RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '630936-1595355', '/home/buildd/filecache-default/635be72d6fb9bfb42b4c92267b98d880de50c1c5'] Synching the system clock with the buildd NTP service... 7 Jun 11:50:35 ntpdate[5513]: adjust time server 10.211.37.1 offset -0.005524 sec Unpacking chroot for build 630936-1595355 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '630936-1595355'] Mounting chroot for build 630936-1595355 RUN: /usr/share/launchpad-buildd/slavebin/apply-ogre-model ['apply-ogre-model', '630936-1595355', 'universe'] Attempting OGRE for universe in build-630936-1595355 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '630936-1595355', 'deb http://ftpmaster.internal/ubuntu intrepid main restricted universe'] Overriding sources.list in build-630936-1595355 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '630936-1595355'] Updating debian chroot for build 630936-1595355 Get:1 http://ftpmaster.internal intrepid Release.gpg [191B] Get:2 http://ftpmaster.internal intrepid Release [65.9kB] Get:3 http://ftpmaster.internal intrepid/main Packages [1215kB] Get:4 http://ftpmaster.internal intrepid/restricted Packages [6995B] Get:5 http://ftpmaster.internal intrepid/universe Packages [4561kB] Fetched 5849kB in 6s (860kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: initscripts libpam-foreground lsb-base make startup-tasks system-services sysv-rc sysvinit-utils sysvutils upstart upstart-compat-sysv 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/663kB of archives. After this operation, 86.0kB of additional disk space will be used. (Reading database ... 10541 files and directories currently installed.) Preparing to replace sysvinit-utils 2.86.ds1-56ubuntu2 (using .../sysvinit-utils_2.86.ds1-56ubuntu3_i386.deb) ... Unpacking replacement sysvinit-utils ... Setting up sysvinit-utils (2.86.ds1-56ubuntu3) ... (Reading database ... 10541 files and directories currently installed.) Preparing to replace sysv-rc 2.86.ds1-56ubuntu2 (using .../sysv-rc_2.86.ds1-56ubuntu3_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace lsb-base 3.2-4ubuntu1 (using .../lsb-base_3.2-12ubuntu1_all.deb) ... Unpacking replacement lsb-base ... Setting up lsb-base (3.2-12ubuntu1) ... (Reading database ... 10541 files and directories currently installed.) Preparing to replace initscripts 2.86.ds1-56ubuntu2 (using .../initscripts_2.86.ds1-56ubuntu3_i386.deb) ... Unpacking replacement initscripts ... Preparing to replace upstart-compat-sysv 0.3.9-2 (using .../upstart-compat-sysv_0.3.9-6_i386.deb) ... Unpacking replacement upstart-compat-sysv ... Preparing to replace upstart 0.3.9-2 (using .../upstart_0.3.9-6_i386.deb) ... Unpacking replacement upstart ... Preparing to replace startup-tasks 0.3.9-2 (using .../startup-tasks_0.3.9-6_i386.deb) ... Unpacking replacement startup-tasks ... Preparing to replace system-services 0.3.9-2 (using .../system-services_0.3.9-6_i386.deb) ... Unpacking replacement system-services ... Preparing to replace sysvutils 2.86.ds1-56ubuntu2 (using .../sysvutils_2.86.ds1-56ubuntu3_all.deb) ... Unpacking replacement sysvutils ... Preparing to replace libpam-foreground 0.4-1 (using .../libpam-foreground_0.5_i386.deb) ... Unpacking replacement libpam-foreground ... Preparing to replace make 3.81-4 (using .../archives/make_3.81-5_i386.deb) ... Unpacking replacement make ... Setting up sysv-rc (2.86.ds1-56ubuntu3) ... Setting up initscripts (2.86.ds1-56ubuntu3) ... Setting up upstart (0.3.9-6) ... Setting up upstart-compat-sysv (0.3.9-6) ... Setting up startup-tasks (0.3.9-6) ... Setting up system-services (0.3.9-6) ... Setting up sysvutils (2.86.ds1-56ubuntu3) ... Setting up libpam-foreground (0.5) ... Setting up make (3.81-5) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '630936-1595355', '--nolog', '--batch', '--archive=ubuntu', '-A', '--purpose=PRIMARY', '--dist=intrepid', '--comp=universe', 'mrbayes_3.1.2-0ubuntu2.dsc'] Initiating build Automatic build of mrbayes_3.1.2-0ubuntu2 on rothera by sbuild/i386 1.170.5 Build started at 20080607-1151 ****************************************************************************** mrbayes_3.1.2-0ubuntu2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: libncurses5-dev, libreadline5-dev, quilt Checking for already installed source dependencies... libncurses5-dev: missing libreadline5-dev: missing quilt: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install libncurses5-dev libreadline5-dev quilt Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: diffstat gettext gettext-base libreadline5 readline-common Suggested packages: cvs gettext-doc procmail graphviz Recommended packages: curl wget lynx The following NEW packages will be installed: diffstat gettext gettext-base libncurses5-dev libreadline5 libreadline5-dev quilt readline-common dpkg-preconfigure: unable to re-open stdin: 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/4259kB of archives. After this operation, 17.2MB of additional disk space will be used. Selecting previously deselected package gettext-base. (Reading database ... 10543 files and directories currently installed.) Unpacking gettext-base (from .../gettext-base_0.17-2ubuntu1_i386.deb) ... Selecting previously deselected package readline-common. Unpacking readline-common (from .../readline-common_5.2-3build1_all.deb) ... Selecting previously deselected package libreadline5. Unpacking libreadline5 (from .../libreadline5_5.2-3build1_i386.deb) ... Selecting previously deselected package diffstat. Unpacking diffstat (from .../diffstat_1.45-2_i386.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.17-2ubuntu1_i386.deb) ... Selecting previously deselected package libncurses5-dev. Unpacking libncurses5-dev (from .../libncurses5-dev_5.6+20071124-1ubuntu2_i386.deb) ... Selecting previously deselected package libreadline5-dev. Unpacking libreadline5-dev (from .../libreadline5-dev_5.2-3build1_i386.deb) ... Selecting previously deselected package quilt. Unpacking quilt (from .../quilt_0.46-4.1_all.deb) ... Setting up gettext-base (0.17-2ubuntu1) ... Setting up readline-common (5.2-3build1) ... Setting up libreadline5 (5.2-3build1) ... Setting up diffstat (1.45-2) ... Setting up gettext (0.17-2ubuntu1) ... Setting up libncurses5-dev (5.6+20071124-1ubuntu2) ... Setting up libreadline5-dev (5.2-3build1) ... Setting up quilt (0.46-4.1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.8~20080505-0ubuntu3 make_3.81-5 dpkg-dev_1.14.19ubuntu1 gcc-4.3_4.3.0-5ubuntu1 g++-4.3_4.3.0-5ubuntu1 binutils_2.18.50.20080530-0ubuntu1 libstdc++6_4.3.0-5ubuntu1 libstdc++6-4.3-dev_4.3.0-5ubuntu1 ------------------------------------------------------------------------------ sh: gcc: not found dpkg-source: warning: Couldn't determine gcc system type, falling back to default (native compilation) gpg: Signature made Fri Jun 6 19:15:48 2008 BST using DSA key ID 86BC2A50 gpg: Can't check signature: public key not found dpkg-source: extracting mrbayes in mrbayes-3.1.2 dpkg-source: unpacking mrbayes_3.1.2.orig.tar.gz dpkg-source: applying /home/buildd/build-630936-1595355/mrbayes_3.1.2-0ubuntu2.diff.gz dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: source package mrbayes dpkg-buildpackage: source version 3.1.2-0ubuntu2 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean test -f mb.c -a -f debian/rules /usr/bin/make -i clean make[1]: Entering directory `/build/buildd/mrbayes-3.1.2' rm -f *.o make[1]: Leaving directory `/build/buildd/mrbayes-3.1.2' ln -sf debian/patches quilt pop -a || test $? = 2 No patch removed rm -f build rm -rf *~ .pc debian/tmp debian/*~ debian/files* debian/substvars patches debian/rules build test -f mb.c -a -f debian/rules ln -sf debian/patches quilt push -a || test $? = 2 Applying patch misc/makefile_clean_binary.diff patching file Makefile Applying patch misc/man1.diff patching file doc/man/man1/mb.1 Now at patch misc/man1.diff /usr/bin/make make[1]: Entering directory `/build/buildd/mrbayes-3.1.2' gcc -g -O2 -DUNIX_VERSION -DUSE_READLINE -O3 -Wall -c -o mb.o mb.c gcc -g -O2 -DUNIX_VERSION -DUSE_READLINE -O3 -Wall -c -o mcmc.o mcmc.c gcc -g -O2 -DUNIX_VERSION -DUSE_READLINE -O3 -Wall -c -o bayes.o bayes.c gcc -g -O2 -DUNIX_VERSION -DUSE_READLINE -O3 -Wall -c -o command.o command.c command.c: In function 'GetToken': command.c:7813: warning: value computed is not used gcc -g -O2 -DUNIX_VERSION -DUSE_READLINE -O3 -Wall -c -o mbmath.o mbmath.c gcc -g -O2 -DUNIX_VERSION -DUSE_READLINE -O3 -Wall -c -o model.o model.c gcc -g -O2 -DUNIX_VERSION -DUSE_READLINE -O3 -Wall -c -o plot.o plot.c gcc -g -O2 -DUNIX_VERSION -DUSE_READLINE -O3 -Wall -c -o sump.o sump.c gcc -g -O2 -DUNIX_VERSION -DUSE_READLINE -O3 -Wall -c -o sumt.o sumt.c gcc -g -O2 -DUNIX_VERSION -DUSE_READLINE -O3 -Wall mb.o bayes.o command.o mbmath.o mcmc.o model.o plot.o sump.o sumt.o -lncurses -lreadline -lm -o mb make[1]: Leaving directory `/build/buildd/mrbayes-3.1.2' touch build /usr/bin/fakeroot debian/rules binary test -f mb.c -a -f debian/rules test $(id -u) = 0 test -f mb.c -a -f debian/rules test -f mb.c -a -f debian/rules rm -rf debian/tmp install -d debian/tmp/DEBIAN debian/tmp/usr/share/doc/mrbayes debian/tmp/usr/share/man debian/tmp/usr/bin install -s -m 755 mb debian/tmp/usr/bin cp -a debian/copyright debian/tmp/usr/share/doc/mrbayes cp -a debian/changelog debian/tmp/usr/share/doc/mrbayes/changelog.Debian cp -a doc/man/man1 debian/tmp/usr/share/man cd debian/tmp/usr/share/doc/mrbayes && gzip -9 changelog.Debian dpkg-shlibdeps debian/tmp/usr/bin/mb dpkg-shlibdeps: warning: dependency on libncurses.so.5 could be avoided if "debian/tmp/usr/bin/mb" were not uselessly linked against it (they use none of its symbols). dpkg-gencontrol -isp gzip -r9 debian/tmp/usr/share/man chown -R root:root debian/tmp chmod -R u+w,go=rX debian/tmp chmod u=rwx,go=rx debian/tmp/usr/bin/mb dpkg --build debian/tmp .. pkgstriptranslations: processing control file: ./debian/tmp/DEBIAN/control, package mrbayes, directory ./debian/tmp pkgstriptranslations: mrbayes does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com warning, `debian/tmp/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `mrbayes' in `../mrbayes_3.1.2-0ubuntu2_i386.deb'. dpkg-genchanges -b -mUbuntu/i386 Build Daemon >../mrbayes_3.1.2-0ubuntu2_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20080607-1152 chroot-autobuild/build/buildd/mrbayes_3.1.2-0ubuntu2_i386.deb: new debian package, version 2.0. size 428836 bytes: control archive= 678 bytes. 921 bytes, 18 lines control Package: mrbayes Version: 3.1.2-0ubuntu2 Architecture: i386 Maintainer: Ubuntu MOTU Developers Installed-Size: 1096 Depends: libc6 (>= 2.4), libncurses5 (>= 5.6+20071006-3), libreadline5 (>= 5.2), bash (>= 3.1) Section: math Priority: optional Description: A program for the Bayesian estimation of phylogeny Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. Homepage: http://mrbayes.csit.fsu.edu/ Original-Maintainer: Fernando Ribeiro chroot-autobuild/build/buildd/mrbayes_3.1.2-0ubuntu2_i386.deb: drwxr-xr-x root/root 0 2008-06-07 11:52 ./ drwxr-xr-x root/root 0 2008-06-07 11:52 ./usr/ drwxr-xr-x root/root 0 2008-06-07 11:52 ./usr/share/ drwxr-xr-x root/root 0 2008-06-07 11:52 ./usr/share/doc/ drwxr-xr-x root/root 0 2008-06-07 11:52 ./usr/share/doc/mrbayes/ -rw-r--r-- root/root 902 2008-06-07 11:51 ./usr/share/doc/mrbayes/copyright -rw-r--r-- root/root 327 2008-06-07 11:51 ./usr/share/doc/mrbayes/changelog.Debian.gz drwxr-xr-x root/root 0 2008-06-07 11:52 ./usr/share/man/ drwxr-xr-x root/root 0 2008-06-07 11:52 ./usr/share/man/man1/ -rw-r--r-- root/root 210 2008-06-07 11:51 ./usr/share/man/man1/mb.1.gz drwxr-xr-x root/root 0 2008-06-07 11:52 ./usr/bin/ -rwxr-xr-x root/root 1065548 2008-06-07 11:52 ./usr/bin/mb mrbayes_3.1.2-0ubuntu2_i386.changes: Format: 1.8 Date: Fri, 06 Jun 2008 20:15:18 +0200 Source: mrbayes Binary: mrbayes Architecture: i386 Version: 3.1.2-0ubuntu2 Distribution: intrepid Urgency: low Maintainer: Ubuntu/i386 Build Daemon Changed-By: Luca Falavigna Description: mrbayes - A program for the Bayesian estimation of phylogeny Launchpad-Bugs-Fixed: 230350 Changes: mrbayes (3.1.2-0ubuntu2) intrepid; urgency=low . * debian/control: - Update Maintainer field as per spec (LP: #230350). Checksums-Sha1: c3a2280546cebd665d5942b0cbef9ba2987b1a67 428836 mrbayes_3.1.2-0ubuntu2_i386.deb Checksums-Sha256: 50d0af9a2a4caef68ec8cefd79ebd11e452cf619263ba71ee4040f3241f50752 428836 mrbayes_3.1.2-0ubuntu2_i386.deb Files: 1d6962b4281457dd350a8a9ec396582e 428836 math optional mrbayes_3.1.2-0ubuntu2_i386.deb Original-Maintainer: Fernando Ribeiro ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/mrbayes-3.1.2 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --root=/home/buildd/build-630936-1595355/chroot-autobuild --purge libncurses5-dev quilt readline-common libreadline5 gettext libreadline5-dev diffstat gettext-base (Reading database ... 11925 files and directories currently installed.) Removing quilt ... Purging configuration files for quilt ... Removing gettext ... Removing libreadline5-dev ... Removing diffstat ... Removing gettext-base ... Removing libncurses5-dev ... Removing libreadline5 ... Purging configuration files for libreadline5 ... Removing readline-common ... Purging configuration files for readline-common ... Processing triggers for libc6 ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20080607-1152 Build needed 00:01:11, 9140k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '630936-1595355'] Scanning for processes to kill in build 630936-1595355... Scanning for processes to kill in build /home/buildd/build-630936-1595355/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '630936-1595355'] Unmounting chroot for build 630936-1595355... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '630936-1595355'] Removing build 630936-1595355