RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux fisher03 3.13.0-16-generic #36-Ubuntu SMP Tue Mar 4 23:03:28 UTC 2014 ppc64le Buildd toolchain package versions: launchpad-buildd_124~0.IS.08.04 python-lpbuildd_124~0.IS.08.04 dpkg-dev_1.17.5ubuntu4. Syncing the system clock with the buildd NTP service... 26 Oct 07:04:40 ntpdate[20481]: adjust time server 10.211.37.1 offset -0.001380 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-6505006', '/home/buildd/filecache-default/0ef1c011ee7ed9eb33dd33237ba11b0bf82afae6'] Unpacking chroot for build PACKAGEBUILD-6505006 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-6505006'] Mounting chroot for build PACKAGEBUILD-6505006 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-6505006', 'deb http://ftpmaster.internal/ubuntu vivid main universe', 'deb http://ftpmaster.internal/ubuntu vivid-security main universe', 'deb http://ftpmaster.internal/ubuntu vivid-updates main universe', 'deb http://ftpmaster.internal/ubuntu vivid-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-6505006 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-6505006', 'ppc64el'] Updating debian chroot for build PACKAGEBUILD-6505006 Ign http://ftpmaster.internal vivid InRelease Ign http://archive-team.internal vivid InRelease Ign http://ftpmaster.internal vivid-security InRelease Ign http://archive-team.internal vivid Release.gpg Ign http://ftpmaster.internal vivid-updates InRelease Get:1 http://archive-team.internal vivid Release [742 B] Ign http://ftpmaster.internal vivid-proposed InRelease Get:2 http://ftpmaster.internal vivid Release.gpg [933 B] Get:3 http://ftpmaster.internal vivid-security Release.gpg [933 B] Get:4 http://ftpmaster.internal vivid-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal vivid-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal vivid Release [112 kB] Get:7 http://archive-team.internal vivid/main ppc64el Packages Get:8 http://ftpmaster.internal vivid-security Release [59.7 kB] Ign http://archive-team.internal vivid/main Translation-en Get:9 http://ftpmaster.internal vivid-updates Release [59.7 kB] Get:10 http://ftpmaster.internal vivid-proposed Release [59.7 kB] Get:11 http://ftpmaster.internal vivid/main ppc64el Packages [1281 kB] Get:12 http://ftpmaster.internal vivid/universe ppc64el Packages [5961 kB] Get:13 http://ftpmaster.internal vivid/main Translation-en [769 kB] Get:14 http://ftpmaster.internal vivid/universe Translation-en [4345 kB] Get:15 http://ftpmaster.internal vivid-security/main ppc64el Packages [14 B] Get:16 http://ftpmaster.internal vivid-security/universe ppc64el Packages [14 B] Get:17 http://ftpmaster.internal vivid-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal vivid-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal vivid-updates/main ppc64el Packages [14 B] Get:20 http://ftpmaster.internal vivid-updates/universe ppc64el Packages [14 B] Get:21 http://ftpmaster.internal vivid-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal vivid-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal vivid-proposed/main ppc64el Packages [35.5 kB] Get:24 http://ftpmaster.internal vivid-proposed/universe ppc64el Packages [283 kB] Get:25 http://ftpmaster.internal vivid-proposed/main Translation-en [44.6 kB] Get:26 http://ftpmaster.internal vivid-proposed/universe Translation-en [278 kB] Fetched 13.3 MB in 6s (2078 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: base-files binutils ca-certificates cpp-4.9 g++-4.9 gcc-4.9 gcc-4.9-base grep libacl1 libatomic1 libdb5.3 libdrm2 libgcc-4.9-dev libgcc1 libgmp10 libgomp1 libgpg-error0 libgssapi-krb5-2 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 libp11-kit0 libplymouth4 libsasl2-2 libsasl2-modules-db libselinux1 libsqlite3-0 libstdc++-4.9-dev libstdc++6 libsystemd-journal0 libtasn1-6 libudev1 libusb-0.1-4 patch perl perl-base perl-modules plymouth tzdata udev 41 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 36.2 MB of archives. After this operation, 302 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ vivid/main base-files ppc64el 7.2ubuntu8 [60.4 kB] Get:2 http://ftpmaster.internal/ubuntu/ vivid/main grep ppc64el 2.20-4 [139 kB] Get:3 http://ftpmaster.internal/ubuntu/ vivid-proposed/main perl ppc64el 5.20.1-2 [2579 kB] Get:4 http://ftpmaster.internal/ubuntu/ vivid-proposed/main perl-base ppc64el 5.20.1-2 [1114 kB] Get:5 http://ftpmaster.internal/ubuntu/ vivid-proposed/main perl-modules all 5.20.1-2 [2531 kB] Get:6 http://ftpmaster.internal/ubuntu/ vivid/main libdb5.3 ppc64el 5.3.28-6 [633 kB] Get:7 http://ftpmaster.internal/ubuntu/ vivid-proposed/main gcc-4.9-base ppc64el 4.9.1-19ubuntu1 [15.7 kB] Get:8 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libstdc++6 ppc64el 4.9.1-19ubuntu1 [297 kB] Get:9 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgomp1 ppc64el 4.9.1-19ubuntu1 [36.6 kB] Get:10 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libitm1 ppc64el 4.9.1-19ubuntu1 [30.1 kB] Get:11 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libatomic1 ppc64el 4.9.1-19ubuntu1 [8234 B] Get:12 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgcc-4.9-dev ppc64el 4.9.1-19ubuntu1 [266 kB] Get:13 http://ftpmaster.internal/ubuntu/ vivid-proposed/main cpp-4.9 ppc64el 4.9.1-19ubuntu1 [4775 kB] Get:14 http://ftpmaster.internal/ubuntu/ vivid-proposed/main binutils ppc64el 2.24.90.20141023-1ubuntu1 [2173 kB] Get:15 http://ftpmaster.internal/ubuntu/ vivid-proposed/main gcc-4.9 ppc64el 4.9.1-19ubuntu1 [5194 kB] Get:16 http://ftpmaster.internal/ubuntu/ vivid-proposed/main g++-4.9 ppc64el 4.9.1-19ubuntu1 [12.2 MB] Get:17 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libstdc++-4.9-dev ppc64el 4.9.1-19ubuntu1 [1129 kB] Get:18 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgcc1 ppc64el 1:4.9.1-19ubuntu1 [29.3 kB] Get:19 http://ftpmaster.internal/ubuntu/ vivid/main libgmp10 ppc64el 2:6.0.0+dfsg-6 [223 kB] Get:20 http://ftpmaster.internal/ubuntu/ vivid/main libusb-0.1-4 ppc64el 2:0.1.12-25 [15.5 kB] Get:21 http://ftpmaster.internal/ubuntu/ vivid/main libacl1 ppc64el 2.2.52-2 [15.6 kB] Get:22 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgpg-error0 ppc64el 1.17-2 [34.3 kB] Get:23 http://ftpmaster.internal/ubuntu/ vivid/main libselinux1 ppc64el 2.3-2 [59.0 kB] Get:24 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libsystemd-journal0 ppc64el 215-5ubuntu1 [55.2 kB] Get:25 http://ftpmaster.internal/ubuntu/ vivid/main libp11-kit0 ppc64el 0.20.7-1 [76.3 kB] Get:26 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libsqlite3-0 ppc64el 3.8.7-1 [338 kB] Get:27 http://ftpmaster.internal/ubuntu/ vivid/main libtasn1-6 ppc64el 4.2-2 [42.1 kB] Get:28 http://ftpmaster.internal/ubuntu/ vivid/main libdrm2 ppc64el 2.4.58-2 [23.1 kB] Get:29 http://ftpmaster.internal/ubuntu/ vivid/main plymouth ppc64el 0.9.0-0ubuntu8 [95.9 kB] Get:30 http://ftpmaster.internal/ubuntu/ vivid-proposed/main udev ppc64el 215-5ubuntu1 [855 kB] Get:31 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libudev1 ppc64el 215-5ubuntu1 [34.4 kB] Get:32 http://ftpmaster.internal/ubuntu/ vivid/main libplymouth4 ppc64el 0.9.0-0ubuntu8 [81.2 kB] Get:33 http://ftpmaster.internal/ubuntu/ vivid/main libgssapi-krb5-2 ppc64el 1.12.1+dfsg-11 [109 kB] Get:34 http://ftpmaster.internal/ubuntu/ vivid/main libkrb5-3 ppc64el 1.12.1+dfsg-11 [265 kB] Get:35 http://ftpmaster.internal/ubuntu/ vivid/main libkrb5support0 ppc64el 1.12.1+dfsg-11 [29.8 kB] Get:36 http://ftpmaster.internal/ubuntu/ vivid/main libk5crypto3 ppc64el 1.12.1+dfsg-11 [101 kB] Get:37 http://ftpmaster.internal/ubuntu/ vivid/main libsasl2-modules-db ppc64el 2.1.26.dfsg1-12 [14.2 kB] Get:38 http://ftpmaster.internal/ubuntu/ vivid/main libsasl2-2 ppc64el 2.1.26.dfsg1-12 [48.2 kB] Get:39 http://ftpmaster.internal/ubuntu/ vivid/main tzdata all 2014i-1 [182 kB] Get:40 http://ftpmaster.internal/ubuntu/ vivid/main ca-certificates all 20141019 [192 kB] Get:41 http://ftpmaster.internal/ubuntu/ vivid/main patch ppc64el 2.7.1-6 [81.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 36.2 MB in 12s (2902 kB/s) (Reading database ... 11386 files and directories currently installed.) Preparing to unpack .../base-files_7.2ubuntu8_ppc64el.deb ... Unpacking base-files (7.2ubuntu8) over (7.2ubuntu7) ... Setting up base-files (7.2ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/os-release ... (Reading database ... 11386 files and directories currently installed.) Preparing to unpack .../grep_2.20-4_ppc64el.deb ... Unpacking grep (2.20-4) over (2.20-3) ... Setting up grep (2.20-4) ... (Reading database ... 11386 files and directories currently installed.) Preparing to unpack .../perl_5.20.1-2_ppc64el.deb ... Unpacking perl (5.20.1-2) over (5.20.1-1) ... Preparing to unpack .../perl-base_5.20.1-2_ppc64el.deb ... Unpacking perl-base (5.20.1-2) over (5.20.1-1) ... Setting up perl-base (5.20.1-2) ... (Reading database ... 11386 files and directories currently installed.) Preparing to unpack .../perl-modules_5.20.1-2_all.deb ... Unpacking perl-modules (5.20.1-2) over (5.20.1-1) ... Preparing to unpack .../libdb5.3_5.3.28-6_ppc64el.deb ... Unpacking libdb5.3:ppc64el (5.3.28-6) over (5.3.28-5) ... Setting up libdb5.3:ppc64el (5.3.28-6) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11386 files and directories currently installed.) Preparing to unpack .../gcc-4.9-base_4.9.1-19ubuntu1_ppc64el.deb ... Unpacking gcc-4.9-base:ppc64el (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Setting up gcc-4.9-base:ppc64el (4.9.1-19ubuntu1) ... (Reading database ... 11386 files and directories currently installed.) Preparing to unpack .../libstdc++6_4.9.1-19ubuntu1_ppc64el.deb ... Unpacking libstdc++6:ppc64el (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Setting up libstdc++6:ppc64el (4.9.1-19ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11386 files and directories currently installed.) Preparing to unpack .../libgomp1_4.9.1-19ubuntu1_ppc64el.deb ... Unpacking libgomp1:ppc64el (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libitm1_4.9.1-19ubuntu1_ppc64el.deb ... Unpacking libitm1:ppc64el (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libatomic1_4.9.1-19ubuntu1_ppc64el.deb ... Unpacking libatomic1:ppc64el (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libgcc-4.9-dev_4.9.1-19ubuntu1_ppc64el.deb ... Unpacking libgcc-4.9-dev:ppc64el (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../cpp-4.9_4.9.1-19ubuntu1_ppc64el.deb ... Unpacking cpp-4.9 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../binutils_2.24.90.20141023-1ubuntu1_ppc64el.deb ... Unpacking binutils (2.24.90.20141023-1ubuntu1) over (2.24.90.20141014-0ubuntu3) ... Preparing to unpack .../gcc-4.9_4.9.1-19ubuntu1_ppc64el.deb ... Unpacking gcc-4.9 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... 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(Reading database ... 11387 files and directories currently installed.) Preparing to unpack .../libacl1_2.2.52-2_ppc64el.deb ... Unpacking libacl1:ppc64el (2.2.52-2) over (2.2.52-1.1) ... Setting up libacl1:ppc64el (2.2.52-2) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11387 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.17-2_ppc64el.deb ... Unpacking libgpg-error0:ppc64el (1.17-2) over (1.13-4) ... Setting up libgpg-error0:ppc64el (1.17-2) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11387 files and directories currently installed.) Preparing to unpack .../libselinux1_2.3-2_ppc64el.deb ... Unpacking libselinux1:ppc64el (2.3-2) over (2.3-1build1) ... Setting up libselinux1:ppc64el (2.3-2) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11387 files and directories currently installed.) Preparing to unpack .../libsystemd-journal0_215-5ubuntu1_ppc64el.deb ... Unpacking libsystemd-journal0:ppc64el (215-5ubuntu1) over (208-8ubuntu8) ... Setting up libsystemd-journal0:ppc64el (215-5ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11387 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.20.7-1_ppc64el.deb ... Unpacking libp11-kit0:ppc64el (0.20.7-1) over (0.20.2-5) ... Preparing to unpack .../libsqlite3-0_3.8.7-1_ppc64el.deb ... Unpacking libsqlite3-0:ppc64el (3.8.7-1) over (3.8.6-1) ... Preparing to unpack .../libtasn1-6_4.2-2_ppc64el.deb ... Unpacking libtasn1-6:ppc64el (4.2-2) over (4.0-2) ... Preparing to unpack .../libdrm2_2.4.58-2_ppc64el.deb ... Unpacking libdrm2:ppc64el (2.4.58-2) over (2.4.56-1) ... Preparing to unpack .../plymouth_0.9.0-0ubuntu8_ppc64el.deb ... Unpacking plymouth (0.9.0-0ubuntu8) over (0.9.0-0ubuntu7) ... Preparing to unpack .../udev_215-5ubuntu1_ppc64el.deb ... Unpacking udev (215-5ubuntu1) over (208-8ubuntu8) ... Preparing to unpack .../libudev1_215-5ubuntu1_ppc64el.deb ... Unpacking libudev1:ppc64el (215-5ubuntu1) over (208-8ubuntu8) ... Preparing to unpack .../libplymouth4_0.9.0-0ubuntu8_ppc64el.deb ... Unpacking libplymouth4:ppc64el (0.9.0-0ubuntu8) over (0.9.0-0ubuntu7) ... Preparing to unpack .../libgssapi-krb5-2_1.12.1+dfsg-11_ppc64el.deb ... Unpacking libgssapi-krb5-2:ppc64el (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libkrb5-3_1.12.1+dfsg-11_ppc64el.deb ... Unpacking libkrb5-3:ppc64el (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libkrb5support0_1.12.1+dfsg-11_ppc64el.deb ... Unpacking libkrb5support0:ppc64el (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libk5crypto3_1.12.1+dfsg-11_ppc64el.deb ... Unpacking libk5crypto3:ppc64el (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-12_ppc64el.deb ... Unpacking libsasl2-modules-db:ppc64el (2.1.26.dfsg1-12) over (2.1.26.dfsg1-11) ... Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-12_ppc64el.deb ... Unpacking libsasl2-2:ppc64el (2.1.26.dfsg1-12) over (2.1.26.dfsg1-11) ... Preparing to unpack .../tzdata_2014i-1_all.deb ... Unpacking tzdata (2014i-1) over (2014h-2) ... Setting up tzdata (2014i-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Oct 26 11:05:11 UTC 2014. Universal Time is now: Sun Oct 26 11:05:11 UTC 2014. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 11392 files and directories currently installed.) Preparing to unpack .../ca-certificates_20141019_all.deb ... Unpacking ca-certificates (20141019) over (20140325) ... Preparing to unpack .../patch_2.7.1-6_ppc64el.deb ... Unpacking patch (2.7.1-6) over (2.7.1-5) ... Setting up libgomp1:ppc64el (4.9.1-19ubuntu1) ... Setting up libitm1:ppc64el (4.9.1-19ubuntu1) ... Setting up libatomic1:ppc64el (4.9.1-19ubuntu1) ... Setting up libgcc-4.9-dev:ppc64el (4.9.1-19ubuntu1) ... Setting up libgmp10:ppc64el (2:6.0.0+dfsg-6) ... Setting up cpp-4.9 (4.9.1-19ubuntu1) ... Setting up binutils (2.24.90.20141023-1ubuntu1) ... Setting up gcc-4.9 (4.9.1-19ubuntu1) ... Setting up libstdc++-4.9-dev:ppc64el (4.9.1-19ubuntu1) ... Setting up g++-4.9 (4.9.1-19ubuntu1) ... Setting up libp11-kit0:ppc64el (0.20.7-1) ... Setting up libsqlite3-0:ppc64el (3.8.7-1) ... Setting up libtasn1-6:ppc64el (4.2-2) ... Setting up libdrm2:ppc64el (2.4.58-2) ... Setting up libudev1:ppc64el (215-5ubuntu1) ... Setting up libplymouth4:ppc64el (0.9.0-0ubuntu8) ... Setting up udev (215-5ubuntu1) ... Installing new version of config file /etc/init.d/udev-finish ... A chroot environment has been detected, udev not started. update-initramfs: deferring update (trigger activated) Removing obsolete conffile /etc/udev/rules.d/README ... Setting up plymouth (0.9.0-0ubuntu8) ... update-initramfs: deferring update (trigger activated) Setting up libkrb5support0:ppc64el (1.12.1+dfsg-11) ... Setting up libk5crypto3:ppc64el (1.12.1+dfsg-11) ... Setting up libkrb5-3:ppc64el (1.12.1+dfsg-11) ... Setting up libgssapi-krb5-2:ppc64el (1.12.1+dfsg-11) ... Setting up libsasl2-modules-db:ppc64el (2.1.26.dfsg1-12) ... Setting up libsasl2-2:ppc64el (2.1.26.dfsg1-12) ... Setting up ca-certificates (20141019) ... Setting up patch (2.7.1-6) ... Setting up perl-modules (5.20.1-2) ... Setting up perl (5.20.1-2) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... Processing triggers for initramfs-tools (0.103ubuntu8) ... Processing triggers for ca-certificates (20141019) ... Updating certificates in /etc/ssl/certs... 10 added, 5 removed; done. Running hooks in /etc/ca-certificates/update.d....done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-6505006', 'ppc64el', 'vivid-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=vivid-proposed', '--purpose=PRIMARY', '--architecture=ppc64el', '--comp=universe', 'mrbayes_3.2.3+dfsg-1.dsc'] Initiating build PACKAGEBUILD-6505006 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.13.0-16-generic #36-Ubuntu SMP Tue Mar 4 23:03:28 UTC 2014 ppc64le Automatic build of mrbayes_3.2.3+dfsg-1 on fisher03 by sbuild/ppc64el 1.170.5 Build started at 20141026-0705 ****************************************************************************** mrbayes_3.2.3+dfsg-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), libreadline-dev, mpi-default-dev, libhmsbeagle-dev (<< 2.1-1) | libhmsbeagle-dev (>= 2.1-2), autoconf, automake Checking for already installed source dependencies... debhelper: missing libreadline-dev: missing mpi-default-dev: missing libhmsbeagle-dev: missing libhmsbeagle-dev: missing autoconf: missing automake: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper libreadline-dev mpi-default-dev libhmsbeagle-dev autoconf automake Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autotools-dev bsdmainutils dh-apparmor file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libglib2.0-0 libhmsbeagle1 libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libltdl7 libmagic1 libopenmpi-dev libopenmpi1.6 libpci-dev libpci3 libpipeline1 libreadline6-dev libsigsegv2 libtinfo-dev libtorque2 libunistring0 libxml2 libxml2-dev m4 man-db openmpi-common po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation dh-make apparmor-easyprof gettext-doc groff libhwloc-contrib-plugins readline-doc pkg-config less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs libhwloc-plugins xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils debhelper dh-apparmor file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libglib2.0-0 libhmsbeagle-dev libhmsbeagle1 libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libltdl7 libmagic1 libopenmpi-dev libopenmpi1.6 libpci-dev libpci3 libpipeline1 libreadline-dev libreadline6-dev libsigsegv2 libtinfo-dev libtorque2 libunistring0 libxml2 libxml2-dev m4 man-db mpi-default-dev openmpi-common po-debconf zlib1g-dev 0 upgraded, 41 newly installed, 0 to remove and 0 not upgraded. Need to get 11.1 MB of archives. After this operation, 50.2 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ vivid/main libmagic1 ppc64el 1:5.19-1ubuntu1.1 [206 kB] Get:2 http://ftpmaster.internal/ubuntu/ vivid/main libasprintf0c2 ppc64el 0.19.2-2ubuntu1 [6352 B] Get:3 http://ftpmaster.internal/ubuntu/ vivid/main libglib2.0-0 ppc64el 2.42.0-2 [1024 kB] Get:4 http://ftpmaster.internal/ubuntu/ vivid/main libpci3 ppc64el 1:3.2.1-1ubuntu9 [22.2 kB] Get:5 http://ftpmaster.internal/ubuntu/ vivid/main libpipeline1 ppc64el 1.4.0-1 [24.2 kB] Get:6 http://ftpmaster.internal/ubuntu/ vivid/main libxml2 ppc64el 2.9.1+dfsg1-4ubuntu1 [617 kB] Get:7 http://ftpmaster.internal/ubuntu/ vivid/main groff-base ppc64el 1.22.2-8 [1385 kB] Get:8 http://ftpmaster.internal/ubuntu/ vivid/main bsdmainutils ppc64el 9.0.5ubuntu1 [173 kB] Get:9 http://ftpmaster.internal/ubuntu/ vivid/main man-db ppc64el 2.7.0.2-2 [852 kB] Get:10 http://ftpmaster.internal/ubuntu/ vivid/main libcroco3 ppc64el 0.6.8-3 [77.2 kB] Get:11 http://ftpmaster.internal/ubuntu/ vivid/main libltdl7 ppc64el 2.4.2-1.11 [38.2 kB] Get:12 http://ftpmaster.internal/ubuntu/ vivid/main libsigsegv2 ppc64el 2.10-4 [13.9 kB] Get:13 http://ftpmaster.internal/ubuntu/ vivid/main libunistring0 ppc64el 0.9.3-5ubuntu3 [262 kB] Get:14 http://ftpmaster.internal/ubuntu/ vivid/universe libhmsbeagle1 ppc64el 2.1.2-1 [77.7 kB] Get:15 http://ftpmaster.internal/ubuntu/ vivid/universe libhwloc5 ppc64el 1.8-1ubuntu1 [62.9 kB] Get:16 http://ftpmaster.internal/ubuntu/ vivid/main file ppc64el 1:5.19-1ubuntu1.1 [20.4 kB] Get:17 http://ftpmaster.internal/ubuntu/ vivid/main gettext-base ppc64el 0.19.2-2ubuntu1 [46.5 kB] Get:18 http://ftpmaster.internal/ubuntu/ vivid/main m4 ppc64el 1.4.17-4 [194 kB] Get:19 http://ftpmaster.internal/ubuntu/ vivid/main autoconf all 2.69-8 [321 kB] Get:20 http://ftpmaster.internal/ubuntu/ vivid/main autotools-dev all 20140911.1 [39.6 kB] Get:21 http://ftpmaster.internal/ubuntu/ vivid/main automake all 1:1.14.1-3ubuntu1 [510 kB] Get:22 http://ftpmaster.internal/ubuntu/ vivid/main gettext ppc64el 0.19.2-2ubuntu1 [866 kB] Get:23 http://ftpmaster.internal/ubuntu/ vivid/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:24 http://ftpmaster.internal/ubuntu/ vivid/main po-debconf all 1.0.16+nmu3 [207 kB] Get:25 http://ftpmaster.internal/ubuntu/ vivid/main dh-apparmor all 2.8.98-0ubuntu2 [11.0 kB] Get:26 http://ftpmaster.internal/ubuntu/ vivid/main debhelper all 9.20141003ubuntu1 [726 kB] Get:27 http://ftpmaster.internal/ubuntu/ vivid/main zlib1g-dev ppc64el 1:1.2.8.dfsg-1ubuntu1 [166 kB] Get:28 http://ftpmaster.internal/ubuntu/ vivid/main libpci-dev ppc64el 1:3.2.1-1ubuntu9 [40.9 kB] Get:29 http://ftpmaster.internal/ubuntu/ vivid/main libtinfo-dev ppc64el 5.9+20140712-2ubuntu1 [87.2 kB] Get:30 http://ftpmaster.internal/ubuntu/ vivid/main libreadline6-dev ppc64el 6.3-8ubuntu1 [156 kB] Get:31 http://ftpmaster.internal/ubuntu/ vivid/main libreadline-dev ppc64el 6.3-8ubuntu1 [1044 B] Get:32 http://ftpmaster.internal/ubuntu/ vivid/universe libtorque2 ppc64el 2.4.16+dfsg-1.4ubuntu1 [72.2 kB] Get:33 http://ftpmaster.internal/ubuntu/ vivid/main libxml2-dev ppc64el 2.9.1+dfsg1-4ubuntu1 [707 kB] Get:34 http://ftpmaster.internal/ubuntu/ vivid/universe openmpi-common all 1.6.5-8 [101 kB] Get:35 http://ftpmaster.internal/ubuntu/ vivid/universe libhmsbeagle-dev ppc64el 2.1.2-1 [159 kB] Get:36 http://ftpmaster.internal/ubuntu/ vivid/universe libhwloc-dev ppc64el 1.8-1ubuntu1 [121 kB] Get:37 http://ftpmaster.internal/ubuntu/ vivid/main libibverbs1 ppc64el 1.1.8-1ubuntu1 [23.7 kB] Get:38 http://ftpmaster.internal/ubuntu/ vivid/main libibverbs-dev ppc64el 1.1.8-1ubuntu1 [77.8 kB] Get:39 http://ftpmaster.internal/ubuntu/ vivid/universe libopenmpi1.6 ppc64el 1.6.5-8 [1193 kB] Get:40 http://ftpmaster.internal/ubuntu/ vivid/universe libopenmpi-dev ppc64el 1.6.5-8 [380 kB] Get:41 http://ftpmaster.internal/ubuntu/ vivid/universe mpi-default-dev ppc64el 1.0.2+nmu2 [4010 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.1 MB in 7s (1391 kB/s) Selecting previously unselected package libmagic1:ppc64el. (Reading database ... 11397 files and directories currently installed.) Preparing to unpack .../libmagic1_1%3a5.19-1ubuntu1.1_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.19-1ubuntu1.1) ... Selecting previously unselected package libasprintf0c2:ppc64el. Preparing to unpack .../libasprintf0c2_0.19.2-2ubuntu1_ppc64el.deb ... Unpacking libasprintf0c2:ppc64el (0.19.2-2ubuntu1) ... Selecting previously unselected package libglib2.0-0:ppc64el. Preparing to unpack .../libglib2.0-0_2.42.0-2_ppc64el.deb ... Unpacking libglib2.0-0:ppc64el (2.42.0-2) ... Selecting previously unselected package libpci3:ppc64el. Preparing to unpack .../libpci3_1%3a3.2.1-1ubuntu9_ppc64el.deb ... Unpacking libpci3:ppc64el (1:3.2.1-1ubuntu9) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../libpipeline1_1.4.0-1_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.4.0-1) ... Selecting previously unselected package libxml2:ppc64el. 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Setting up libmagic1:ppc64el (1:5.19-1ubuntu1.1) ... Setting up libasprintf0c2:ppc64el (0.19.2-2ubuntu1) ... Setting up libglib2.0-0:ppc64el (2.42.0-2) ... No schema files found: doing nothing. Setting up libpci3:ppc64el (1:3.2.1-1ubuntu9) ... Setting up libpipeline1:ppc64el (1.4.0-1) ... Setting up libxml2:ppc64el (2.9.1+dfsg1-4ubuntu1) ... Setting up groff-base (1.22.2-8) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.7.0.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:ppc64el (0.6.8-3) ... Setting up libltdl7:ppc64el (2.4.2-1.11) ... Setting up libsigsegv2:ppc64el (2.10-4) ... Setting up libunistring0:ppc64el (0.9.3-5ubuntu3) ... Setting up libhmsbeagle1 (2.1.2-1) ... Setting up libhwloc5:ppc64el (1.8-1ubuntu1) ... Setting up file (1:5.19-1ubuntu1.1) ... Setting up gettext-base (0.19.2-2ubuntu1) ... Setting up m4 (1.4.17-4) ... Setting up autoconf (2.69-8) ... Setting up autotools-dev (20140911.1) ... Setting up automake (1:1.14.1-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.14 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.2-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu3) ... Setting up dh-apparmor (2.8.98-0ubuntu2) ... Setting up debhelper (9.20141003ubuntu1) ... Setting up zlib1g-dev:ppc64el (1:1.2.8.dfsg-1ubuntu1) ... Setting up libpci-dev (1:3.2.1-1ubuntu9) ... Setting up libtinfo-dev:ppc64el (5.9+20140712-2ubuntu1) ... Setting up libreadline6-dev:ppc64el (6.3-8ubuntu1) ... Setting up libreadline-dev:ppc64el (6.3-8ubuntu1) ... Setting up libtorque2 (2.4.16+dfsg-1.4ubuntu1) ... Setting up libxml2-dev:ppc64el (2.9.1+dfsg1-4ubuntu1) ... Setting up openmpi-common (1.6.5-8) ... Setting up libhmsbeagle-dev (2.1.2-1) ... Setting up libhwloc-dev:ppc64el (1.8-1ubuntu1) ... Setting up libibverbs1 (1.1.8-1ubuntu1) ... Setting up libibverbs-dev (1.1.8-1ubuntu1) ... Setting up libopenmpi1.6 (1.6.5-8) ... Setting up libopenmpi-dev (1.6.5-8) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up mpi-default-dev (1.0.2+nmu2) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.19-10ubuntu2 make_4.0-8 dpkg-dev_1.17.13ubuntu1 gcc-4.9_4.9.1-19ubuntu1 g++-4.9_4.9.1-19ubuntu1 binutils_2.24.90.20141023-1ubuntu1 libstdc++-4.9-dev_4.9.1-19ubuntu1 libstdc++6_4.9.1-19ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Sat Oct 25 08:16:32 2014 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./mrbayes_3.2.3+dfsg-1.dsc dpkg-source: info: extracting mrbayes in mrbayes-3.2.3+dfsg dpkg-source: info: unpacking mrbayes_3.2.3+dfsg.orig.tar.xz dpkg-source: info: unpacking mrbayes_3.2.3+dfsg-1.debian.tar.xz dpkg-source: info: applying as-needed.patch dpkg-source: info: applying ldlibs.patch dpkg-buildpackage: source package mrbayes dpkg-buildpackage: source version 3.2.3+dfsg-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build mrbayes-3.2.3+dfsg dpkg-buildpackage: host architecture ppc64el /usr/bin/fakeroot debian/rules clean dh clean --sourcedirectory=src dh_testdir -O--sourcedirectory=src debian/rules override_dh_auto_clean make[1]: Entering directory '/build/buildd/mrbayes-3.2.3+dfsg' ( cd src ; /usr/bin/make -f Makefile.in distclean ) make[2]: Entering directory '/build/buildd/mrbayes-3.2.3+dfsg/src' rm -f *.o *~ mb rm -rf Makefile config.log config.status config.h *.cache make[2]: Leaving directory '/build/buildd/mrbayes-3.2.3+dfsg/src' rm -f src/configure rm -f mb mb-mpi src/mb make[1]: Leaving directory '/build/buildd/mrbayes-3.2.3+dfsg' dh_clean -O--sourcedirectory=src debian/rules build-arch dh build-arch --sourcedirectory=src dh_testdir -a -O--sourcedirectory=src debian/rules override_dh_auto_configure make[1]: Entering directory '/build/buildd/mrbayes-3.2.3+dfsg' #Configure for MPI at first ( cd src ; autoconf ) dh_auto_configure -- --with-beagle=/usr --enable-mpi=yes --enable-debug=yes configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking configure: NOTICE: Because the variable $CFLAGS is defined in your shell, the default MrBayes flags will be overridden. To ensure optimal performance, please check that your $CFLAGS variable is set correctly. Alternatively, unset the $CFLAGS variable in your shell in order to use the default MrBayes compiler options. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for exp in -lm... yes checking for a BSD-compatible install... /usr/bin/install -c checking for mpicc... yes checking for SSE support... no checking for /usr/include/libhmsbeagle/libhmsbeagle/beagle.h... no checking for /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h... yes checking for /usr/include/libhmsbeagle/libhmsbeagle/platform.h... no checking for /usr/include/libhmsbeagle-1/libhmsbeagle/platform.h... yes checking for /usr/lib... yes checking for readline in -lreadline... yes checking for rl_completion_matches function... yes checking for 32 or 64 bits cpu... 64 configure: creating ./config.status config.status: creating Makefile config.status: creating config.h configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking make[1]: Leaving directory '/build/buildd/mrbayes-3.2.3+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/buildd/mrbayes-3.2.3+dfsg' # build mb-mpi (from initial config) LIBS="-Wl,--as-needed" dh_auto_build make[2]: Entering directory '/build/buildd/mrbayes-3.2.3+dfsg/src' mpicc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o bayes.o bayes.c mpicc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o command.o command.c mpicc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mcmc.o mcmc.c mpicc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o model.o model.c mpicc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o proposal.o proposal.c mpicc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o sumpt.o sumpt.c mpicc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c mpicc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mbbeagle.o mbbeagle.c mpicc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o best.o best.c mpicc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -o mb bayes.o command.o mcmc.o model.o proposal.o sumpt.o utils.o mbbeagle.o best.o -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -lhmsbeagle -lreadline -lm make[2]: Leaving directory '/build/buildd/mrbayes-3.2.3+dfsg/src' mv src/mb ./mb-mpi # Now - build mb ( cd src ; make clean ) make[2]: Entering directory '/build/buildd/mrbayes-3.2.3+dfsg/src' rm -f *.o *~ mb make[2]: Leaving directory '/build/buildd/mrbayes-3.2.3+dfsg/src' dh_auto_configure -- --with-beagle=/usr --enable-mpi=no --enable-debug=yes configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking configure: NOTICE: Because the variable $CFLAGS is defined in your shell, the default MrBayes flags will be overridden. To ensure optimal performance, please check that your $CFLAGS variable is set correctly. Alternatively, unset the $CFLAGS variable in your shell in order to use the default MrBayes compiler options. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for exp in -lm... yes checking for a BSD-compatible install... /usr/bin/install -c checking for SSE support... no checking for /usr/include/libhmsbeagle/libhmsbeagle/beagle.h... no checking for /usr/include/libhmsbeagle-1/libhmsbeagle/beagle.h... yes checking for /usr/include/libhmsbeagle/libhmsbeagle/platform.h... no checking for /usr/include/libhmsbeagle-1/libhmsbeagle/platform.h... yes checking for /usr/lib... yes checking for readline in -lreadline... yes checking for rl_completion_matches function... yes checking for 32 or 64 bits cpu... 64 configure: creating ./config.status config.status: creating Makefile config.status: creating config.h configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking LIBS="-Wl,--as-needed" dh_auto_build make[2]: Entering directory '/build/buildd/mrbayes-3.2.3+dfsg/src' gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o bayes.o bayes.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o command.o command.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mcmc.o mcmc.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o model.o model.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o proposal.o proposal.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o sumpt.o sumpt.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o mbbeagle.o mbbeagle.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -D_FORTIFY_SOURCE=2 -c -o best.o best.c gcc -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/libhmsbeagle-1 -DUSECONFIG_H -o mb bayes.o command.o mcmc.o model.o proposal.o sumpt.o utils.o mbbeagle.o best.o -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib -lhmsbeagle -lreadline -lm make[2]: Leaving directory '/build/buildd/mrbayes-3.2.3+dfsg/src' mv src/mb . make[1]: Leaving directory '/build/buildd/mrbayes-3.2.3+dfsg' dh_auto_test -a -O--sourcedirectory=src /usr/bin/fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src debian/rules override_dh_auto_install make[1]: Entering directory '/build/buildd/mrbayes-3.2.3+dfsg' echo "Do not try to install to /usr/local/bin" Do not try to install to /usr/local/bin make[1]: Leaving directory '/build/buildd/mrbayes-3.2.3+dfsg' dh_install -a -O--sourcedirectory=src dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src dh_installman -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src dh_link -a -O--sourcedirectory=src debian/rules override_dh_compress make[1]: Entering directory '/build/buildd/mrbayes-3.2.3+dfsg' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/buildd/mrbayes-3.2.3+dfsg' dh_fixperms -a -O--sourcedirectory=src debian/rules override_dh_strip make[1]: Entering directory '/build/buildd/mrbayes-3.2.3+dfsg' dh_strip --dbg-package=mrbayes-dbg dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform ppc64el: mrbayes mrbayes-mpi mrbayes-dbg dh_strip debug symbol extraction: not adding gnu debuglinks since --dbg-package is given dh_strip debug symbol extraction: packages to act on: mrbayes mrbayes-mpi mrbayes-dbg dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 we have -dbg package(s), not installing anything into ddeb find: `/build/buildd/mrbayes-3.2.3+dfsg/debian/mrbayes-dbgsym': No such file or directory dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: building ddeb package dpkg-deb: building package `mrbayes-dbgsym' in `../mrbayes-dbgsym_3.2.3+dfsg-1_ppc64el.ddeb'. Using buildid for compat level >= 9 we have -dbg package(s), not installing anything into ddeb find: `/build/buildd/mrbayes-3.2.3+dfsg/debian/mrbayes-mpi-dbgsym': No such file or directory dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: building ddeb package dpkg-deb: building package `mrbayes-mpi-dbgsym' in `../mrbayes-mpi-dbgsym_3.2.3+dfsg-1_ppc64el.ddeb'. make[1]: Leaving directory '/build/buildd/mrbayes-3.2.3+dfsg' dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mrbayes-mpi/usr/lib/mrbayes-mpi/mb-mpi was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src INFO: pkgstriptranslations version 121 pkgstriptranslations: processing mrbayes (in debian/mrbayes); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/mrbayes/DEBIAN/control, package mrbayes, directory debian/mrbayes pkgstripfiles: Truncating usr/share/doc/mrbayes/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package mrbayes took 0 s dpkg-deb: warning: 'debian/mrbayes/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `mrbayes' in `../mrbayes_3.2.3+dfsg-1_ppc64el.deb'. INFO: pkgstriptranslations version 121 pkgstriptranslations: processing mrbayes-mpi (in debian/mrbayes-mpi); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/mrbayes-mpi/DEBIAN/control, package mrbayes-mpi, directory debian/mrbayes-mpi pkgstripfiles: Truncating usr/share/doc/mrbayes-mpi/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package mrbayes-mpi took 0 s dpkg-deb: warning: 'debian/mrbayes-mpi/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `mrbayes-mpi' in `../mrbayes-mpi_3.2.3+dfsg-1_ppc64el.deb'. INFO: pkgstriptranslations version 121 pkgstriptranslations: processing mrbayes-dbg (in debian/mrbayes-dbg); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/mrbayes-dbg/DEBIAN/control, package mrbayes-dbg, directory debian/mrbayes-dbg Searching for duplicated docs in dependency mrbayes... symlinking changelog.Debian.gz in mrbayes-dbg to file in mrbayes pkgstripfiles: PNG optimization for package mrbayes-dbg took 0 s dpkg-deb: warning: 'debian/mrbayes-dbg/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `mrbayes-dbg' in `../mrbayes-dbg_3.2.3+dfsg-1_ppc64el.deb'. dpkg-genchanges -B -mUbuntu Build Daemon >../mrbayes_3.2.3+dfsg-1_ppc64el.changes dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build mrbayes-3.2.3+dfsg dpkg-buildpackage: binary-only upload (no source included) ****************************************************************************** Build finished at 20141026-0708 Publishing debug debs. chroot-autobuild/build/buildd/mrbayes_3.2.3+dfsg-1_ppc64el.deb: new debian package, version 2.0. size 609892 bytes: control archive=943 bytes. 924 bytes, 19 lines control 318 bytes, 5 lines md5sums Package: mrbayes Version: 3.2.3+dfsg-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1912 Depends: libc6 (>= 2.17), libhmsbeagle1, libreadline6 (>= 6.0) Suggests: mrbayes-doc Section: science Priority: optional Homepage: http://mrbayes.csit.fsu.edu/ Description: Bayesian Inference of Phylogeny Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. chroot-autobuild/build/buildd/mrbayes-mpi_3.2.3+dfsg-1_ppc64el.deb: new debian package, version 2.0. size 619904 bytes: control archive=1063 bytes. 1080 bytes, 22 lines control 399 bytes, 6 lines md5sums Package: mrbayes-mpi Source: mrbayes Version: 3.2.3+dfsg-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1952 Depends: libc6 (>= 2.17), libhmsbeagle1, libopenmpi1.6, libreadline6 (>= 6.0), mpi-default-bin Suggests: mpi-default, mrbayes-doc Section: science Priority: optional Homepage: http://mrbayes.csit.fsu.edu/ Description: Bayesian Inference of Phylogeny - mpi version Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. . This package offers a binary compiled for parallel computation with MPI. chroot-autobuild/build/buildd/mrbayes-dbg_3.2.3+dfsg-1_ppc64el.deb: new debian package, version 2.0. size 2010128 bytes: control archive=1055 bytes. 1271 bytes, 24 lines control 282 bytes, 3 lines md5sums Package: mrbayes-dbg Source: mrbayes Version: 3.2.3+dfsg-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2134 Depends: mrbayes (= 3.2.3+dfsg-1) | mrbayes-mpi (= 3.2.3+dfsg-1) Breaks: mrbayes (>> 3.2.3+dfsg-1), mrbayes (<< 3.2.3+dfsg-1), mrbayes-mpi (>> 3.2.3+dfsg-1), mrbayes-mpi (<< 3.2.3+dfsg-1) Section: debug Priority: extra Homepage: http://mrbayes.csit.fsu.edu/ Description: Bayesian Inference of Phylogeny - debug symbols Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. . The package provides the debug symbols that are otherwise stripped from the binaries to reduce the footprint of the package. This package can be installed to help debugging of problems when running mrbayes. chroot-autobuild/build/buildd/mrbayes_3.2.3+dfsg-1_ppc64el.deb: drwxr-xr-x root/root 0 2014-10-26 07:08 ./ drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/ drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/bin/ -rwxr-xr-x root/root 1916832 2014-10-26 07:08 ./usr/bin/mb drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/share/ drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/share/man/ drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/share/man/man1/ -rw-r--r-- root/root 206 2014-10-26 07:08 ./usr/share/man/man1/mb.1.gz drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/share/doc/mrbayes/ -rw-r--r-- root/root 1482 2013-09-12 04:57 ./usr/share/doc/mrbayes/copyright -rw-r--r-- root/root 1628 2014-10-26 07:08 ./usr/share/doc/mrbayes/changelog.Debian.gz -rw-r--r-- root/root 311 2013-09-12 04:57 ./usr/share/doc/mrbayes/README.Debian chroot-autobuild/build/buildd/mrbayes-mpi_3.2.3+dfsg-1_ppc64el.deb: drwxr-xr-x root/root 0 2014-10-26 07:08 ./ drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/ drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/bin/ -rwxr-xr-x root/root 162 2013-09-12 04:57 ./usr/bin/mb-mpi drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/lib/ drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/lib/mrbayes-mpi/ -rwxr-xr-x root/root 1949696 2014-10-26 07:08 ./usr/lib/mrbayes-mpi/mb-mpi drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/share/ drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/share/man/ drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/share/man/man1/ -rw-r--r-- root/root 226 2014-10-26 07:08 ./usr/share/man/man1/mb-mpi.1.gz drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/share/doc/mrbayes-mpi/ -rw-r--r-- root/root 1482 2013-09-12 04:57 ./usr/share/doc/mrbayes-mpi/copyright -rw-r--r-- root/root 1630 2014-10-26 07:08 ./usr/share/doc/mrbayes-mpi/changelog.Debian.gz -rw-r--r-- root/root 348 2013-09-12 04:57 ./usr/share/doc/mrbayes-mpi/README.Debian chroot-autobuild/build/buildd/mrbayes-dbg_3.2.3+dfsg-1_ppc64el.deb: drwxr-xr-x root/root 0 2014-10-26 07:08 ./ drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/ drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/lib/ drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/lib/debug/ drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/lib/debug/.build-id/a8/ -rw-r--r-- root/root 1061088 2014-10-26 07:08 ./usr/lib/debug/.build-id/a8/938e8dbee212601055b3f36e27037bc18f4829.debug drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/lib/debug/.build-id/00/ -rw-r--r-- root/root 1075240 2014-10-26 07:08 ./usr/lib/debug/.build-id/00/a81d1b551fbe28c8f55c87a8b97b50fb2eedd2.debug drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/share/ drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-10-26 07:08 ./usr/share/doc/mrbayes-dbg/ -rw-r--r-- root/root 1482 2013-09-12 04:57 ./usr/share/doc/mrbayes-dbg/copyright lrwxrwxrwx root/root 0 2014-10-26 07:08 ./usr/share/doc/mrbayes-dbg/changelog.Debian.gz -> ../mrbayes/changelog.Debian.gz mrbayes_3.2.3+dfsg-1_ppc64el.changes: Format: 1.8 Date: Sat, 25 Oct 2014 09:38:38 +0200 Source: mrbayes Binary: mrbayes mrbayes-mpi mrbayes-dbg mrbayes-doc Architecture: ppc64el Version: 3.2.3+dfsg-1 Distribution: vivid-proposed Urgency: medium Maintainer: Ubuntu Build Daemon Changed-By: Andreas Tille Description: mrbayes - Bayesian Inference of Phylogeny mrbayes-dbg - Bayesian Inference of Phylogeny - debug symbols mrbayes-doc - Bayesian Inference of Phylogeny - manual mrbayes-mpi - Bayesian Inference of Phylogeny - mpi version Changes: mrbayes (3.2.3+dfsg-1) unstable; urgency=medium . * New upstream version * d/rules - use xz in get-orig-source target - drop redundant xz compression for binary package * Adapt get-orig-source script * cme fix dpkg-control Checksums-Sha1: 0ddf55f3e743906626e8b3406e97d6c683878b5b 609892 mrbayes_3.2.3+dfsg-1_ppc64el.deb dfa7e2a31612093dd041af9bc1e89a3851dd9aac 619904 mrbayes-mpi_3.2.3+dfsg-1_ppc64el.deb 543466e022d32980e1ad905c34e4a1142d3966f3 2010128 mrbayes-dbg_3.2.3+dfsg-1_ppc64el.deb Checksums-Sha256: d75f4214f4fb3fca69590149546dc2f14dd33da357e89afc5b539d6af73bcd2d 609892 mrbayes_3.2.3+dfsg-1_ppc64el.deb d9fcfed41806a993a837c44f68e6ad900c3f278238c81a3e9c51c1f34149831f 619904 mrbayes-mpi_3.2.3+dfsg-1_ppc64el.deb 9d45d8de99494ee5e0abf8323d5d61a606df582982cb1d4ce0e1ec94097f88cb 2010128 mrbayes-dbg_3.2.3+dfsg-1_ppc64el.deb Files: cbeae8517fbbd7bc16367c9cfa5e8c86 609892 science optional mrbayes_3.2.3+dfsg-1_ppc64el.deb 06453740deff223ac0aa6dea3c9a7258 619904 science optional mrbayes-mpi_3.2.3+dfsg-1_ppc64el.deb 3f7febb54a9796e078000a6df22bd5da 2010128 debug extra mrbayes-dbg_3.2.3+dfsg-1_ppc64el.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20141026-0708 Build needed 00:02:54, 39592k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-6505006'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-6505006/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-6505006'] Unmounting chroot for build PACKAGEBUILD-6505006... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-6505006'] Removing build PACKAGEBUILD-6505006