RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '780840-1837653', '/home/buildd/filecache-default/05ed72be0d6b3618e2e22266fc9a300b75f69100'] Synching the system clock with the buildd NTP service... 29 Nov 05:55:33 ntpdate[7806]: adjust time server 10.211.37.1 offset -0.001846 sec Unpacking chroot for build 780840-1837653 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '780840-1837653'] Mounting chroot for build 780840-1837653 RUN: /usr/share/launchpad-buildd/slavebin/apply-ogre-model ['apply-ogre-model', '780840-1837653', 'universe'] Attempting OGRE for universe in build-780840-1837653 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '780840-1837653', 'deb http://ftpmaster.internal/ubuntu jaunty main universe'] Overriding sources.list in build-780840-1837653 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '780840-1837653'] Updating debian chroot for build 780840-1837653 Get:1 http://ftpmaster.internal jaunty Release.gpg [189B] Get:2 http://ftpmaster.internal jaunty Release [74.6kB] Ign http://ftpmaster.internal jaunty/main Packages/DiffIndex Get:3 http://ftpmaster.internal jaunty/universe Packages [2960kB] Get:4 http://ftpmaster.internal jaunty/main Packages [1185kB] Fetched 4220kB in 10s (395kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: debianutils linux-libc-dev 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/722kB of archives. After this operation, 73.7kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! debianutils linux-libc-dev Authentication warning overridden. (Reading database ... 9539 files and directories currently installed.) Preparing to replace debianutils 2.30ubuntu1 (using .../debianutils_2.30ubuntu2_armel.deb) ... Unpacking replacement debianutils ... Setting up debianutils (2.30ubuntu2) ... (Reading database ... 9539 files and directories currently installed.) Preparing to replace linux-libc-dev 2.6.27-9.18 (using .../linux-libc-dev_2.6.28-1.1_armel.deb) ... Unpacking replacement linux-libc-dev ... Setting up linux-libc-dev (2.6.28-1.1) ... removed: nologin@ modified: mtab RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '780840-1837653', '--nolog', '--batch', '--archive=ubuntu', '--purpose=PRIMARY', '--dist=jaunty', '--comp=universe', 'mrbayes_3.1.2-0ubuntu2.dsc'] Initiating build Automatic build of mrbayes_3.1.2-0ubuntu2 on kahikatea by sbuild/armel 1.170.5 Build started at 20081129-0556 ****************************************************************************** mrbayes_3.1.2-0ubuntu2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: libncurses5-dev, libreadline5-dev, quilt Checking for already installed source dependencies... libncurses5-dev: missing libreadline5-dev: missing quilt: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install libncurses5-dev libreadline5-dev quilt Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: curl diffstat gettext gettext-base libcurl3 Suggested packages: cvs gettext-doc procmail graphviz The following NEW packages will be installed: curl diffstat gettext gettext-base libcurl3 libncurses5-dev libreadline5-dev quilt 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/4561kB of archives. After this operation, 17.6MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! gettext-base libcurl3 curl diffstat gettext libncurses5-dev libreadline5-dev quilt dpkg-preconfigure: unable to re-open stdin: Authentication warning overridden. Selecting previously deselected package gettext-base. (Reading database ... 9550 files and directories currently installed.) Unpacking gettext-base (from .../gettext-base_0.17-4ubuntu1_armel.deb) ... Selecting previously deselected package libcurl3. Unpacking libcurl3 (from .../libcurl3_7.18.2-7ubuntu2_armel.deb) ... Selecting previously deselected package curl. Unpacking curl (from .../curl_7.18.2-7ubuntu2_armel.deb) ... Selecting previously deselected package diffstat. Unpacking diffstat (from .../diffstat_1.46-1_armel.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.17-4ubuntu1_armel.deb) ... Selecting previously deselected package libncurses5-dev. Unpacking libncurses5-dev (from .../libncurses5-dev_5.7-2ubuntu1_armel.deb) ... Selecting previously deselected package libreadline5-dev. Unpacking libreadline5-dev (from .../libreadline5-dev_5.2-3build1_armel.deb) ... Selecting previously deselected package quilt. Unpacking quilt (from .../archives/quilt_0.46-6_all.deb) ... Setting up gettext-base (0.17-4ubuntu1) ... Setting up libcurl3 (7.18.2-7ubuntu2) ... Setting up curl (7.18.2-7ubuntu2) ... Setting up diffstat (1.46-1) ... Setting up gettext (0.17-4ubuntu1) ... Setting up libncurses5-dev (5.7-2ubuntu1) ... Setting up libreadline5-dev (5.2-3build1) ... Setting up quilt (0.46-6) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place removed: nologin@ modified: mtab Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.8+20081027-0ubuntu10 make_3.81-5 dpkg-dev_1.14.22ubuntu1 g++-4.3_4.3.2-2ubuntu4 gcc-4.3_4.3.2-2ubuntu4 binutils_2.19-0ubuntu2 libstdc++6_4.3.2-2ubuntu4 libstdc++6-4.3-dev_4.3.2-2ubuntu4 ------------------------------------------------------------------------------ sh: gcc: command not found dpkg-source: warning: Couldn't determine gcc system type, falling back to default (native compilation) gpg: Signature made Fri Jun 6 19:15:48 2008 BST using DSA key ID 86BC2A50 gpg: Can't check signature: public key not found dpkg-source: extracting mrbayes in mrbayes-3.1.2 dpkg-source: info: unpacking mrbayes_3.1.2.orig.tar.gz dpkg-source: info: applying mrbayes_3.1.2-0ubuntu2.diff.gz dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: source package mrbayes dpkg-buildpackage: source version 3.1.2-0ubuntu2 dpkg-buildpackage: host architecture armel /usr/bin/fakeroot debian/rules clean test -f mb.c -a -f debian/rules /usr/bin/make -i clean make[1]: Entering directory `/build/buildd/mrbayes-3.1.2' rm -f *.o make[1]: Leaving directory `/build/buildd/mrbayes-3.1.2' ln -sf debian/patches quilt pop -a || test $? = 2 No patch removed rm -f build rm -rf *~ .pc debian/tmp debian/*~ debian/files* debian/substvars patches debian/rules build test -f mb.c -a -f debian/rules ln -sf debian/patches quilt push -a || test $? = 2 Applying patch misc/makefile_clean_binary.diff patching file Makefile Applying patch misc/man1.diff patching file doc/man/man1/mb.1 Now at patch misc/man1.diff /usr/bin/make make[1]: Entering directory `/build/buildd/mrbayes-3.1.2' gcc -g -O2 -DUNIX_VERSION -DUSE_READLINE -O3 -Wall -c -o mb.o mb.c gcc -g -O2 -DUNIX_VERSION -DUSE_READLINE -O3 -Wall -c -o mcmc.o mcmc.c mcmc.c: In function 'ExtendChainQuery': mcmc.c:8643: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result gcc -g -O2 -DUNIX_VERSION -DUSE_READLINE -O3 -Wall -c -o bayes.o bayes.c bayes.c: In function 'DoQuit': bayes.c:787: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result gcc -g -O2 -DUNIX_VERSION -DUSE_READLINE -O3 -Wall -c -o command.o command.c command.c: In function 'DoCharStat': command.c:1844: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result command.c: In function 'DoProps': command.c:5809: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result command.c:5850: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result command.c:5867: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result command.c: In function 'GetToken': command.c:7813: warning: value computed is not used gcc -g -O2 -DUNIX_VERSION -DUSE_READLINE -O3 -Wall -c -o mbmath.o mbmath.c gcc -g -O2 -DUNIX_VERSION -DUSE_READLINE -O3 -Wall -c -o model.o model.c gcc -g -O2 -DUNIX_VERSION -DUSE_READLINE -O3 -Wall -c -o plot.o plot.c plot.c: In function 'DoPlot': plot.c:244: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result plot.c:333: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result gcc -g -O2 -DUNIX_VERSION -DUSE_READLINE -O3 -Wall -c -o sump.o sump.c gcc -g -O2 -DUNIX_VERSION -DUSE_READLINE -O3 -Wall -c -o sumt.o sumt.c sumt.c: In function 'BrlensVals': sumt.c:756: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result sumt.c:786: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result sumt.c: In function 'DoCompareTree': sumt.c:1925: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result sumt.c:1959: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result sumt.c:2205: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result sumt.c:2235: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result sumt.c: In function 'DoSumt': sumt.c:3223: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result sumt.c:3263: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result gcc -g -O2 -DUNIX_VERSION -DUSE_READLINE -O3 -Wall mb.o bayes.o command.o mbmath.o mcmc.o model.o plot.o sump.o sumt.o -lncurses -lreadline -lm -o mb make[1]: Leaving directory `/build/buildd/mrbayes-3.1.2' touch build /usr/bin/fakeroot debian/rules binary-arch test -f mb.c -a -f debian/rules test $(id -u) = 0 test -f mb.c -a -f debian/rules rm -rf debian/tmp install -d debian/tmp/DEBIAN debian/tmp/usr/share/doc/mrbayes debian/tmp/usr/share/man debian/tmp/usr/bin install -s -m 755 mb debian/tmp/usr/bin cp -a debian/copyright debian/tmp/usr/share/doc/mrbayes cp -a debian/changelog debian/tmp/usr/share/doc/mrbayes/changelog.Debian cp -a doc/man/man1 debian/tmp/usr/share/man cd debian/tmp/usr/share/doc/mrbayes && gzip -9 changelog.Debian dpkg-shlibdeps debian/tmp/usr/bin/mb dpkg-shlibdeps: warning: dependency on libncurses.so.5 could be avoided if "debian/tmp/usr/bin/mb" were not uselessly linked against it (they use none of its symbols). dpkg-gencontrol -isp gzip -r9 debian/tmp/usr/share/man chown -R root:root debian/tmp chmod -R u+w,go=rX debian/tmp chmod u=rwx,go=rx debian/tmp/usr/bin/mb dpkg --build debian/tmp .. pkgstriptranslations: processing control file: ./debian/tmp/DEBIAN/control, package mrbayes, directory ./debian/tmp pkgstriptranslations: mrbayes does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com warning, `debian/tmp/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `mrbayes' in `../mrbayes_3.1.2-0ubuntu2_armel.deb'. dpkg-genchanges -B -mUbuntu/armel Build Daemon >../mrbayes_3.1.2-0ubuntu2_armel.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20081129-0603 chroot-autobuild/build/buildd/mrbayes_3.1.2-0ubuntu2_armel.deb: new debian package, version 2.0. size 537966 bytes: control archive= 676 bytes. 922 bytes, 18 lines control Package: mrbayes Version: 3.1.2-0ubuntu2 Architecture: armel Maintainer: Ubuntu MOTU Developers Installed-Size: 1240 Depends: libc6 (>= 2.4), libncurses5 (>= 5.6+20071006-3), libreadline5 (>= 5.2), bash (>= 3.1) Section: math Priority: optional Description: A program for the Bayesian estimation of phylogeny Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. Homepage: http://mrbayes.csit.fsu.edu/ Original-Maintainer: Fernando Ribeiro chroot-autobuild/build/buildd/mrbayes_3.1.2-0ubuntu2_armel.deb: drwxr-xr-x root/root 0 2008-11-29 06:03 ./ drwxr-xr-x root/root 0 2008-11-29 06:03 ./usr/ drwxr-xr-x root/root 0 2008-11-29 06:03 ./usr/bin/ -rwxr-xr-x root/root 1213064 2008-11-29 06:03 ./usr/bin/mb drwxr-xr-x root/root 0 2008-11-29 06:03 ./usr/share/ drwxr-xr-x root/root 0 2008-11-29 06:03 ./usr/share/man/ drwxr-xr-x root/root 0 2008-11-29 06:03 ./usr/share/man/man1/ -rw-r--r-- root/root 210 2008-11-29 05:56 ./usr/share/man/man1/mb.1.gz drwxr-xr-x root/root 0 2008-11-29 06:03 ./usr/share/doc/ drwxr-xr-x root/root 0 2008-11-29 06:03 ./usr/share/doc/mrbayes/ -rw-r--r-- root/root 327 2008-11-29 05:56 ./usr/share/doc/mrbayes/changelog.Debian.gz -rw-r--r-- root/root 902 2008-11-29 05:56 ./usr/share/doc/mrbayes/copyright mrbayes_3.1.2-0ubuntu2_armel.changes: Format: 1.8 Date: Fri, 06 Jun 2008 20:15:18 +0200 Source: mrbayes Binary: mrbayes Architecture: armel Version: 3.1.2-0ubuntu2 Distribution: jaunty Urgency: low Maintainer: Ubuntu/armel Build Daemon Changed-By: Luca Falavigna Description: mrbayes - A program for the Bayesian estimation of phylogeny Launchpad-Bugs-Fixed: 230350 Changes: mrbayes (3.1.2-0ubuntu2) intrepid; urgency=low . * debian/control: - Update Maintainer field as per spec (LP: #230350). Checksums-Sha1: 86bce58bb7a259462c84232f728698baf410701f 537966 mrbayes_3.1.2-0ubuntu2_armel.deb Checksums-Sha256: 776a5ea892e8b3ad761e5c62dd1646c68c1e0a78bdcbeb60a8e1bcf4e798ddf5 537966 mrbayes_3.1.2-0ubuntu2_armel.deb Files: 6306c2889f1b0281705be1514c18b666 537966 math optional mrbayes_3.1.2-0ubuntu2_armel.deb Original-Maintainer: Fernando Ribeiro ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/mrbayes-3.1.2 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --root=/home/buildd/build-780840-1837653/chroot-autobuild --purge libncurses5-dev quilt libcurl3 gettext libreadline5-dev diffstat curl gettext-base (Reading database ... 10955 files and directories currently installed.) Removing quilt ... Purging configuration files for quilt ... Removing gettext ... Removing libreadline5-dev ... Removing diffstat ... Removing curl ... Removing gettext-base ... Removing libncurses5-dev ... Removing libcurl3 ... Purging configuration files for libcurl3 ... Processing triggers for libc6 ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20081129-0604 Build needed 00:07:37, 9856k disk space Can't open average time db /var/debbuild/avg-build-times Can't open average space db /var/debbuild/avg-build-space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '780840-1837653'] Scanning for processes to kill in build 780840-1837653... Scanning for processes to kill in build /home/buildd/build-780840-1837653/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '780840-1837653'] Unmounting chroot for build 780840-1837653... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '780840-1837653'] Removing build 780840-1837653