https://launchpad.net/ubuntu/+source/mummer/3.23+dfsg-7/+build/20731121 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-029 4.15.0-128-generic #131-Ubuntu SMP Wed Dec 9 06:54:14 UTC 2020 ppc64le Buildd toolchain package versions: launchpad-buildd_193~468~ubuntu18.04.1 python3-lpbuildd_193~468~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 26 Dec 23:41:59 ntpdate[1945]: adjust time server 10.211.37.1 offset 0.002277 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=ppc64el PACKAGEBUILD-20731121 --image-type chroot /home/buildd/filecache-default/562b8b0d733db483afe9600af35c69ac54075a74 Creating target for build PACKAGEBUILD-20731121 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=ppc64el PACKAGEBUILD-20731121 Starting target for build PACKAGEBUILD-20731121 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=ppc64el PACKAGEBUILD-20731121 'deb http://ftpmaster.internal/ubuntu hirsute main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-security main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-updates main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-20731121 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=ppc64el PACKAGEBUILD-20731121 Updating target for build PACKAGEBUILD-20731121 Get:1 http://ftpmaster.internal/ubuntu hirsute InRelease [269 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main ppc64el Packages [1346 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el Packages [13.0 MB] Get:8 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5386 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el Packages [138 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main Translation-en [57.3 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/universe ppc64el Packages [697 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/universe Translation-en [336 kB] Fetched 22.0 MB in 10s (2224 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libisl23 libperl5.32 libxxhash0 perl-modules-5.32 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-powerpc64le-linux-gnu bsdutils coreutils cpp-10 dash dpkg dpkg-dev fakeroot g++-10 gcc-10 gcc-10-base grep init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libgcc-10-dev libgcc-s1 libgcrypt20 libgomp1 libgssapi-krb5-2 libidn2-0 libip4tc2 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 liblsan0 liblz4-1 libmount1 libmpc3 libncurses6 libncursesw6 libnpth0 libp11-kit0 libpcre2-8-0 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libssl1.1 libstdc++-10-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login mount ncurses-base ncurses-bin openssl passwd perl perl-base readline-common systemd systemd-sysv systemd-timesyncd sysvinit-utils tar tzdata util-linux 105 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 80.3 MB of archives. After this operation, 56.2 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcrypt-dev ppc64el 1:4.4.17-1ubuntu1 [131 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libc6-dev ppc64el 2.32-0ubuntu6 [2132 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libc-dev-bin ppc64el 2.32-0ubuntu6 [31.5 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcrypt1 ppc64el 1:4.4.17-1ubuntu1 [99.8 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el linux-libc-dev ppc64el 5.8.0-34.37+21.04.1 [1134 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libtirpc-common all 1.2.6-3 [7444 B] Get:7 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libk5crypto3 ppc64el 1.17-10ubuntu1 [105 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libgssapi-krb5-2 ppc64el 1.17-10ubuntu1 [135 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libkrb5-3 ppc64el 1.17-10ubuntu1 [375 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libkrb5support0 ppc64el 1.17-10ubuntu1 [34.8 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libssl1.1 ppc64el 1.1.1f-1ubuntu5 [1363 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libtirpc-dev ppc64el 1.2.6-3 [208 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libtirpc3 ppc64el 1.2.6-3 [89.2 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libisl23 ppc64el 0.23-1 [713 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libcc1-0 ppc64el 10.2.1-2ubuntu3 [42.0 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libctf0 ppc64el 2.35.50.20201218-1ubuntu3 [85.5 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libctf-nobfd0 ppc64el 2.35.50.20201218-1ubuntu3 [85.5 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.35.50.20201218-1ubuntu3 [1838 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libbinutils ppc64el 2.35.50.20201218-1ubuntu3 [534 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el binutils-common ppc64el 2.35.50.20201218-1ubuntu3 [216 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el binutils ppc64el 2.35.50.20201218-1ubuntu3 [3380 B] Get:22 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el gcc-10-base ppc64el 10.2.1-2ubuntu3 [19.4 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libgcc-s1 ppc64el 10.2.1-2ubuntu3 [30.1 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libgomp1 ppc64el 10.2.1-2ubuntu3 [109 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libitm1 ppc64el 10.2.1-2ubuntu3 [28.5 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libatomic1 ppc64el 10.2.1-2ubuntu3 [9984 B] Get:27 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libasan6 ppc64el 10.2.1-2ubuntu3 [2107 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el liblsan0 ppc64el 10.2.1-2ubuntu3 [848 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libtsan0 ppc64el 10.2.1-2ubuntu3 [2031 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libubsan1 ppc64el 10.2.1-2ubuntu3 [800 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libquadmath0 ppc64el 10.2.1-2ubuntu3 [149 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el g++-10 ppc64el 10.2.1-2ubuntu3 [8185 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libstdc++-10-dev ppc64el 10.2.1-2ubuntu3 [1793 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libgcc-10-dev ppc64el 10.2.1-2ubuntu3 [1246 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el gcc-10 ppc64el 10.2.1-2ubuntu3 [14.5 MB] Get:36 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el cpp-10 ppc64el 10.2.1-2ubuntu3 [7072 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libstdc++6 ppc64el 10.2.1-2ubuntu3 [540 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libmpc3 ppc64el 1.2.0-1 [47.1 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libzstd1 ppc64el 1.4.8+dfsg-1 [327 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libc6 ppc64el 2.32-0ubuntu6 [2680 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main ppc64el base-files ppc64el 11ubuntu16 [60.7 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute/main ppc64el bash ppc64el 5.1-1ubuntu1 [748 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main ppc64el bsdutils ppc64el 1:2.36.1-1ubuntu2 [91.9 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main ppc64el coreutils ppc64el 8.32-4ubuntu2 [1411 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute/main ppc64el tar ppc64el 1.32+dfsg-1 [317 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main ppc64el dpkg ppc64el 1.20.5ubuntu3 [1199 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main ppc64el dash ppc64el 0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1 [101 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main ppc64el grep ppc64el 3.6-1 [160 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main ppc64el login ppc64el 1:4.8.1-1ubuntu7 [223 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libncurses6 ppc64el 6.2+20201114-1 [122 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libncursesw6 ppc64el 6.2+20201114-1 [153 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libtinfo6 ppc64el 6.2+20201114-1 [104 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main ppc64el ncurses-bin ppc64el 6.2+20201114-1 [180 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el perl-modules-5.32 all 5.32.0-6 [2754 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libperl5.32 ppc64el 5.32.0-6 [4020 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el perl ppc64el 5.32.0-6 [225 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el perl-base ppc64el 5.32.0-6 [1547 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main ppc64el util-linux ppc64el 2.36.1-1ubuntu2 [1118 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libdebconfclient0 ppc64el 0.255ubuntu1 [6148 B] Get:60 http://ftpmaster.internal/ubuntu hirsute/main ppc64el base-passwd ppc64el 3.5.48 [49.6 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el init-system-helpers all 1.60 [37.8 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libc-bin ppc64el 2.32-0ubuntu6 [647 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main ppc64el ncurses-base all 6.2+20201114-1 [18.5 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main ppc64el sysvinit-utils ppc64el 2.96-5ubuntu1 [22.8 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libxxhash0 ppc64el 0.8.0-1 [30.5 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libgcrypt20 ppc64el 1.8.7-2ubuntu1 [444 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main ppc64el liblz4-1 ppc64el 1.9.3-0ubuntu1 [70.0 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el systemd-sysv ppc64el 247.1-4ubuntu1 [10.3 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libaudit-common all 1:2.8.5-3ubuntu3 [4048 B] Get:70 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcap-ng0 ppc64el 0.7.9-2.2build1 [11.7 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libaudit1 ppc64el 1:2.8.5-3ubuntu3 [42.5 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpcre2-8-0 ppc64el 10.35-2ubuntu1 [204 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libselinux1 ppc64el 3.1-2build2 [81.5 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsemanage-common all 3.1-1build2 [10.0 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsemanage1 ppc64el 3.1-1build2 [97.0 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/main ppc64el passwd ppc64el 1:4.8.1-1ubuntu7 [804 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el adduser all 3.118ubuntu4 [163 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el systemd-timesyncd ppc64el 247.1-4ubuntu1 [28.6 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libapparmor1 ppc64el 3.0.0-0ubuntu5 [39.6 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libblkid1 ppc64el 2.36.1-1ubuntu2 [151 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libudev1 ppc64el 247.1-4ubuntu1 [82.5 kB] Get:82 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.167-1ubuntu4 [157 kB] Get:83 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libuuid1 ppc64el 2.36.1-1ubuntu2 [23.1 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcryptsetup12 ppc64el 2:2.3.4-1ubuntu1 [228 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libip4tc2 ppc64el 1.8.5-3ubuntu4 [22.0 kB] Get:86 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libseccomp2 ppc64el 2.4.3-1ubuntu6 [47.7 kB] Get:87 http://ftpmaster.internal/ubuntu hirsute/main ppc64el mount ppc64el 2.36.1-1ubuntu2 [128 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el systemd ppc64el 247.1-4ubuntu1 [4205 kB] Get:89 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libsystemd0 ppc64el 247.1-4ubuntu1 [318 kB] Get:90 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libapt-pkg6.0 ppc64el 2.1.14 [928 kB] Get:91 http://ftpmaster.internal/ubuntu hirsute/main ppc64el apt ppc64el 2.1.14 [1329 kB] Get:92 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el init ppc64el 1.60 [6040 B] Get:93 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libacl1 ppc64el 2.2.53-9 [19.1 kB] Get:94 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libattr1 ppc64el 1:2.4.48-6 [13.8 kB] Get:95 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libmount1 ppc64el 2.36.1-1ubuntu2 [166 kB] Get:96 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsmartcols1 ppc64el 2.36.1-1ubuntu2 [107 kB] Get:97 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libidn2-0 ppc64el 2.3.0-4 [55.3 kB] Get:98 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libp11-kit0 ppc64el 0.23.22-1 [203 kB] Get:99 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcap2 ppc64el 1:2.44-1 [19.8 kB] Get:100 http://ftpmaster.internal/ubuntu hirsute/main ppc64el readline-common all 8.1-1 [54.1 kB] Get:101 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libreadline8 ppc64el 8.1-1 [151 kB] Get:102 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsqlite3-0 ppc64el 3.34.0-1 [628 kB] Get:103 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el openssl ppc64el 1.1.1f-1ubuntu5 [621 kB] Get:104 http://ftpmaster.internal/ubuntu hirsute/main ppc64el tzdata all 2020d-1ubuntu1 [293 kB] Get:105 http://ftpmaster.internal/ubuntu hirsute/main ppc64el dpkg-dev all 1.20.5ubuntu3 [758 kB] Get:106 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libdpkg-perl all 1.20.5ubuntu3 [232 kB] Get:107 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libfakeroot ppc64el 1.25.3-1.1 [28.6 kB] Get:108 http://ftpmaster.internal/ubuntu hirsute/main ppc64el fakeroot ppc64el 1.25.3-1.1 [66.4 kB] Get:109 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libnpth0 ppc64el 1.6-3 [8640 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 80.3 MB in 11s (7410 kB/s) (Reading database ... 12922 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.17-1ubuntu1_ppc64el.deb ... Unpacking libcrypt-dev:ppc64el (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Preparing to unpack .../libc6-dev_2.32-0ubuntu6_ppc64el.deb ... Unpacking libc6-dev:ppc64el (2.32-0ubuntu6) over (2.32-0ubuntu3) ... Preparing to unpack .../libc-dev-bin_2.32-0ubuntu6_ppc64el.deb ... Unpacking libc-dev-bin (2.32-0ubuntu6) over (2.32-0ubuntu3) ... Preparing to unpack .../libcrypt1_1%3a4.4.17-1ubuntu1_ppc64el.deb ... Unpacking libcrypt1:ppc64el (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Setting up libcrypt1:ppc64el (1:4.4.17-1ubuntu1) ... (Reading database ... 12921 files and directories currently installed.) Preparing to unpack .../00-linux-libc-dev_5.8.0-34.37+21.04.1_ppc64el.deb ... Unpacking linux-libc-dev:ppc64el (5.8.0-34.37+21.04.1) over (5.8.0-25.26) ... Preparing to unpack .../01-libtirpc-common_1.2.6-3_all.deb ... Unpacking libtirpc-common (1.2.6-3) over (1.2.6-1build1) ... 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Preparing to unpack .../07-libdpkg-perl_1.20.5ubuntu3_all.deb ... Unpacking libdpkg-perl (1.20.5ubuntu3) over (1.20.5ubuntu2) ... Preparing to unpack .../08-libfakeroot_1.25.3-1.1_ppc64el.deb ... Unpacking libfakeroot:ppc64el (1.25.3-1.1) over (1.25.2-1) ... Preparing to unpack .../09-fakeroot_1.25.3-1.1_ppc64el.deb ... Unpacking fakeroot (1.25.3-1.1) over (1.25.2-1) ... Preparing to unpack .../10-libnpth0_1.6-3_ppc64el.deb ... Unpacking libnpth0:ppc64el (1.6-3) over (1.6-2) ... Setting up init (1.60) ... Setting up libtirpc-common (1.2.6-3) ... Setting up perl-modules-5.32 (5.32.0-6) ... Setting up libsqlite3-0:ppc64el (3.34.0-1) ... Setting up binutils-common:ppc64el (2.35.50.20201218-1ubuntu3) ... Setting up linux-libc-dev:ppc64el (5.8.0-34.37+21.04.1) ... Setting up libctf-nobfd0:ppc64el (2.35.50.20201218-1ubuntu3) ... Setting up libnpth0:ppc64el (1.6-3) ... Setting up libgomp1:ppc64el (10.2.1-2ubuntu3) ... Setting up libcap2:ppc64el (1:2.44-1) ... Setting up libfakeroot:ppc64el (1.25.3-1.1) ... Setting up libasan6:ppc64el (10.2.1-2ubuntu3) ... Setting up libkrb5support0:ppc64el (1.17-10ubuntu1) ... Setting up tzdata (2020d-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Dec 26 23:42:46 UTC 2020. Universal Time is now: Sat Dec 26 23:42:46 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.25.3-1.1) ... Setting up libncurses6:ppc64el (6.2+20201114-1) ... Setting up libquadmath0:ppc64el (10.2.1-2ubuntu3) ... Setting up libmpc3:ppc64el (1.2.0-1) ... Setting up libatomic1:ppc64el (10.2.1-2ubuntu3) ... Setting up libncursesw6:ppc64el (6.2+20201114-1) ... Setting up libk5crypto3:ppc64el (1.17-10ubuntu1) ... Setting up libperl5.32:ppc64el (5.32.0-6) ... Setting up libubsan1:ppc64el (10.2.1-2ubuntu3) ... Setting up libcrypt-dev:ppc64el (1:4.4.17-1ubuntu1) ... Setting up libkrb5-3:ppc64el (1.17-10ubuntu1) ... Setting up libbinutils:ppc64el (2.35.50.20201218-1ubuntu3) ... Setting up libisl23:ppc64el (0.23-1) ... Setting up libc-dev-bin (2.32-0ubuntu6) ... Setting up openssl (1.1.1f-1ubuntu5) ... Setting up readline-common (8.1-1) ... Setting up libcc1-0:ppc64el (10.2.1-2ubuntu3) ... Setting up liblsan0:ppc64el (10.2.1-2ubuntu3) ... Setting up cpp-10 (10.2.1-2ubuntu3) ... Setting up libitm1:ppc64el (10.2.1-2ubuntu3) ... Setting up libtsan0:ppc64el (10.2.1-2ubuntu3) ... Setting up libctf0:ppc64el (2.35.50.20201218-1ubuntu3) ... Setting up libgcc-10-dev:ppc64el (10.2.1-2ubuntu3) ... Setting up libreadline8:ppc64el (8.1-1) ... Setting up perl (5.32.0-6) ... Setting up libgssapi-krb5-2:ppc64el (1.17-10ubuntu1) ... Setting up libdpkg-perl (1.20.5ubuntu3) ... Setting up binutils-powerpc64le-linux-gnu (2.35.50.20201218-1ubuntu3) ... Setting up libtirpc3:ppc64el (1.2.6-3) ... Setting up binutils (2.35.50.20201218-1ubuntu3) ... Setting up dpkg-dev (1.20.5ubuntu3) ... Setting up libtirpc-dev:ppc64el (1.2.6-3) ... Setting up gcc-10 (10.2.1-2ubuntu3) ... Setting up libc6-dev:ppc64el (2.32-0ubuntu6) ... Setting up libstdc++-10-dev:ppc64el (10.2.1-2ubuntu3) ... Setting up g++-10 (10.2.1-2ubuntu3) ... Processing triggers for libc-bin (2.32-0ubuntu6) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20731121 ppc64el hirsute-proposed -c chroot:build-PACKAGEBUILD-20731121 --arch=ppc64el --dist=hirsute-proposed --nolog mummer_3.23+dfsg-7.dsc Initiating build PACKAGEBUILD-20731121 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-128-generic #131-Ubuntu SMP Wed Dec 9 06:54:14 UTC 2020 ppc64le sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-ppc64el-029.buildd +==============================================================================+ | mummer 3.23+dfsg-7 (ppc64el) Sat, 26 Dec 2020 23:42:47 +0000 | +==============================================================================+ Package: mummer Version: 3.23+dfsg-7 Source Version: 3.23+dfsg-7 Distribution: hirsute-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20731121/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- mummer_3.23+dfsg-7.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/mummer-UwcF8E/mummer-3.23+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/mummer-UwcF8E' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-CrPu9G/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-CrPu9G/apt_archive ./ InRelease Get:2 copy:/<>/resolver-CrPu9G/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-CrPu9G/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-CrPu9G/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-CrPu9G/apt_archive ./ Packages [434 B] Fetched 1740 B in 0s (95.8 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-CrPu9G/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14869 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), texlive-latex-base, texlive-latex-recommended, texlive-fonts-recommended Filtered Build-Depends: debhelper-compat (= 13), texlive-latex-base, texlive-latex-recommended, texlive-fonts-recommended dpkg-deb: building package 'sbuild-build-depends-mummer-dummy' in '/<>/resolver-CrPu9G/apt_archive/sbuild-build-depends-mummer-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-mummer-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-CrPu9G/apt_archive ./ InRelease Get:2 copy:/<>/resolver-CrPu9G/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-CrPu9G/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-CrPu9G/apt_archive ./ Sources [520 B] Get:5 copy:/<>/resolver-CrPu9G/apt_archive ./ Packages [603 B] Fetched 2086 B in 0s (103 kB/s) Reading package lists... Reading package lists... Install mummer build dependencies (apt-based resolver) ------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-lmodern gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1 libbsd0 libcairo2 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libglib2.0-0 libgraphite2-3 libharfbuzz0b libice6 libicu67 libkpathsea6 libmagic-mgc libmagic1 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libptexenc1 libsigsegv2 libsm6 libsub-override-perl libsynctex2 libteckit0 libtexlua53 libtool libuchardet0 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libzzip-0-13 m4 man-db po-debconf t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-recommended ucf x11-common xdg-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-fonts-recommended-doc texlive-latex-base-doc texlive-latex-recommended-doc texlive-luatex texlive-pstricks Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl lmodern dvisvgm tex-gyre tipa libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-lmodern gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1 libbsd0 libcairo2 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libglib2.0-0 libgraphite2-3 libharfbuzz0b libice6 libicu67 libkpathsea6 libmagic-mgc libmagic1 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libptexenc1 libsigsegv2 libsm6 libsub-override-perl libsynctex2 libteckit0 libtexlua53 libtool libuchardet0 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libzzip-0-13 m4 man-db po-debconf sbuild-build-depends-mummer-dummy t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-recommended ucf x11-common xdg-utils 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 79.8 MB of archives. After this operation, 261 MB of additional disk space will be used. Get:1 copy:/<>/resolver-CrPu9G/apt_archive ./ sbuild-build-depends-mummer-dummy 0.invalid.0 [888 B] Get:2 http://ftpmaster.internal/ubuntu hirsute/main ppc64el bsdextrautils ppc64el 2.36.1-1ubuntu2 [83.5 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libuchardet0 ppc64el 0.0.7-1 [71.0 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main ppc64el groff-base ppc64el 1.22.4-5 [922 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpipeline1 ppc64el 1.5.3-1 [29.6 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main ppc64el man-db ppc64el 2.9.3-2 [1148 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main ppc64el ucf all 3.0043 [56.1 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el tex-common all 6.15 [33.0 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libmagic-mgc ppc64el 1:5.39-3 [228 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libmagic1 ppc64el 1:5.39-3 [93.4 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute/main ppc64el file ppc64el 1:5.39-3 [24.7 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libbsd0 ppc64el 0.10.0-1 [55.1 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libelf1 ppc64el 0.182-1 [52.3 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libexpat1 ppc64el 2.2.10-1 [77.6 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libglib2.0-0 ppc64el 2.66.4-1 [1408 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libicu67 ppc64el 67.1-5 [8813 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libxml2 ppc64el 2.9.10+dfsg-6.3build1 [656 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el gettext-base ppc64el 0.21-3 [44.7 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libxau6 ppc64el 1:1.0.9-0ubuntu1 [7876 B] Get:20 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libxdmcp6 ppc64el 1:1.1.3-0ubuntu1 [11.8 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libxcb1 ppc64el 1.14-2.1 [50.4 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libx11-data all 2:1.6.12-1 [113 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libx11-6 ppc64el 2:1.6.12-1 [638 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libxext6 ppc64el 2:1.3.4-0ubuntu1 [35.1 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libsigsegv2 ppc64el 2.12-3 [14.5 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute/main ppc64el m4 ppc64el 1.4.18-4 [210 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute/main ppc64el autoconf all 2.69-14 [293 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute/main ppc64el autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute/main ppc64el automake all 1:1.16.3-1ubuntu1 [552 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el autopoint all 0.21-3 [423 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libtool all 2.4.6-14 [161 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main ppc64el dh-autoreconf all 19 [16.1 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libdebhelper-perl all 13.3ubuntu4 [63.8 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsub-override-perl all 0.09-2 [9532 B] Get:36 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libfile-stripnondeterminism-perl all 1.9.0-1 [17.2 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute/main ppc64el dh-strip-nondeterminism all 1.9.0-1 [5192 B] Get:38 http://ftpmaster.internal/ubuntu hirsute/main ppc64el dwz ppc64el 0.13+20201015-2 [156 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el gettext ppc64el 0.21-3 [897 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute/main ppc64el intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main ppc64el po-debconf all 1.0.21 [233 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el debhelper all 13.3ubuntu4 [881 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main ppc64el fonts-dejavu-core all 2.37-2 [1041 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main ppc64el fontconfig-config all 2.13.1-4.2ubuntu2 [28.6 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el fonts-lmodern all 2.004.5-6.1 [4532 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libbrotli1 ppc64el 1.0.9-2build2 [304 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libfreetype6 ppc64el 2.10.4+dfsg-1 [425 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libfontconfig1 ppc64el 2.13.1-4.2ubuntu2 [150 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpixman-1-0 ppc64el 0.40.0-1 [268 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libxcb-render0 ppc64el 1.14-2.1 [15.7 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute-proposed/main ppc64el libxcb-shm0 ppc64el 1.14-2.1 [5892 B] Get:52 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libxrender1 ppc64el 1:0.9.10-1 [17.6 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libcairo2 ppc64el 1.16.0-4ubuntu1 [692 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libgraphite2-3 ppc64el 1.3.14-1 [73.3 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libharfbuzz0b ppc64el 2.6.7-1ubuntu1 [431 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main ppc64el x11-common all 1:7.7+19ubuntu15 [22.2 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libice6 ppc64el 2:1.0.10-1 [44.9 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libkpathsea6 ppc64el 2020.20200327.54578-5 [62.8 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpaper1 ppc64el 1.1.28 [13.2 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libpaper-utils ppc64el 1.1.28 [8688 B] Get:61 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libptexenc1 ppc64el 2020.20200327.54578-5 [37.2 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsm6 ppc64el 2:1.2.3-1 [17.6 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libsynctex2 ppc64el 2020.20200327.54578-5 [60.6 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libteckit0 ppc64el 2.5.8+ds2-5ubuntu2 [299 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libtexlua53 ppc64el 2020.20200327.54578-5 [128 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libxt6 ppc64el 1:1.2.0-1 [174 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libxmu6 ppc64el 2:1.1.3-0ubuntu1 [50.7 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libxpm4 ppc64el 1:3.5.12-1 [35.9 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libxaw7 ppc64el 2:1.0.13-1.1 [196 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute/main ppc64el libxi6 ppc64el 2:1.7.10-1 [32.2 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el libzzip-0-13 ppc64el 0.13.62-3.2ubuntu1 [29.1 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute/main ppc64el t1utils ppc64el 1.41-4 [62.0 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/universe ppc64el texlive-binaries ppc64el 2020.20200327.54578-5 [10.5 MB] Get:74 http://ftpmaster.internal/ubuntu hirsute/main ppc64el xdg-utils all 1.1.3-2ubuntu2 [61.5 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute-proposed/universe ppc64el texlive-base all 2020.20201203-2 [20.7 MB] Get:76 http://ftpmaster.internal/ubuntu hirsute-proposed/universe ppc64el texlive-fonts-recommended all 2020.20201203-2 [4972 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute-proposed/universe ppc64el texlive-latex-base all 2020.20201203-2 [1081 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute-proposed/universe ppc64el texlive-latex-recommended all 2020.20201203-2 [14.5 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 79.8 MB in 5s (17.0 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 14869 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-1ubuntu2_ppc64el.deb ... Unpacking bsdextrautils (2.36.1-1ubuntu2) ... Selecting previously unselected package libuchardet0:ppc64el. Preparing to unpack .../01-libuchardet0_0.0.7-1_ppc64el.deb ... Unpacking libuchardet0:ppc64el (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-5_ppc64el.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../03-libpipeline1_1.5.3-1_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.3-2_ppc64el.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... 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Setting up bsdextrautils (2.36.1-1ubuntu2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:ppc64el (67.1-5) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libtexlua53:ppc64el (2020.20200327.54578-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:ppc64el (2.66.4-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.3ubuntu4) ... Setting up libbrotli1:ppc64el (1.0.9-2build2) ... Setting up x11-common (1:7.7+19ubuntu15) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libmagic1:ppc64el (1:5.39-3) ... Setting up gettext-base (0.21-3) ... Setting up libzzip-0-13:ppc64el (0.13.62-3.2ubuntu1) ... Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libfreetype6:ppc64el (2.10.4+dfsg-1) ... Setting up libx11-data (2:1.6.12-1) ... Setting up libteckit0:ppc64el (2.5.8+ds2-5ubuntu2) ... Setting up libsigsegv2:ppc64el (2.12-3) ... Setting up t1utils (1.41-4) ... Setting up autopoint (0.21-3) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up ucf (3.0043) ... Setting up libkpathsea6:ppc64el (2020.20200327.54578-5) ... Setting up libuchardet0:ppc64el (0.0.7-1) ... Setting up fonts-lmodern (2.004.5-6.1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:ppc64el (2.6.7-1ubuntu1) ... Setting up libbsd0:ppc64el (0.10.0-1) ... Setting up libelf1:ppc64el (0.182-1) ... Setting up libxml2:ppc64el (2.9.10+dfsg-6.3build1) ... Setting up xdg-utils (1.1.3-2ubuntu2) ... Setting up libsynctex2:ppc64el (2020.20200327.54578-5) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libpaper1:ppc64el (1.1.28) ... Creating config file /etc/papersize with new version Setting up libice6:ppc64el (2:1.0.10-1) ... Setting up libxdmcp6:ppc64el (1:1.1.3-0ubuntu1) ... Setting up libxcb1:ppc64el (1.14-2.1) ... Setting up gettext (0.21-3) ... Setting up libtool (2.4.6-14) ... Setting up libxcb-render0:ppc64el (1.14-2.1) ... Setting up fontconfig-config (2.13.1-4.2ubuntu2) ... Setting up m4 (1.4.18-4) ... Setting up libxcb-shm0:ppc64el (1.14-2.1) ... Setting up libpaper-utils (1.1.28) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up tex-common (6.15) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libptexenc1:ppc64el (2020.20200327.54578-5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up dwz (0.13+20201015-2) ... Setting up groff-base (1.22.4-5) ... Setting up libx11-6:ppc64el (2:1.6.12-1) ... Setting up libfontconfig1:ppc64el (2.13.1-4.2ubuntu2) ... Setting up libsm6:ppc64el (2:1.2.3-1) ... Setting up automake (1:1.16.3-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxpm4:ppc64el (1:3.5.12-1) ... Setting up libxrender1:ppc64el (1:0.9.10-1) ... Setting up po-debconf (1.0.21) ... Setting up libxext6:ppc64el (2:1.3.4-0ubuntu1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libcairo2:ppc64el (1.16.0-4ubuntu1) ... Setting up libxt6:ppc64el (1:1.2.0-1) ... Setting up libxmu6:ppc64el (2:1.1.3-0ubuntu1) ... Setting up libxi6:ppc64el (2:1.7.10-1) ... Setting up libxaw7:ppc64el (2:1.0.13-1.1) ... Setting up texlive-binaries (2020.20200327.54578-5) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2020.20201203-2) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up texlive-latex-base (2020.20201203-2) ... Setting up texlive-latex-recommended (2020.20201203-2) ... Setting up texlive-fonts-recommended (2020.20201203-2) ... Setting up debhelper (13.3ubuntu4) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-mummer-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu6) ... Processing triggers for tex-common (6.15) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-128-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.35.50.20201218-1ubuntu3 dpkg-dev_1.20.5ubuntu3 g++-10_10.2.1-2ubuntu3 gcc-10_10.2.1-2ubuntu3 libc6-dev_2.32-0ubuntu6 libstdc++-10-dev_10.2.1-2ubuntu3 libstdc++6_10.2.1-2ubuntu3 linux-libc-dev_5.8.0-34.37+21.04.1 Package versions: adduser_3.118ubuntu4 advancecomp_2.1-2.1build1 apt_2.1.14 autoconf_2.69-14 automake_1:1.16.3-1ubuntu1 autopoint_0.21-3 autotools-dev_20180224.1+nmu1 base-files_11ubuntu16 base-passwd_3.5.48 bash_5.1-1ubuntu1 binutils_2.35.50.20201218-1ubuntu3 binutils-common_2.35.50.20201218-1ubuntu3 binutils-powerpc64le-linux-gnu_2.35.50.20201218-1ubuntu3 bsdextrautils_2.36.1-1ubuntu2 bsdutils_1:2.36.1-1ubuntu2 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 coreutils_8.32-4ubuntu2 cpp_4:10.2.0-1ubuntu1 cpp-10_10.2.1-2ubuntu3 dash_0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1 debconf_1.5.74 debhelper_13.3ubuntu4 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3ubuntu1 dpkg_1.20.5ubuntu3 dpkg-dev_1.20.5ubuntu3 dwz_0.13+20201015-2 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.7.0-1ubuntu2 fontconfig-config_2.13.1-4.2ubuntu2 fonts-dejavu-core_2.37-2 fonts-lmodern_2.004.5-6.1 g++_4:10.2.0-1ubuntu1 g++-10_10.2.1-2ubuntu3 gcc_4:10.2.0-1ubuntu1 gcc-10_10.2.1-2ubuntu3 gcc-10-base_10.2.1-2ubuntu3 gettext_0.21-3 gettext-base_0.21-3 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2ubuntu1 hostname_3.23 init_1.60 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-9 libapparmor1_3.0.0-0ubuntu5 libapt-pkg6.0_2.1.14 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build20.10.0 libasan6_10.2.1-2ubuntu3 libassuan0_2.5.3-7.1 libatomic1_10.2.1-2ubuntu3 libattr1_1:2.4.48-6 libaudit-common_1:2.8.5-3ubuntu3 libaudit1_1:2.8.5-3ubuntu3 libbinutils_2.35.50.20201218-1ubuntu3 libblkid1_2.36.1-1ubuntu2 libbrotli1_1.0.9-2build2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4ubuntu2 libc-bin_2.32-0ubuntu6 libc-dev-bin_2.32-0ubuntu6 libc6_2.32-0ubuntu6 libc6-dev_2.32-0ubuntu6 libcairo2_1.16.0-4ubuntu1 libcap-ng0_0.7.9-2.2build1 libcap2_1:2.44-1 libcc1-0_10.2.1-2ubuntu3 libcom-err2_1.45.6-1ubuntu1 libcrypt-dev_1:4.4.17-1ubuntu1 libcrypt1_1:4.4.17-1ubuntu1 libcryptsetup12_2:2.3.4-1ubuntu1 libctf-nobfd0_2.35.50.20201218-1ubuntu3 libctf0_2.35.50.20201218-1ubuntu3 libdb5.3_5.3.28+dfsg1-0.6ubuntu3 libdebconfclient0_0.255ubuntu1 libdebhelper-perl_13.3ubuntu4 libdevmapper1.02.1_2:1.02.167-1ubuntu4 libdpkg-perl_1.20.5ubuntu3 libelf1_0.182-1 libexpat1_2.2.10-1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.25.3-1.1 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu3 libfile-stripnondeterminism-perl_1.9.0-1 libfontconfig1_2.13.1-4.2ubuntu2 libfreetype6_2.10.4+dfsg-1 libgcc-10-dev_10.2.1-2ubuntu3 libgcc-s1_10.2.1-2ubuntu3 libgcrypt20_1.8.7-2ubuntu1 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.4-1 libgmp10_2:6.2.0+dfsg-6ubuntu1 libgnutls30_3.6.15-4ubuntu2 libgomp1_10.2.1-2ubuntu3 libgpg-error0_1.38-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.17-10ubuntu1 libharfbuzz0b_2.6.7-1ubuntu1 libhogweed6_3.6-2 libice6_2:1.0.10-1 libicu67_67.1-5 libidn2-0_2.3.0-4 libip4tc2_1.8.5-3ubuntu4 libisl22_0.22.1-1 libisl23_0.23-1 libitm1_10.2.1-2ubuntu3 libjson-c5_0.15-1 libk5crypto3_1.17-10ubuntu1 libkeyutils1_1.6.1-2ubuntu1 libkmod2_27+20200310-2ubuntu1 libkpathsea6_2020.20200327.54578-5 libkrb5-3_1.17-10ubuntu1 libkrb5support0_1.17-10ubuntu1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_10.2.1-2ubuntu3 liblz4-1_1.9.3-0ubuntu1 liblzma5_5.2.4-1ubuntu1 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-1ubuntu2 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20201114-1 libncursesw6_6.2+20201114-1 libnettle8_3.6-2 libnpth0_1.6-3 libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libnss-nis_3.1-0ubuntu4 libnss-nisplus_1.3-0ubuntu4 libp11-kit0_0.23.22-1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpaper-utils_1.1.28 libpaper1_1.1.28 libpcre2-8-0_10.35-2ubuntu1 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libperl5.32_5.32.0-6 libpipeline1_1.5.3-1 libpixman-1-0_0.40.0-1 libpng16-16_1.6.37-3 libprocps8_2:3.3.16-5ubuntu2 libptexenc1_2020.20200327.54578-5 libquadmath0_10.2.1-2ubuntu3 libreadline8_8.1-1 libseccomp2_2.4.3-1ubuntu6 libselinux1_3.1-2build2 libsemanage-common_3.1-1build2 libsemanage1_3.1-1build2 libsepol1_3.1-1 libsigsegv2_2.12-3 libsm6_2:1.2.3-1 libsmartcols1_2.36.1-1ubuntu2 libsqlite3-0_3.34.0-1 libss2_1.45.6-1ubuntu1 libssl1.1_1.1.1f-1ubuntu5 libstdc++-10-dev_10.2.1-2ubuntu3 libstdc++6_10.2.1-2ubuntu3 libsub-override-perl_0.09-2 libsynctex2_2020.20200327.54578-5 libsystemd0_247.1-4ubuntu1 libtasn1-6_4.16.0-2 libteckit0_2.5.8+ds2-5ubuntu2 libtexlua53_2020.20200327.54578-5 libtinfo6_6.2+20201114-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libtsan0_10.2.1-2ubuntu3 libubsan1_10.2.1-2ubuntu3 libuchardet0_0.0.7-1 libudev1_247.1-4ubuntu1 libunistring2_0.9.10-4 libuuid1_2.36.1-1ubuntu2 libx11-6_2:1.6.12-1 libx11-data_2:1.6.12-1 libxau6_1:1.0.9-0ubuntu1 libxaw7_2:1.0.13-1.1 libxcb-render0_1.14-2.1 libxcb-shm0_1.14-2.1 libxcb1_1.14-2.1 libxdmcp6_1:1.1.3-0ubuntu1 libxext6_2:1.3.4-0ubuntu1 libxi6_2:1.7.10-1 libxml2_2.9.10+dfsg-6.3build1 libxmu6_2:1.1.3-0ubuntu1 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxt6_1:1.2.0-1 libxxhash0_0.8.0-1 libzstd1_1.4.8+dfsg-1 libzzip-0-13_0.13.62-3.2ubuntu1 linux-libc-dev_5.8.0-34.37+21.04.1 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu7 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36.1-1ubuntu2 ncurses-base_6.2+20201114-1 ncurses-bin_6.2+20201114-1 openssl_1.1.1f-1ubuntu5 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu7 patch_2.7.6-6 perl_5.32.0-6 perl-base_5.32.0-6 perl-modules-5.30_5.30.3-4 perl-modules-5.32_5.32.0-6 pinentry-curses_1.1.0-4build1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 readline-common_8.1-1 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mummer-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.13 systemd_247.1-4ubuntu1 systemd-sysv_247.1-4ubuntu1 systemd-timesyncd_247.1-4ubuntu1 sysvinit-utils_2.96-5ubuntu1 t1utils_1.41-4 tar_1.32+dfsg-1 tex-common_6.15 texlive-base_2020.20201203-2 texlive-binaries_2020.20200327.54578-5 texlive-fonts-recommended_2020.20201203-2 texlive-latex-base_2020.20201203-2 texlive-latex-recommended_2020.20201203-2 tzdata_2020d-1ubuntu1 ubuntu-keyring_2020.06.17.1 ucf_3.0043 util-linux_2.36.1-1ubuntu2 x11-common_1:7.7+19ubuntu15 xdg-utils_1.1.3-2ubuntu2 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Dec 26 18:42:46 2020 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mummer_3.23+dfsg-7.dsc dpkg-source: info: extracting mummer in /<>/mummer-3.23+dfsg dpkg-source: info: unpacking mummer_3.23+dfsg.orig.tar.xz dpkg-source: info: unpacking mummer_3.23+dfsg-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_install_dirs.patch dpkg-source: info: applying 02at_docs_web.diff dpkg-source: info: applying enable_building_with_tetex.patch dpkg-source: info: applying fix_sf_privacy_breach_issue.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying addition_from_mugsy.patch dpkg-source: info: applying 0009-improve-performance-of-delta2maf.patch dpkg-source: info: applying mummerplot.patch dpkg-source: info: applying remove-csh-dependency.patch dpkg-source: info: applying remove-csh-from-doc.patch dpkg-source: info: applying reproducible-build.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20731121 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20731121 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20731121 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package mummer dpkg-buildpackage: info: source version 3.23+dfsg-7 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/<>/mummer-3.23+dfsg' rm -f *~ core* cd /<>/mummer-3.23+dfsg/src/kurtz; make clean make[2]: Entering directory '/<>/mummer-3.23+dfsg/src/kurtz' rm -f *~ cd libbasedir; make clean make[3]: Entering directory '/<>/mummer-3.23+dfsg/src/kurtz/libbasedir' rm -f *.splint rm -f *.[oa] *.dbg.o *.inc *.aux *.dvi *.log *~ make[3]: Leaving directory '/<>/mummer-3.23+dfsg/src/kurtz/libbasedir' cd streesrc; make clean make[3]: Entering directory '/<>/mummer-3.23+dfsg/src/kurtz/streesrc' rm -f *.splint rm -f *.[aox] *~ make[3]: Leaving directory '/<>/mummer-3.23+dfsg/src/kurtz/streesrc' cd mm3src; make clean make[3]: Entering directory '/<>/mummer-3.23+dfsg/src/kurtz/mm3src' rm -f *.splint rm -f *.[ox] shit[123] *~ cd /<>/mummer-3.23+dfsg; rm -f maxmat3.x maxmat3.dbg.x mummer make[3]: Leaving directory '/<>/mummer-3.23+dfsg/src/kurtz/mm3src' make[2]: Leaving directory '/<>/mummer-3.23+dfsg/src/kurtz' cd /<>/mummer-3.23+dfsg/src/tigr; make clean make[2]: Entering directory '/<>/mummer-3.23+dfsg/src/tigr' rm -f *.o *~ cd /<>/mummer-3.23+dfsg; rm -f annotate combineMUMs delta-filter gaps mgaps postnuc postpro prenuc prepro repeat-match show-aligns show-coords show-tiling show-snps show-diff delta2blocks delta2maf cd /<>/mummer-3.23+dfsg/aux_bin; rm -f annotate combineMUMs delta-filter gaps mgaps postnuc postpro prenuc prepro repeat-match show-aligns show-coords show-tiling show-snps show-diff delta2blocks delta2maf make[2]: Leaving directory '/<>/mummer-3.23+dfsg/src/tigr' cd /<>/mummer-3.23+dfsg/scripts; make clean make[2]: Entering directory '/<>/mummer-3.23+dfsg/scripts' rm -f *~ cd /<>/mummer-3.23+dfsg; rm -f exact-tandems mapview mummerplot nucmer promer run-mummer1 run-mummer3 nucmer2xfig dnadiff make[2]: Leaving directory '/<>/mummer-3.23+dfsg/scripts' cd /<>/mummer-3.23+dfsg/docs; make clean make[2]: Entering directory '/<>/mummer-3.23+dfsg/docs' rm -f *.dvi *.aux *.log *.out *~ maxmat3man.pdf make[2]: Leaving directory '/<>/mummer-3.23+dfsg/docs' make[1]: Leaving directory '/<>/mummer-3.23+dfsg' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>/mummer-3.23+dfsg' [ -d /<>/mummer-3.23+dfsg/debian/tmp/usr/bin ] || mkdir -p /<>/mummer-3.23+dfsg/debian/tmp/usr/bin [ -d /<>/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer ] || mkdir -p /<>/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer dh_auto_build -- BIN_DIR=/<>/mummer-3.23+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/<>/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer \ FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer \ FINAL_SCRIPT_DIR=/usr/share/perl5/ \ CFLAGS="-g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make -j4 "INSTALL=install --strip-program=true" BIN_DIR=/<>/mummer-3.23\+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/<>/mummer-3.23\+dfsg/debian/tmp/usr/lib/mummer FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer FINAL_SCRIPT_DIR=/usr/share/perl5/ "CFLAGS=-g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc" "CXXFLAGS=-g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" "LDFLAGS=-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>/mummer-3.23+dfsg' cd /<>/mummer-3.23+dfsg/src/kurtz; make mummer cd /<>/mummer-3.23+dfsg/src/tigr; make CFLAGS="-g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" all cd /<>/mummer-3.23+dfsg/scripts; make all make[3]: Entering directory '/<>/mummer-3.23+dfsg/src/kurtz' cd libbasedir; make libbase.a make[3]: Entering directory '/<>/mummer-3.23+dfsg/scripts' make[3]: Entering directory '/<>/mummer-3.23+dfsg/src/tigr' /usr/bin/g++ -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 tigrinc.cc -c -o tigrinc.o /usr/bin/g++ -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 delta.cc -c -o delta.o cp -a ../debian/sh-replacement-scripts/exact-tandems /<>/mummer-3.23+dfsg/debian/tmp/usr/bin make[4]: Entering directory '/<>/mummer-3.23+dfsg/src/kurtz/libbasedir' /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cleanMUMcand.o cleanMUMcand.c chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/exact-tandems /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ mapview.pl > /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ mummerplot.pl > /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ nucmer.pl > /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ promer.pl > /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/promer chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/promer cp -a ../debian/sh-replacement-scripts/run-mummer1 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer1 cp -a ../debian/sh-replacement-scripts/run-mummer3 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer3 /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ nucmer2xfig.pl > /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ dnadiff.pl > /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/dnadiff chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/dnadiff make[3]: Leaving directory '/<>/mummer-3.23+dfsg/scripts' /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o clock.o clock.c /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mapfile.o mapfile.c /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multiseq.o multiseq.c /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procopt.o procopt.c /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o safescpy.o safescpy.c /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seterror.o seterror.c /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o space.o space.c tigrinc.cc: In function ‘int Read_String(FILE*, char*&, long int&, char*, int)’: tigrinc.cc:335:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 335 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ tigrinc.cc: In function ‘int Read_File(FILE*, long int&, std::map, char*>&, int)’: tigrinc.cc:452:9: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 452 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/bin/g++ -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 sw_align.cc -c -o sw_align.o ar sruv libbase.a cleanMUMcand.o clock.o mapfile.o multiseq.o procopt.o safescpy.o seterror.o space.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libbase.a a - cleanMUMcand.o a - clock.o a - mapfile.o a - multiseq.o a - procopt.o a - safescpy.o a - seterror.o a - space.o make[4]: Leaving directory '/<>/mummer-3.23+dfsg/src/kurtz/libbasedir' cd streesrc; make libstree.a make[4]: Entering directory '/<>/mummer-3.23+dfsg/src/kurtz/streesrc' /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o construct.o construct.c /usr/bin/g++ -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 translate.cc -c -o translate.o /usr/bin/g++ -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now prenuc.cc tigrinc.o -o /<>/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prenuc; chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prenuc /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o access.o access.c /usr/bin/g++ -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now prepro.cc tigrinc.o translate.o -o /<>/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro; chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o scanpref.o scanpref.c /usr/bin/g++ -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now repeat-match.cc tigrinc.o -o /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match; chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o linkloc.o linkloc.c /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o depthtab.o depthtab.c /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ex2leav.o ex2leav.c /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dfs.o dfs.c /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o overmax.o overmax.c /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o oversucc.o oversucc.c /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o addleafcount.o addleafcount.c /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o iterator.o iterator.c /usr/bin/g++ -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now annotate.cc tigrinc.o -o /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate; chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate ar sruv libstree.a construct.o access.o scanpref.o linkloc.o depthtab.o ex2leav.o dfs.o overmax.o oversucc.o addleafcount.o iterator.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libstree.a a - construct.o a - access.o a - scanpref.o a - linkloc.o a - depthtab.o a - ex2leav.o a - dfs.o a - overmax.o a - oversucc.o a - addleafcount.o a - iterator.o make[4]: Leaving directory '/<>/mummer-3.23+dfsg/src/kurtz/streesrc' cd mm3src; make mummer make[4]: Entering directory '/<>/mummer-3.23+dfsg/src/kurtz/mm3src' /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmat3.o maxmat3.c /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmatopt.o maxmatopt.c /usr/bin/g++ -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now combineMUMs.cc tigrinc.o -o /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/combineMUMs; chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/combineMUMs /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmatinp.o maxmatinp.c /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmumcand.o findmumcand.c /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmaxmat.o findmaxmat.c combineMUMs.cc:26:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 26 | #define DEFAULT_ERROR_FILE_NAME "witherrors.gaps" | ^~~~~~~~~~~~~~~~~ combineMUMs.cc:109:27: note: in expansion of macro ‘DEFAULT_ERROR_FILE_NAME’ 109 | char * Error_File_Name = DEFAULT_ERROR_FILE_NAME; | ^~~~~~~~~~~~~~~~~~~~~~~ combineMUMs.cc:135:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 135 | char * Query_Suffix = "Query"; | ^~~~~~~ combineMUMs.cc:145:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 145 | char * Ref_Suffix = "Ref"; | ^~~~~ combineMUMs.cc: In function ‘int Read_String(FILE*, char**, long int*, char*)’: combineMUMs.cc:1481:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1481 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/mummer-3.23+dfsg/src/kurtz/libbasedir -I/<>/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procmaxmat.o procmaxmat.c /usr/bin/gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now maxmat3.o maxmatopt.o maxmatinp.o findmumcand.o findmaxmat.o procmaxmat.o ../streesrc/libstree.a ../libbasedir/libbase.a \ -o /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer; chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer make[4]: Leaving directory '/<>/mummer-3.23+dfsg/src/kurtz/mm3src' make[3]: Leaving directory '/<>/mummer-3.23+dfsg/src/kurtz' /usr/bin/g++ -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now gaps.cc tigrinc.o -o /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/gaps; chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/gaps /usr/bin/g++ -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now mgaps.cc tigrinc.o -o /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/mgaps; chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/mgaps mgaps.cc: In function ‘int Process_Cluster(Match_t*, int, char*)’: mgaps.cc:533:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 533 | label = "#\n"; | ^~~~~ mgaps.cc: In function ‘void Process_Matches(Match_t*, int, char*)’: mgaps.cc:620:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 620 | label = "#\n"; | ^~~~~ /usr/bin/g++ -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now postnuc.cc tigrinc.o sw_align.o -o /<>/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postnuc; chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postnuc /usr/bin/g++ -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now postpro.cc tigrinc.o sw_align.o translate.o -o /<>/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postpro; chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postpro /usr/bin/g++ -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now show-aligns.cc tigrinc.o translate.o delta.o -o /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/show-aligns; chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/show-aligns /usr/bin/g++ -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now show-coords.cc tigrinc.o delta.o -o /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/show-coords; chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/show-coords show-coords.cc: In function ‘void printBtab(std::vector)’: show-coords.cc:799:12: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 799 | type = "NUCMER"; | ^~~~~~~~ show-coords.cc:801:12: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 801 | type = "PROMER"; | ^~~~~~~~ show-coords.cc:803:12: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 803 | type = "NULL"; | ^~~~~~ In file included from /usr/include/c++/10/vector:72, from sw_align.hh:23, from postpro.cc:47: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Alignment&}; _Tp = Alignment; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/bin/g++ -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now show-tiling.cc tigrinc.o delta.o -o /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/show-tiling; chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/show-tiling /usr/bin/g++ -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now show-snps.cc tigrinc.o translate.o delta.o -o /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/show-snps; chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/show-snps /usr/bin/g++ -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now show-diff.cc tigrinc.o delta.o -o /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/show-diff; chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/show-diff /usr/bin/g++ -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now delta2blocks.cc tigrinc.o translate.o delta.o -o /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2blocks; chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2blocks delta2blocks.cc: In function ‘void printAlignments(std::vector, char*, char*, char*, char*)’: delta2blocks.cc:408:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:26: warning: format ‘%d’ expects argument of type ‘int’, but argument 5 has type ‘long int’ [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:29: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long int’ [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:32: warning: format ‘%d’ expects argument of type ‘int’, but argument 7 has type ‘long int’ [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld /usr/bin/g++ -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now delta2maf.cc tigrinc.o translate.o delta.o -o /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2maf; chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2maf delta2maf.cc: In function ‘void printAlignments(std::vector, char*, char*, std::map, char*>&)’: delta2maf.cc:547:24: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long int’ [-Wformat=] 547 | printf("a score=%d\n",abs(Ap->eR - Ap->sR)); | ~^ ~~~~~~~~~~~~~~~~~~~~ | | | | int long int | %ld delta2maf.cc:587:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:587:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:587:29: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long int’ [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:590:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:590:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:590:29: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long int’ [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:597:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:597:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:597:29: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long int’ [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:600:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:600:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:600:29: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long int’ [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:633:13: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 633 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:637:13: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 637 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:659:14: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 659 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:663:14: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 663 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:710:16: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 710 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:714:16: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 714 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:732:17: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 732 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:736:17: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 736 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* /usr/bin/g++ -g -O3 -fdebug-prefix-map=/<>/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now delta-filter.cc tigrinc.o delta.o -o /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/delta-filter; chmod 755 /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/delta-filter make[3]: Leaving directory '/<>/mummer-3.23+dfsg/src/tigr' make[2]: Leaving directory '/<>/mummer-3.23+dfsg' /usr/bin/make -C docs make[2]: Entering directory '/<>/mummer-3.23+dfsg/docs' pdflatex maxmat3man This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./maxmat3man.tex LaTeX2e <2020-10-01> patch level 2 L3 programming layer <2020-10-27> xparse <2020-03-03> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/ntgclass/a4.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./skaff.sty) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file maxmat3man.aux. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) LaTeX Warning: Reference `SecBasicNotions' on page 1 undefined on input line 36 . Overfull \hbox (4.79204pt too wide) in paragraph at lines 60--61 \OT1/ptm/m/n/12 Compute \OT1/ptm/m/it/12 MUM\OT1/ptm/m/n/12 -candidates, i.e. m atches that are unique in the reference-sequence [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] LaTeX Warning: Reference `SecBasicNotions' on page 2 undefined on input line 10 4. [2] [3] Overfull \hbox (8.54073pt too wide) in paragraph at lines 225--225 []\OT1/pcr/m/n/10.95 # ........................................................ ......[] [4] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALL2_BOVIN|ALLERGEN 139 1 155 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALG3_YEAST|PUTATIVE 425 2 904 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALF_TRYBB|FRUCTOSE-BISPHOSPHATE 177 4 794 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_YEAST|ALG11 114 12 599 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 354 33 261 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 212 40 991 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 314 41 093 7[] [5] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 360 41 138 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 79 44 186 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALP_CEPAC|ALKALINE 366 45 304 7[] [6] [7] (./maxmat3man.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on maxmat3man.pdf (7 pages, 125881 bytes). Transcript written on maxmat3man.log. pdflatex maxmat3man This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./maxmat3man.tex LaTeX2e <2020-10-01> patch level 2 L3 programming layer <2020-10-27> xparse <2020-03-03> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/ntgclass/a4.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./skaff.sty) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./maxmat3man.aux) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) Overfull \hbox (4.79204pt too wide) in paragraph at lines 60--61 \OT1/ptm/m/n/12 Compute \OT1/ptm/m/it/12 MUM\OT1/ptm/m/n/12 -candidates, i.e. m atches that are unique in the reference-sequence [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [3] Overfull \hbox (8.54073pt too wide) in paragraph at lines 225--225 []\OT1/pcr/m/n/10.95 # ........................................................ ......[] [4] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALL2_BOVIN|ALLERGEN 139 1 155 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALG3_YEAST|PUTATIVE 425 2 904 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALF_TRYBB|FRUCTOSE-BISPHOSPHATE 177 4 794 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_YEAST|ALG11 114 12 599 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 354 33 261 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 212 40 991 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 314 41 093 7[] [5] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 360 41 138 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 79 44 186 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALP_CEPAC|ALKALINE 366 45 304 7[] [6] [7] (./maxmat3man.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on maxmat3man.pdf (7 pages, 125206 bytes). Transcript written on maxmat3man.log. make[2]: Leaving directory '/<>/mummer-3.23+dfsg/docs' make[1]: Leaving directory '/<>/mummer-3.23+dfsg' dh_auto_test -a make -j4 check make[1]: Entering directory '/<>/mummer-3.23+dfsg' check complete make[1]: Leaving directory '/<>/mummer-3.23+dfsg' create-stamp debian/debhelper-build-stamp debian/rules override_dh_prep make[1]: Entering directory '/<>/mummer-3.23+dfsg' dh_prep -X debian/tmp make[1]: Leaving directory '/<>/mummer-3.23+dfsg' debian/rules override_dh_auto_install make[1]: Entering directory '/<>/mummer-3.23+dfsg' mv /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate /<>/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer-annotate make[1]: Leaving directory '/<>/mummer-3.23+dfsg' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/<>/mummer-3.23+dfsg' dh_compress -Xpdf make[1]: Leaving directory '/<>/mummer-3.23+dfsg' dh_fixperms -a dh_missing -a dh_dwz -a -a dwz: debian/mummer/usr/bin/mummer: DWARF compression not beneficial - old size 62963 new size 63536 dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing mummer (in debian/mummer); do_strip: , oemstrip: pkgstriptranslations: processing mummer-dbgsym (in debian/.debhelper/mummer/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/mummer/DEBIAN/control, package mummer, directory debian/mummer pkgstripfiles: processing control file: debian/.debhelper/mummer/dbgsym-root/DEBIAN/control, package mummer-dbgsym, directory debian/.debhelper/mummer/dbgsym-root dpkg-deb: building package 'mummer-dbgsym' in 'debian/.debhelper/scratch-space/build-mummer/mummer-dbgsym_3.23+dfsg-7_ppc64el.deb'. pkgstripfiles: Truncating usr/share/doc/mummer/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package mummer ... pkgstripfiles: No PNG files. dpkg-deb: building package 'mummer' in '../mummer_3.23+dfsg-7_ppc64el.deb'. Renaming mummer-dbgsym_3.23+dfsg-7_ppc64el.deb to mummer-dbgsym_3.23+dfsg-7_ppc64el.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../mummer_3.23+dfsg-7_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-12-26T23:43:50Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ mummer_3.23+dfsg-7_ppc64el.changes: ----------------------------------- Format: 1.8 Date: Sat, 26 Dec 2020 21:30:06 +0530 Source: mummer Binary: mummer Architecture: ppc64el Version: 3.23+dfsg-7 Distribution: hirsute-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Nilesh Patra Description: mummer - Efficient sequence alignment of full genomes Changes: mummer (3.23+dfsg-7) unstable; urgency=medium . * Team Upload. * Ignore build date in docs (Makes build reproducible) * Propagate CPPFLAGS to enable hardening (fixes blhc) * Update d/u/metadata * Declare compliance with policy 4.5.1 Checksums-Sha1: 9629856d1706fb9f29a1d31bfe5a81e07e0ef301 3373316 mummer-dbgsym_3.23+dfsg-7_ppc64el.ddeb 9df525b85b4e8ee747ef87088b0b286c38eea7f7 7143 mummer_3.23+dfsg-7_ppc64el.buildinfo 244ae5654037aa332d5363de789a37fd047aeb87 685164 mummer_3.23+dfsg-7_ppc64el.deb Checksums-Sha256: 0be0d5f03c804b121c6edf25d7dc6a91eec300f3fde845c57433fa9522be51c9 3373316 mummer-dbgsym_3.23+dfsg-7_ppc64el.ddeb c2a975177ef52d31902a71ef27f7426282410f5e2d42d27d6c89c9271997af6a 7143 mummer_3.23+dfsg-7_ppc64el.buildinfo 3ba1153a6e5f2698ca2470455fa14cef749d7033f9f400c060c4047a84137560 685164 mummer_3.23+dfsg-7_ppc64el.deb Files: 70f94c820305b3f9ee3e1d37d863d2fc 3373316 debug optional mummer-dbgsym_3.23+dfsg-7_ppc64el.ddeb a6e4510a4d81647bb791da6e7325e94f 7143 science optional mummer_3.23+dfsg-7_ppc64el.buildinfo 50619922ab825f6150b446fef224e358 685164 science optional mummer_3.23+dfsg-7_ppc64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: mummer Binary: mummer mummer-dbgsym Architecture: ppc64el Version: 3.23+dfsg-7 Checksums-Md5: 70f94c820305b3f9ee3e1d37d863d2fc 3373316 mummer-dbgsym_3.23+dfsg-7_ppc64el.ddeb 50619922ab825f6150b446fef224e358 685164 mummer_3.23+dfsg-7_ppc64el.deb Checksums-Sha1: 9629856d1706fb9f29a1d31bfe5a81e07e0ef301 3373316 mummer-dbgsym_3.23+dfsg-7_ppc64el.ddeb 244ae5654037aa332d5363de789a37fd047aeb87 685164 mummer_3.23+dfsg-7_ppc64el.deb Checksums-Sha256: 0be0d5f03c804b121c6edf25d7dc6a91eec300f3fde845c57433fa9522be51c9 3373316 mummer-dbgsym_3.23+dfsg-7_ppc64el.ddeb 3ba1153a6e5f2698ca2470455fa14cef749d7033f9f400c060c4047a84137560 685164 mummer_3.23+dfsg-7_ppc64el.deb Build-Origin: Ubuntu Build-Architecture: ppc64el Build-Date: Sat, 26 Dec 2020 23:43:50 +0000 Build-Path: /<>/mummer-3.23+dfsg Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-14), automake (= 1:1.16.3-1ubuntu1), autopoint (= 0.21-3), autotools-dev (= 20180224.1+nmu1), base-files (= 11ubuntu16), base-passwd (= 3.5.48), bash (= 5.1-1ubuntu1), binutils (= 2.35.50.20201218-1ubuntu3), binutils-common (= 2.35.50.20201218-1ubuntu3), binutils-powerpc64le-linux-gnu (= 2.35.50.20201218-1ubuntu3), bsdextrautils (= 2.36.1-1ubuntu2), bsdutils (= 1:2.36.1-1ubuntu2), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu2), coreutils (= 8.32-4ubuntu2), cpp (= 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Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 4212 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2), perl:any, gawk Section: science Priority: optional Homepage: http://mummer.sourceforge.net/ Description: Efficient sequence alignment of full genomes MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences. drwxr-xr-x root/root 0 2020-12-26 16:00 ./ drwxr-xr-x root/root 0 2020-12-26 16:00 ./usr/ drwxr-xr-x root/root 0 2020-12-26 16:00 ./usr/bin/ -rwxr-xr-x root/root 67976 2020-12-26 16:00 ./usr/bin/combineMUMs -rwxr-xr-x root/root 133480 2020-12-26 16:00 ./usr/bin/delta-filter -rwxr-xr-x root/root 133488 2020-12-26 16:00 ./usr/bin/delta2blocks -rwxr-xr-x root/root 199024 2020-12-26 16:00 ./usr/bin/delta2maf -rwxr-xr-x root/root 26821 2020-12-26 16:00 ./usr/bin/dnadiff -rwxr-xr-x root/root 766 2020-12-26 15:03 ./usr/bin/exact-tandems -rwxr-xr-x root/root 67840 2020-12-26 16:00 ./usr/bin/gaps -rwxr-xr-x root/root 29757 2020-12-26 16:00 ./usr/bin/mapview -rwxr-xr-x root/root 67968 2020-12-26 16:00 ./usr/bin/mgaps -rwxr-xr-x root/root 133224 2020-12-26 16:00 ./usr/bin/mummer -rwxr-xr-x root/root 67840 2020-12-26 16:00 ./usr/bin/mummer-annotate -rwxr-xr-x root/root 49634 2020-12-26 16:00 ./usr/bin/mummerplot -rwxr-xr-x root/root 12390 2020-12-26 16:00 ./usr/bin/nucmer -rwxr-xr-x root/root 5884 2020-12-26 16:00 ./usr/bin/nucmer2xfig -rwxr-xr-x root/root 11898 2020-12-26 16:00 ./usr/bin/promer -rwxr-xr-x root/root 67856 2020-12-26 16:00 ./usr/bin/repeat-match -rwxr-xr-x root/root 981 2020-12-26 15:03 ./usr/bin/run-mummer1 -rwxr-xr-x root/root 1115 2020-12-26 15:03 ./usr/bin/run-mummer3 -rwxr-xr-x root/root 133488 2020-12-26 16:00 ./usr/bin/show-aligns -rwxr-xr-x root/root 133480 2020-12-26 16:00 ./usr/bin/show-coords -rwxr-xr-x root/root 133480 2020-12-26 16:00 ./usr/bin/show-diff -rwxr-xr-x root/root 199016 2020-12-26 16:00 ./usr/bin/show-snps -rwxr-xr-x root/root 199024 2020-12-26 16:00 ./usr/bin/show-tiling drwxr-xr-x root/root 0 2020-12-26 16:00 ./usr/lib/ drwxr-xr-x root/root 0 2020-12-26 16:00 ./usr/lib/mummer/ -rwxr-xr-x root/root 133480 2020-12-26 16:00 ./usr/lib/mummer/postnuc -rwxr-xr-x root/root 133480 2020-12-26 16:00 ./usr/lib/mummer/postpro -rwxr-xr-x root/root 67840 2020-12-26 16:00 ./usr/lib/mummer/prenuc -rwxr-xr-x root/root 67840 2020-12-26 16:00 ./usr/lib/mummer/prepro -rw-r--r-- root/root 760 2011-12-17 02:49 ./usr/lib/mummer/tandem-repeat.awk drwxr-xr-x root/root 0 2020-12-26 16:00 ./usr/share/ drwxr-xr-x root/root 0 2020-12-26 16:00 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-12-26 16:00 ./usr/share/doc/mummer/ -rw-r--r-- root/root 327 2011-12-17 02:49 ./usr/share/doc/mummer/ACKNOWLEDGEMENTS -rw-r--r-- root/root 343 2020-12-26 15:03 ./usr/share/doc/mummer/NEWS.Debian.gz -rw-r--r-- root/root 343 2020-12-26 15:03 ./usr/share/doc/mummer/NEWS.gz -rw-r--r-- root/root 207 2020-12-26 15:03 ./usr/share/doc/mummer/README.Debian -rw-r--r-- root/root 11463 2020-12-26 16:00 ./usr/share/doc/mummer/README.gz -rw-r--r-- root/root 1724 2020-12-26 16:00 ./usr/share/doc/mummer/changelog.Debian.gz -rw-r--r-- root/root 1224 2020-12-26 15:03 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./usr/share/perl5/Foundation.pm +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: n/a Build-Time: 26 Distribution: hirsute-proposed Host Architecture: ppc64el Install-Time: 37 Job: mummer_3.23+dfsg-7.dsc Machine Architecture: ppc64el Package: mummer Package-Time: 63 Source-Version: 3.23+dfsg-7 Space: n/a Status: successful Version: 3.23+dfsg-7 -------------------------------------------------------------------------------- Finished at 2020-12-26T23:43:50Z Build needed 00:01:03, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=ppc64el PACKAGEBUILD-20731121 Scanning for processes to kill in build PACKAGEBUILD-20731121