylipvector.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readblast.h:12, from source/read/readblast.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readblast.h:12, from source/read/readblast.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readblast.h:12, from source/read/readblast.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/read/readcluster.o source/read/readcluster.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/read/readtree.o source/read/readtree.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readcluster.h:13, from source/read/readcluster.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readcluster.h:13, from source/read/readcluster.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readcluster.h:13, from source/read/readcluster.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/read/formatphylip.o source/read/formatphylip.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readtree.h:12, from source/read/readtree.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readtree.h:12, from source/read/readtree.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readtree.h:12, from source/read/readtree.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/formatmatrix.h:13, from source/read/formatphylip.h:13, from source/read/formatphylip.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/formatmatrix.h:13, from source/read/formatphylip.h:13, from source/read/formatphylip.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/formatmatrix.h:13, from source/read/formatphylip.h:13, from source/read/formatphylip.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ source/read/formatphylip.cpp: In member function ‘virtual int FormatPhylipMatrix::read(NameAssignment*)’: source/read/formatphylip.cpp:108:29: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ^ source/read/formatphylip.cpp: In member function ‘virtual int FormatPhylipMatrix::read(CountTable*)’: source/read/formatphylip.cpp:338:36: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/read/readcolumn.o source/read/readcolumn.cpp g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/read/treereader.o source/read/treereader.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readmatrix.hpp:13, from source/read/readcolumn.h:12, from source/read/readcolumn.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readmatrix.hpp:13, from source/read/readcolumn.h:12, from source/read/readcolumn.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readmatrix.hpp:13, from source/read/readcolumn.h:12, from source/read/readcolumn.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/read/readphylip.o source/read/readphylip.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/read/treereader.h:12, from source/read/treereader.cpp:9: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/read/treereader.h:12, from source/read/treereader.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/read/treereader.h:12, from source/read/treereader.cpp:9: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ g++ -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 -DRELEASE_DATE="\"7/20/2016\"" -DVERSION="\"1.38.0\"" -O3 -DUSE_READLINE -DUSE_BOOST -I "\"Enter_your_boost_include_path_here\"" -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/svm/svm.o source/svm/svm.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readmatrix.hpp:13, from source/read/readphylip.h:12, from source/read/readphylip.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readmatrix.hpp:13, from source/read/readphylip.h:12, from source/read/readphylip.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/read/readmatrix.hpp:13, from source/read/readphylip.h:12, from source/read/readphylip.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ cd source/uchime_src && ./mk && mv uchime ../../ && cd .. + CPPNames='addtargets2 alignchime alignchimel alnparams alpha alpha2 fractid getparents globalalign2 make3way mx myutils path searchchime seqdb setnucmx sfasta tracebackbit uchime_main usort viterbifast writechhit' + ObjNames='addtargets2.o alignchime.o alignchimel.o alnparams.o alpha.o alpha2.o fractid.o getparents.o globalalign2.o make3way.o mx.o myutils.o path.o searchchime.o seqdb.o setnucmx.o sfasta.o tracebackbit.o uchime_main.o usort.o viterbifast.o writechhit.o' + rm -f addtargets2.o alignchime.o alignchimel.o alnparams.o alpha.o alpha2.o fractid.o getparents.o globalalign2.o make3way.o mx.o myutils.o path.o searchchime.o seqdb.o setnucmx.o sfasta.o tracebackbit.o uchime_main.o usort.o viterbifast.o writechhit.o mk.stdout mk.stderr tmp.stderr + for CPPName in '$CPPNames' + echo addtargets2 addtargets2 + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 addtargets2.cpp -o addtargets2.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo alignchime alignchime + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 alignchime.cpp -o alignchime.o In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/svm/svm.hpp:23, from source/svm/svm.cpp:17: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/svm/svm.hpp:23, from source/svm/svm.cpp:17: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/filtering_stream.hpp:19, from source/mothur.h:21, from source/mothurout.h:13, from source/svm/svm.hpp:23, from source/svm/svm.cpp:17: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo alignchimel alignchimel + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 alignchimel.cpp -o alignchimel.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo alnparams alnparams + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 alnparams.cpp -o alnparams.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo alpha alpha + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 alpha.cpp -o alpha.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo alpha2 alpha2 + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 alpha2.cpp -o alpha2.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo fractid fractid + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 fractid.cpp -o fractid.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo getparents getparents + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 getparents.cpp -o getparents.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo globalalign2 globalalign2 + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 globalalign2.cpp -o globalalign2.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo make3way make3way + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 make3way.cpp -o make3way.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo mx mx + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 mx.cpp -o mx.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo myutils myutils + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 myutils.cpp -o myutils.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo path path + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 path.cpp -o path.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo searchchime searchchime + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 searchchime.cpp -o searchchime.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo seqdb seqdb + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 seqdb.cpp -o seqdb.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo setnucmx setnucmx + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 setnucmx.cpp -o setnucmx.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo sfasta sfasta + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 sfasta.cpp -o sfasta.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo tracebackbit tracebackbit + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 tracebackbit.cpp -o tracebackbit.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo uchime_main uchime_main + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 uchime_main.cpp -o uchime_main.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo usort usort + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 usort.cpp -o usort.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo viterbifast viterbifast + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 viterbifast.cpp -o viterbifast.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + for CPPName in '$CPPNames' + echo writechhit writechhit + g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«PKGBUILDDIR»=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 writechhit.cpp -o writechhit.o + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + LINK_OPTS= + g++ -g -o uchime addtargets2.o alignchime.o alignchimel.o alnparams.o alpha.o alpha2.o fractid.o getparents.o globalalign2.o make3way.o mx.o myutils.o path.o searchchime.o seqdb.o setnucmx.o sfasta.o tracebackbit.o uchime_main.o usort.o viterbifast.o writechhit.o -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L '"\"Enter_your_boost_library_path_here\""' -Lsource/ -Lsource/calculators/ -Lsource/chimera/ -Lsource/classifier/ -Lsource/clearcut/ -Lsource/commands/ -Lsource/communitytype/ -Lsource/datastructures/ -Lsource/metastats/ -Lsource/randomforest/ -Lsource/read/ -Lsource/svm/ + cat tmp.stderr + cat tmp.stderr + rm -f tmp.stderr + ls -lh uchime -rwxrwxr-x 1 buildd buildd 2.3M Sep 17 18:55 uchime + sum uchime 33929 2351 g++ -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -L "\"Enter_your_boost_library_path_here\"" -Lsource/ -Lsource/calculators/ -Lsource/chimera/ -Lsource/classifier/ -Lsource/clearcut/ -Lsource/commands/ -Lsource/communitytype/ -Lsource/datastructures/ -Lsource/metastats/ -Lsource/randomforest/ -Lsource/read/ -Lsource/svm/ -o mothur source/randomnumber.o source/consensus.o source/gotohoverlap.o source/sharedutilities.o source/validparameter.o source/rarefact.o source/heatmap.o source/nast.o source/averagelinkage.o source/mothurout.o source/completelinkage.o source/seqnoise.o source/venn.o source/inputdata.o source/calcsparcc.o source/clusterclassic.o source/vsearchfileparser.o source/slibshuff.o source/collect.o source/trialSwap2.o source/fileoutput.o source/cluster.o source/nastreport.o source/wilcox.o source/needlemanoverlap.o source/myseqdist.o source/refchimeratest.o source/subsample.o source/commandfactory.o source/rarecalc.o source/weightedlinkage.o source/progress.o source/linearalgebra.o source/singlelinkage.o source/trimoligos.o source/validcalculator.o source/optionparser.o source/engine.o source/mothur.o source/dlibshuff.o source/heatmapsim.o source/raredisplay.o source/commandoptionparser.o source/libshuff.o source/noalign.o source/overlap.o source/calculators/sharedthetayc.o source/calculators/sharedmorisitahorn.o source/calculators/sharedkulczynski.o source/calculators/qstat.o source/calculators/bergerparker.o source/calculators/sharedanderbergs.o source/calculators/smithwilson.o source/calculators/hamming.o source/calculators/sharedjabund.o source/calculators/shen.o source/calculators/sharedjclass.o source/calculators/canberra.o source/calculators/parsimony.o source/calculators/coverage.o source/calculators/simpson.o source/calculators/mempearson.o source/calculators/logsd.o source/calculators/goodscoverage.o source/calculators/memchord.o source/calculators/manhattan.o source/calculators/geom.o source/calculators/jackknife.o source/calculators/whittaker.o source/calculators/efron.o source/calculators/bootstrap.o source/calculators/sharedsobs.o source/calculators/sharedkstest.o source/calculators/memeuclidean.o source/calculators/invsimpson.o source/calculators/sharedsorclass.o source/calculators/ace.o source/calculators/prng.o source/calculators/shannonrange.o source/calculators/npshannon.o source/calculators/structeuclidean.o source/calculators/sharedchao1.o source/calculators/sharedjest.o source/calculators/chao1.o source/calculators/simpsoneven.o source/calculators/sharedsorabund.o source/calculators/shannon.o source/calculators/spearman.o source/calculators/structchord.o source/calculators/shannoneven.o source/calculators/sharedace.o source/calculators/bstick.o source/calculators/sharedjackknife.o source/calculators/solow.o source/calculators/sharedjsd.o source/calculators/sharedsobscollectsummary.o source/calculators/hellinger.o source/calculators/odum.o source/calculators/structpearson.o source/calculators/heip.o source/calculators/structchi2.o source/calculators/sharedlennon.o source/calculators/uvest.o source/calculators/memchi2.o source/calculators/sharedthetan.o source/calculators/unweighted.o source/calculators/boneh.o source/calculators/sharedsorest.o source/calculators/speciesprofile.o source/calculators/soergel.o source/calculators/sharedkulczynskicody.o source/calculators/sharedmarczewski.o source/calculators/structkulczynski.o source/calculators/sharedrjsd.o source/calculators/weighted.o source/calculators/sharedbraycurtis.o source/calculators/gower.o source/calculators/sharedochiai.o source/calculators/calculator.o source/chimera/pintail.o source/chimera/myPerseus.o source/chimera/bellerophon.o source/chimera/maligner.o source/chimera/chimeraslayer.o source/chimera/chimerarealigner.o source/chimera/slayer.o source/chimera/ccode.o source/chimera/chimeracheckrdp.o source/chimera/mothurchimera.o source/chimera/decalc.o source/classifier/classify.o source/classifier/phylosummary.o source/classifier/taxonomyequalizer.o source/classifier/kmernode.o source/classifier/phylotree.o source/classifier/aligntree.o source/classifier/kmertree.o source/classifier/knn.o source/classifier/alignnode.o source/classifier/bayesian.o source/classifier/taxonomynode.o source/clearcut/distclearcut.o source/clearcut/clearcut.o source/clearcut/fasta.o source/clearcut/dmat.o source/clearcut/getopt_long.o source/clearcut/cmdargs.o source/commands/getotuscommand.o source/commands/listseqscommand.o source/commands/clusterdoturcommand.o source/commands/getlistcountcommand.o source/commands/distancecommand.o source/commands/binsequencecommand.o source/commands/quitcommand.o source/commands/removegroupscommand.o source/commands/indicatorcommand.o source/commands/mgclustercommand.o source/commands/seqsummarycommand.o source/commands/clusterfragmentscommand.o source/commands/treegroupscommand.o source/commands/kruskalwalliscommand.o source/commands/getotulabelscommand.o source/commands/removeseqscommand.o source/commands/venncommand.o source/commands/renameseqscommand.o source/commands/makegroupcommand.o source/commands/deuniqueseqscommand.o source/commands/unifracunweightedcommand.o source/commands/makefilecommand.o source/commands/getgroupscommand.o source/commands/listotulabelscommand.o source/commands/sensspeccommand.o source/commands/summaryqualcommand.o source/commands/removerarecommand.o source/commands/unifracweightedcommand.o source/commands/getcoremicrobiomecommand.o source/commands/createdatabasecommand.o source/commands/splitgroupscommand.o source/commands/parselistscommand.o source/commands/normalizesharedcommand.o source/commands/heatmapsimcommand.o source/commands/clustercommand.o source/commands/degapseqscommand.o source/commands/summarytaxcommand.o source/commands/clustersplitcommand.o source/commands/systemcommand.o source/commands/rarefactsharedcommand.o source/commands/trimseqscommand.o source/commands/otuhierarchycommand.o source/commands/getrelabundcommand.o source/commands/removelineagecommand.o source/commands/chimeraccodecommand.o source/commands/chimerabellerophoncommand.o source/commands/getsharedotucommand.o source/commands/classifyseqscommand.o source/commands/countgroupscommand.o source/commands/rarefactcommand.o source/commands/removeotulabelscommand.o source/commands/screenseqscommand.o source/commands/parsimonycommand.o source/commands/sracommand.o source/commands/getdistscommand.o source/commands/homovacommand.o source/commands/sffmultiplecommand.o source/commands/splitabundcommand.o source/commands/primerdesigncommand.o source/commands/getrabundcommand.o source/commands/catchallcommand.o source/commands/deconvolutecommand.o source/commands/mantelcommand.o source/commands/matrixoutputcommand.o source/commands/mergetaxsummarycommand.o source/commands/makelookupcommand.o source/commands/getcurrentcommand.o source/commands/summarysharedcommand.o source/commands/getlineagecommand.o source/commands/nmdscommand.o source/commands/chimeravsearchcommand.o source/commands/getcommandinfocommand.o source/commands/collectsharedcommand.o source/commands/mimarksattributescommand.o source/commands/getsabundcommand.o source/commands/lefsecommand.o source/commands/removeotuscommand.o source/commands/phylodiversitycommand.o source/commands/filtersharedcommand.o source/commands/pcoacommand.o source/commands/filterseqscommand.o source/commands/mergesfffilecommand.o source/commands/secondarystructurecommand.o source/commands/shhhercommand.o source/commands/pcacommand.o source/commands/metastatscommand.o source/commands/subsamplecommand.o source/commands/chimeraslayercommand.o source/commands/chopseqscommand.o source/commands/makebiomcommand.o source/commands/aligncommand.o source/commands/seqerrorcommand.o source/commands/getlabelcommand.o source/commands/consensusseqscommand.o source/commands/sffinfocommand.o source/commands/corraxescommand.o source/commands/cooccurrencecommand.o source/commands/preclustercommand.o source/commands/setdircommand.o source/commands/makelefsecommand.o source/commands/getseqscommand.o source/commands/setcurrentcommand.o source/commands/getmetacommunitycommand.o source/commands/setseedcommand.o source/commands/sharedcommand.o source/commands/makecontigscommand.o source/commands/mergefilecommand.o source/commands/biominfocommand.o source/commands/classifyrfsharedcommand.o source/commands/helpcommand.o source/commands/pcrseqscommand.o source/commands/anosimcommand.o source/commands/chimeraperseuscommand.o source/commands/deuniquetreecommand.o source/commands/makefastqcommand.o source/commands/trimflowscommand.o source/commands/classifyotucommand.o source/commands/renamefilecommand.o source/commands/chimerapintailcommand.o source/commands/sortseqscommand.o source/commands/otuassociationcommand.o source/commands/removedistscommand.o source/commands/parsefastaqcommand.o source/commands/amovacommand.o source/commands/clearcutcommand.o source/commands/classifysvmsharedcommand.o source/commands/countseqscommand.o source/commands/chimerauchimecommand.o source/commands/libshuffcommand.o source/commands/nocommands.o source/commands/getgroupcommand.o source/commands/chimeracheckcommand.o source/commands/getmimarkspackagecommand.o source/commands/pairwiseseqscommand.o source/commands/mergegroupscommand.o source/commands/getoturepcommand.o source/commands/setlogfilecommand.o source/commands/sparcccommand.o source/commands/heatmapcommand.o source/commands/phylotypecommand.o source/commands/newcommandtemplate.o source/commands/shhhseqscommand.o source/commands/summarycommand.o source/commands/reversecommand.o source/commands/classifytreecommand.o source/commands/collectcommand.o source/communitytype/communitytype.o source/communitytype/pam.o source/communitytype/kmeans.o source/communitytype/qFinderDMM.o source/datastructures/kmer.o source/datastructures/sharedlistvector.o source/datastructures/sharedordervector.o source/datastructures/fastamap.o source/datastructures/distancedb.o source/datastructures/alignmentcell.o source/datastructures/nameassignment.o source/datastructures/fastqread.o source/datastructures/alignment.o source/datastructures/flowdata.o source/datastructures/tree.o source/datastructures/listvector.o source/datastructures/kmeralign.o source/datastructures/sequenceparser.o source/datastructures/sparsematrix.o source/datastructures/alignmentdb.o source/datastructures/fullmatrix.o source/datastructures/blastalign.o source/datastructures/treenode.o source/datastructures/suffixdb.o source/datastructures/sabundvector.o source/datastructures/rabundvector.o source/datastructures/suffixtree.o source/datastructures/blastdb.o source/datastructures/qualityscores.o source/datastructures/suffixnodes.o source/datastructures/groupmap.o source/datastructures/sparsedistancematrix.o source/datastructures/sequencecountparser.o source/datastructures/oligos.o source/datastructures/counttable.o source/datastructures/treemap.o source/datastructures/kmerdb.o source/datastructures/sharedrabundvector.o source/datastructures/sharedrabundfloatvector.o source/datastructures/ordervector.o source/datastructures/sequence.o source/datastructures/sequencedb.o source/datastructures/database.o source/datastructures/designmap.o source/datastructures/sharedsabundvector.o source/datastructures/reportfile.o source/metastats/mothurfisher.o source/metastats/mothurmetastats.o source/randomforest/regularizeddecisiontree.o source/randomforest/rftreenode.o source/randomforest/abstractdecisiontree.o source/randomforest/decisiontree.o source/randomforest/randomforest.o source/randomforest/forest.o source/read/formatcolumn.o source/read/splitmatrix.o source/read/readphylipvector.o source/read/readblast.o source/read/readcluster.o source/read/readtree.o source/read/formatphylip.o source/read/readcolumn.o source/read/treereader.o source/read/readphylip.o source/svm/svm.o -lreadline -lboost_iostreams -lz make[2]: Leaving directory '/«PKGBUILDDIR»' # cp mothur mothur-mpi # XXX: debug make[1]: Leaving directory '/«PKGBUILDDIR»' dh_auto_test -a -O--parallel fakeroot debian/rules binary-arch dh binary-arch --parallel dh_testroot -a -O--parallel dh_prep -a -O--parallel debian/rules override_dh_auto_install make[1]: Entering directory '/«PKGBUILDDIR»' true make[1]: Leaving directory '/«PKGBUILDDIR»' dh_install -a -O--parallel dh_installdocs -a -O--parallel dh_installchangelogs -a -O--parallel dh_installman -a -O--parallel dh_installmenu -a -O--parallel dh_perl -a -O--parallel dh_link -a -O--parallel dh_strip_nondeterminism -a -O--parallel dh_compress -a -O--parallel dh_fixperms -a -O--parallel dh_strip -a -O--parallel dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform armhf: mothur mothur-mpi dh_strip debug symbol extraction: packages to act on: mothur mothur-mpi dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs -a -O--parallel dh_shlibdeps -a -O--parallel dh_installdeb -a -O--parallel dh_gencontrol -a -O--parallel dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform armhf: mothur mothur-mpi dh_gencontrol debug symbol wrapper: packages to act on: mothur mothur-mpi dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package mothur (pkgdir debian/mothur, ddeb package dir debian/mothur-dbgsym) dh_gencontrol debug symbol wrapper: building mothur-dbgsym_1.38.0-1build2_armhf.ddeb dpkg-deb: building package 'mothur-dbgsym' in '../mothur-dbgsym_1.38.0-1build2_armhf.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile mothur-dbgsym_1.38.0-1build2_armhf.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: processing package mothur-mpi (pkgdir debian/mothur-mpi, ddeb package dir debian/mothur-mpi-dbgsym) dh_gencontrol debug symbol wrapper: building mothur-mpi-dbgsym_1.38.0-1build2_armhf.ddeb dpkg-deb: building package 'mothur-mpi-dbgsym' in '../mothur-mpi-dbgsym_1.38.0-1build2_armhf.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile mothur-mpi-dbgsym_1.38.0-1build2_armhf.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a -O--parallel dh_builddeb -a -O--parallel INFO: pkgstriptranslations version 130 INFO: pkgstriptranslations version 130 pkgstriptranslations: processing mothur-mpi (in debian/mothur-mpi); do_strip: , oemstrip: pkgstriptranslations: processing mothur (in debian/mothur); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/mothur/DEBIAN/control, package mothur, directory debian/mothur pkgstripfiles: Truncating usr/share/doc/mothur/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package mothur ... pkgstripfiles: No PNG files. dpkg-deb: building package 'mothur' in '../mothur_1.38.0-1build2_armhf.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/mothur-mpi/DEBIAN/control, package mothur-mpi, directory debian/mothur-mpi Searching for duplicated docs in dependency mothur... symlinking changelog.Debian.gz in mothur-mpi to file in mothur pkgstripfiles: Running PNG optimization (using 4 cpus) for package mothur-mpi ... pkgstripfiles: No PNG files. dpkg-deb: building package 'mothur-mpi' in '../mothur-mpi_1.38.0-1build2_armhf.deb'. dpkg-genchanges --build=any -mLaunchpad Build Daemon >../mothur_1.38.0-1build2_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build mothur-1.38.0 dpkg-buildpackage: info: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20160917-1903 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ mothur_1.38.0-1build2_armhf.changes: ──────────────────────────────────── Format: 1.8 Date: Sat, 17 Sep 2016 12:06:30 +0000 Source: mothur Binary: mothur mothur-mpi Architecture: armhf Version: 1.38.0-1build2 Distribution: yakkety-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: mothur - sequence analysis suite for research on microbiota mothur-mpi - mpi-enabled binary for mothur Changes: mothur (1.38.0-1build2) yakkety; urgency=medium . * No-change rebuild for readline soname change. Checksums-Sha1: 77c3902bd71e606d044f0f37c8c02a68575ead95 42135618 mothur-dbgsym_1.38.0-1build2_armhf.ddeb ffc054429b68499d98d0f786b20ade04364591ae 41621778 mothur-mpi-dbgsym_1.38.0-1build2_armhf.ddeb 1e10d082bf364f343715850f151182cfe4ccb54b 4141392 mothur-mpi_1.38.0-1build2_armhf.deb c16f4ec8c49859da6dc88541d8fed403e944361b 4216756 mothur_1.38.0-1build2_armhf.deb Checksums-Sha256: 3fa1c5d8153bcedd303746eb71b01d8c85ad3e4eada42abb8cb9f561f03a707c 42135618 mothur-dbgsym_1.38.0-1build2_armhf.ddeb d68d2f9b28ca265fb977d45daf1b0eb27a0dce33908d617ac70859f69a57654d 41621778 mothur-mpi-dbgsym_1.38.0-1build2_armhf.ddeb 9b640359b94b5789764324bf5209e4668b92746107f047b7dfd53bb87d7d8639 4141392 mothur-mpi_1.38.0-1build2_armhf.deb db13e44c5f47a25f1201cdb4575bb9066d2d069129d8d17371affc4695295a58 4216756 mothur_1.38.0-1build2_armhf.deb Files: 64970a377c69a2406b0d93eb873ab521 42135618 science extra mothur-dbgsym_1.38.0-1build2_armhf.ddeb ccc349a5049c5db67d9979ff9a899188 41621778 science extra mothur-mpi-dbgsym_1.38.0-1build2_armhf.ddeb ff1d11728e6917ff2ffa551fc9e71d91 4141392 science optional mothur-mpi_1.38.0-1build2_armhf.deb 8d036dab04f5baec3b9c1713381272a9 4216756 science optional mothur_1.38.0-1build2_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ mothur-mpi_1.38.0-1build2_armhf.deb ─────────────────────────────────── new debian package, version 2.0. size 4141392 bytes: control archive=880 bytes. 1058 bytes, 22 lines control 122 bytes, 2 lines md5sums Package: mothur-mpi Source: mothur Version: 1.38.0-1build2 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 9837 Depends: libboost-iostreams1.61.0, libc6 (>= 2.23), libgcc1 (>= 1:3.5), libreadline7 (>= 6.0), libstdc++6 (>= 5.2), mothur, openmpi-bin Section: science Priority: optional Homepage: http://www.mothur.org Description: mpi-enabled binary for mothur Mothur seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community. It has incorporated the functionality of dotur, sons, treeclimber, s-libshuff, unifrac, and much more. In addition to improving the flexibility of these algorithms, a number of other features including calculators and visualization tools were added. . Provides the MPI-enabled binary for Mothur This is recommended for operations like shhh.flows which will be very slow on a single processor. drwxr-xr-x root/root 0 2016-09-17 12:06 ./ drwxr-xr-x root/root 0 2016-09-17 12:06 ./usr/ drwxr-xr-x root/root 0 2016-09-17 12:06 ./usr/bin/ -rwxr-xr-x root/root 10054432 2016-09-17 12:06 ./usr/bin/mothur-mpi drwxr-xr-x root/root 0 2016-09-17 12:06 ./usr/share/ drwxr-xr-x root/root 0 2016-09-17 12:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-09-17 12:06 ./usr/share/doc/mothur-mpi/ lrwxrwxrwx root/root 0 2016-09-17 12:06 ./usr/share/doc/mothur-mpi/changelog.Debian.gz -> ../mothur/changelog.Debian.gz -rw-r--r-- root/root 4549 2016-07-29 23:13 ./usr/share/doc/mothur-mpi/copyright drwxr-xr-x root/root 0 2016-09-17 12:06 ./usr/share/man/ drwxr-xr-x root/root 0 2016-09-17 12:06 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2016-09-17 12:06 ./usr/share/man/man1/mothur-mpi.1.gz -> mothur.1.gz mothur_1.38.0-1build2_armhf.deb ─────────────────────────────── new debian package, version 2.0. size 4216756 bytes: control archive=1179 bytes. 928 bytes, 19 lines control 493 bytes, 8 lines md5sums 185 bytes, 7 lines * postinst #!/bin/sh 160 bytes, 5 lines * postrm #!/bin/sh Package: mothur Version: 1.38.0-1build2 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 10006 Depends: libboost-iostreams1.61.0, libc6 (>= 2.23), libgcc1 (>= 1:3.5), libreadline7 (>= 6.0), libstdc++6 (>= 5.2) Conflicts: uchime Provides: uchime Section: science Priority: optional Homepage: http://www.mothur.org Description: sequence analysis suite for research on microbiota Mothur seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community. It has incorporated the functionality of dotur, sons, treeclimber, s-libshuff, unifrac, and much more. In addition to improving the flexibility of these algorithms, a number of other features including calculators and visualization tools were added. drwxr-xr-x root/root 0 2016-09-17 12:06 ./ drwxr-xr-x root/root 0 2016-09-17 12:06 ./usr/ drwxr-xr-x root/root 0 2016-09-17 12:06 ./usr/bin/ -rwxr-xr-x root/root 10054432 2016-09-17 12:06 ./usr/bin/mothur -rwxr-xr-x root/root 163288 2016-09-17 12:06 ./usr/bin/uchime drwxr-xr-x root/root 0 2016-09-17 12:06 ./usr/share/ drwxr-xr-x root/root 0 2016-09-17 12:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-09-17 12:06 ./usr/share/doc/mothur/ -rw-r--r-- root/root 259 2016-07-29 23:13 ./usr/share/doc/mothur/README.Debian -rw-r--r-- root/root 894 2016-09-17 12:06 ./usr/share/doc/mothur/changelog.Debian.gz -rw-r--r-- root/root 4549 2016-07-29 23:13 ./usr/share/doc/mothur/copyright drwxr-xr-x root/root 0 2016-09-17 12:06 ./usr/share/man/ drwxr-xr-x root/root 0 2016-09-17 12:06 ./usr/share/man/man1/ -rw-r--r-- root/root 566 2016-09-17 12:06 ./usr/share/man/man1/mothur.1.gz -rw-r--r-- root/root 3395 2016-09-17 12:06 ./usr/share/man/man1/uchime.1.gz drwxr-xr-x root/root 0 2016-09-17 12:06 ./usr/share/menu/ -rw-r--r-- root/root 176 2016-07-29 23:13 ./usr/share/menu/mothur ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: armhf Build-Space: 1040480 Build-Time: 3304 Distribution: yakkety-proposed Host Architecture: armhf Install-Time: 37 Job: mothur_1.38.0-1build2.dsc Machine Architecture: arm64 Package: mothur Package-Time: 3343 Source-Version: 1.38.0-1build2 Space: 1040480 Status: successful Version: 1.38.0-1build2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20160917-1903 Build needed 00:55:43, 1040480k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-10920990'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-10920990/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-10920990'] Unmounting chroot for build PACKAGEBUILD-10920990... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-10920990'] Removing build PACKAGEBUILD-10920990