Ubuntu
msxpertsuite package

Change log for msxpertsuite package in Ubuntu

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Deleted in lunar-proposed (Reason: FTBFS, no revdeps, removed from Debian testing, blocks qc...) 
msxpertsuite (5.8.9-1build1) lunar; urgency=medium

  * No-change rebuild against libqcustomplot2.1.

 -- Rik Mills <email address hidden>  Tue, 13 Dec 2022 10:30:56 +0000
Deleted in lunar-release (Reason: FTBFS, no revdeps, removed from Debian testing, blocks qc...)
Obsolete in kinetic-release
Published in jammy-release
Obsolete in impish-release
Obsolete in hirsute-release
Deleted in hirsute-proposed (Reason: moved to Release) 
msxpertsuite (5.8.9-1) unstable; urgency=low

  * Fix filenames of the STIX2 fonts used for the user manual. The bug was
    reported by Lucas Nussbaum <email address hidden>. Thanks to Juhani Numminen
    <email address hidden> and Dennis Filder <email address hidden> for
    suggesting fixes (Closes: #982718).

  * Standards-Version: 4.5.1: no changes required.

 -- Filippo Rusconi <email address hidden>  Sat, 20 Feb 2021 16:18:00 +0100
Superseded in hirsute-release
Deleted in hirsute-proposed (Reason: moved to Release) 
msxpertsuite (5.8.7-1build1) hirsute; urgency=medium

  * No-change rebuild for isospec abi changes.

 -- Matthias Klose <email address hidden>  Sun, 13 Dec 2020 11:06:40 +0100
Superseded in hirsute-release
Obsolete in groovy-release
Deleted in groovy-proposed (Reason: moved to Release) 
msxpertsuite (5.8.7-1) unstable; urgency=low

  * New upstream release.

  * Fixes to the icons handling.
  * Fix mis-spelling of workd in d/control (thanks to Jakub Wilk
    <email address hidden> for the report).
  * Standards-Version: 4.5.0.
  * Add new protein 1 letter code definition with the atomic definitions
    taken from the libisospec++ tables.
  * debhelper-compat (=12) (remove d/compat).

 -- Filippo Rusconi <email address hidden>  Fri, 12 Jun 2020 12:56:02 +0200
Superseded in groovy-release
Published in focal-release
Deleted in focal-proposed (Reason: moved to Release) 
msxpertsuite (5.8.6-2build1) focal; urgency=medium

  * No-change rebuild for libgcc-s1 package name change.

 -- Matthias Klose <email address hidden>  Tue, 24 Mar 2020 15:08:05 +0100
Superseded in focal-release
Obsolete in eoan-release
Obsolete in disco-release
Deleted in disco-proposed (Reason: moved to release) 
msxpertsuite (5.8.6-2) unstable; urgency=low

  * d/control: +Homepage: http://www.msxpertsuite.org/ (not https).

  * Fix the license mismatch output by lintian (appstream.xml file vs
    d/copyright).

 -- Filippo Rusconi <email address hidden>  Wed, 06 Mar 2019 12:40:54 +0100

Available diffs

Superseded in disco-proposed 
msxpertsuite (5.8.6-1) unstable; urgency=low

  * Reinstate partially all the conflicts/breaks/replaces statements for the
    mspxertsuite-massxpert binary package. This ensures that upgrade of
    massxpert from stable's version to this version does not stumble upon
    overwriting blocks. Thanks to Andreas Beckmann
    <email address hidden> for reporting the piuparts log (Closes: #922287).

  * Took advantage to update the
    minexpert/org.msxpertsuite.minexpert.appdata.xml file (which justifies new
    upstream version.

 -- Filippo Rusconi <email address hidden>  Thu, 14 Feb 2019 17:08:52 +0100

Available diffs

Superseded in disco-proposed 
msxpertsuite (5.8.5-1) unstable; urgency=low

  * appdata fixes to the gpl version number (lintian warning).

  * d/rules: fix problem with the path to the .fop.xconf file not being found.
    This is a missing fix with respect to the other d/rules files that was
    working.

 -- Filippo Rusconi <email address hidden>  Tue, 12 Feb 2019 08:59:24 +0100

Available diffs

Superseded in disco-proposed 
msxpertsuite (5.8.4-1) unstable; urgency=low

  * Make the user manuals and install them under the control of CMake.

  * Convert d/rules to the debhelper mini format.

 -- Filippo Rusconi <email address hidden>  Mon, 11 Feb 2019 13:46:36 +0100

Available diffs

Superseded in disco-proposed 
msxpertsuite (5.8.3-1) unstable; urgency=low

  * Make sure CMake is called during dpkg-buildpackage -A (Closes: #921727).
    Thanks to Santiago Vila <email address hidden> for the report.

 -- Filippo Rusconi <email address hidden>  Fri, 08 Feb 2019 17:02:20 +0100

Available diffs

Superseded in disco-proposed 
msxpertsuite (5.8.2-1) unstable; urgency=low

  * New version with the daps dependency for the user manuals build.

 -- Filippo Rusconi <email address hidden>  Wed, 06 Feb 2019 19:04:58 +0100

Available diffs

Superseded in disco-release
Deleted in disco-proposed (Reason: moved to release) 
msxpertsuite (5.7.3.1-2) unstable; urgency=low

  * Fix libpwiz dependency version.
  * Remove unused dependency.
  * Standards-Version: 4.3.0 (no changes required).

 -- Filippo Rusconi <email address hidden>  Sat, 02 Feb 2019 02:26:08 +0100
Superseded in disco-proposed 
msxpertsuite (5.7.3.1-1) unstable; urgency=low

  * New version that makes use of the new /usr/include/proteowizard header
    directory that makes is easier to resolve the various subdirs. The
    previous hierarchy led to having <pwiz/pwiz...> which is not intuitive.

 -- Filippo Rusconi <email address hidden>  Sat, 02 Feb 2019 00:32:22 +0100

Available diffs

Superseded in disco-release
Deleted in disco-proposed (Reason: moved to release) 
msxpertsuite (5.7.3-1) unstable; urgency=low

  * Fixes upstream.

 -- Filippo Rusconi <email address hidden>  Wed, 16 Jan 2019 19:14:57 +0100

Available diffs

Superseded in disco-release
Deleted in disco-proposed (Reason: moved to release) 
msxpertsuite (5.7.2-1) unstable; urgency=low

  * Bug fixes in upstream massXpert.

 -- Filippo Rusconi <email address hidden>  Tue, 15 Jan 2019 22:05:46 +0100

Available diffs

Superseded in disco-release
Deleted in disco-proposed (Reason: moved to release) 
msxpertsuite (5.7.1-1) unstable; urgency=low

  * Small fixes in upstream.

  * Ship the data and doc (all-architecture) material in dedicated packages.

 -- Filippo Rusconi <email address hidden>  Fri, 21 Dec 2018 17:07:40 +0100

Available diffs

Superseded in disco-release
Deleted in disco-proposed (Reason: moved to release) 
msxpertsuite (5.6.1-1) unstable; urgency=low

  * New upstream release to cope with the libpwiz API change in the
    BinaryDataEncoder class, with the creation of the new BinaryData class to
    handle what used to be std::vector<double>.

 -- Filippo Rusconi <email address hidden>  Tue, 11 Dec 2018 17:42:41 +0100

Available diffs

Superseded in disco-release
Deleted in disco-proposed (Reason: moved to release) 
msxpertsuite (5.6.0-1) unstable; urgency=low

  * New upstream version:
 
    - Improve the interpreation of script lines;
    - Start implementation of a JavaScript script file to calibrate the Synapt
      data.
    - Improve the mass data integration in script mode;
    - When creating mass spectrum from clipboard, automatically trigger the
      computation of the actual mass spectrum plot without requiring a TIC 
      to mass spectrum computation.
    - Provide Savitzky-Golay filtering to any trace in any plot widget with
      undo/redo feature.

 -- Filippo Rusconi <email address hidden>  Sat, 13 Oct 2018 11:59:05 +0200

Available diffs

Superseded in disco-release
Obsolete in cosmic-release
Deleted in cosmic-proposed (Reason: moved to release) 
msxpertsuite (5.3.3-1) unstable; urgency=low

  * New upstream release.

  * Fix the "ignore error" directive in the user manual documentation Makefile
    that drives the LaTeX-based compilation of the documents (Closes: #901154);

  * Revert C++14 to C++11 to maintain compatibility with OSes that are less
    advanced with gcc;

  * Fix problem with loading Agilent data because of drift bin count variable.

 -- Filippo Rusconi <email address hidden>  Wed, 20 Jun 2018 17:42:48 +0200

Available diffs

Superseded in cosmic-release
Deleted in cosmic-proposed (Reason: moved to release) 
msxpertsuite (5.3.2-1) unstable; urgency=low

  * New upstream release.

  * General revision of the JavaScript reference documentation. Fixes and
    additions.

  * Small fixes.

 -- Filippo Rusconi <email address hidden>  Mon, 04 Jun 2018 22:33:37 +0200

Available diffs

Superseded in cosmic-release
Deleted in cosmic-proposed (Reason: moved to release) 
msxpertsuite (5.3.0-1) unstable; urgency=low

  * New upstream release.

  * Ensure that the QScript JavaScript environment works flawlessly even in
    the context of QThread-based code. Written JS-specific functions for
    where QThread would be a problem.

 -- Filippo Rusconi <email address hidden>  Thu, 31 May 2018 14:10:03 +0200

Available diffs

Superseded in cosmic-release
Deleted in cosmic-proposed (Reason: moved to release) 
msxpertsuite (5.2.1-1) unstable; urgency=low

  * New upstream release.

  * Fix integration help string that had bad keyboard key information to
    integrate to XIC chromatogram.

 -- Filippo Rusconi <email address hidden>  Tue, 29 May 2018 14:41:25 +0200

Available diffs

Superseded in cosmic-release
Deleted in cosmic-proposed (Reason: moved to release) 
msxpertsuite (5.2.0-1) unstable; urgency=low

  * New upstream release.

  * Fix bug with the mzML to SQLite3 db conversion due to not allocation
    QCoreApplication before running the console-based conversion (MS Windows
    only bug, apparently).

 -- Filippo Rusconi <email address hidden>  Fri, 25 May 2018 12:50:59 +0200

Available diffs

Superseded in cosmic-release
Deleted in cosmic-proposed (Reason: moved to release) 
msxpertsuite (5.1.1-1) unstable; urgency=low

  * New upstream release.

  * Fix bug with the failing mass spectrometric data file slicer.

  * Fix bug with the deconvolution of the isotopic cluster.

 -- Filippo Rusconi <email address hidden>  Thu, 24 May 2018 18:40:18 +0200

Available diffs

Superseded in cosmic-release
Deleted in cosmic-proposed (Reason: moved to release) 
msxpertsuite (5.1.0-1) unstable; urgency=low

  * New upstream release.

  * Ensure the graphical user interface remains always snappy even when the
    computations are blocking by transferring all the integration tasks to
    QThread-based threads.

  * Improved the feedback to the user when any integration is performed, be
    that integration to a TIC intensity value, a TIC chromatogram, a mass
    spectrum or a drift spectrum.

  * Greatly improve the feedback to the user when integrations are performed
    to a MassSpectrum.

  * Fix bug crashing mineXpert upon streamed mode integrations.

  * Ensure that no binning is performed when a single spectrum is loaded from
    file.

  * Make sure the user sees a help message when loading files. The message
    instructs the user about the way to configure the integrations to a mass
    spectrum.

  * Updated all the tests.

 -- Filippo Rusconi <email address hidden>  Wed, 23 May 2018 22:15:00 +0200

Available diffs

Superseded in cosmic-release
Deleted in cosmic-proposed (Reason: moved to release) 
msxpertsuite (5.0.2-1) unstable; urgency=low

  * New upstream release.

  * Fix bug with failing charge state envelope-based mass spectral
    deconvolution.

 -- Filippo Rusconi <email address hidden>  Tue, 24 Apr 2018 21:14:59 +0200

Available diffs

Superseded in cosmic-release
Published in bionic-release
Deleted in bionic-proposed (Reason: moved to release) 
msxpertsuite (4.1.0-1) unstable; urgency=low

  * New upstream release with a greatly reworked build system to cope with
    the MacOSX build system.

  * Reworked the configuration system to apply to massXpert and mineXpert
    independently (config.h file generated in the respective build
    directories).

  * Fix problem with the VERSION that would adopt various values depending on
    the config.h file that is read (crufty config.h file residing in top
    source dir).

  * Many fixes in the maintainer-scripts/ directory.

  * Standards-Version: 4.1.3: no changes required.

 -- Filippo Rusconi <email address hidden>  Tue, 02 Jan 2018 18:52:11 +0100

Available diffs

Superseded in bionic-release
Deleted in bionic-proposed (Reason: moved to release) 
msxpertsuite (4.0.0-1) unstable; urgency=low

  * New upstream release.

 -- Filippo Rusconi <email address hidden>  Thu, 14 Dec 2017 20:19:26 +0100

Available diffs

Superseded in bionic-release
Deleted in bionic-proposed (Reason: moved to release) 
msxpertsuite (3.8.1-2) unstable; urgency=low

  * Forcing new debian package version to allow the package into Debian. No
    changes.

 -- Filippo Rusconi <email address hidden>  Sat, 02 Dec 2017 08:30:55 +0100

Available diffs

Superseded in bionic-proposed 
msxpertsuite (3.7.0-1) unstable; urgency=low

  * New upstream package:

      - small bug fixes;
      - unit testing code using the catch testing software;
      - regression testing using the scripting framework already coded into
        mineXpert.

 -- Filippo Rusconi <email address hidden>  Fri, 13 Oct 2017 11:16:18 +0200
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