https://launchpad.net/ubuntu/+source/muscle/1:5.1.0-1/+build/25478690 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy02-amd64-047 5.4.0-136-generic #153-Ubuntu SMP Thu Nov 24 15:56:58 UTC 2022 x86_64 Buildd toolchain package versions: launchpad-buildd_225~602~ubuntu20.04.1 python3-lpbuildd_225~602~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.6 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 12 Jan 17:19:16 ntpdate[2212]: adjust time server 10.131.248.1 offset -0.000173 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-25478690 --image-type chroot /home/buildd/filecache-default/1fc1752c0976ad9eb0e621fd063fde252dab04e3 Creating target for build PACKAGEBUILD-25478690 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-25478690 Starting target for build PACKAGEBUILD-25478690 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-25478690 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-25478690 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-25478690 Updating target for build PACKAGEBUILD-25478690 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main amd64 Packages [1389 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe amd64 Packages [14.4 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5880 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 Packages [298 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [109 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe amd64 Packages [1188 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [427 kB] Fetched 24.7 MB in 3s (9149 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be REMOVED: lsb-base* The following packages will be upgraded: adduser bash binutils binutils-common binutils-x86-64-linux-gnu coreutils cpp-12 debconf diffutils dpkg dpkg-dev g++-12 gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv libasan8 libatomic1 libbinutils libcap2 libcc1-0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdpkg-perl libgcc-12-dev libgcc-s1 libgomp1 libgprofng0 libitm1 liblsan0 liblzma5 libmpfr6 libncurses6 libncursesw6 libpcre2-8-0 libperl5.36 libquadmath0 libsqlite3-0 libssl3 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libtsan2 libubsan1 libudev1 libzstd1 linux-libc-dev ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.36 systemd systemd-sysv sysvinit-utils tzdata xz-utils zlib1g 65 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. Need to get 89.9 MB of archives. After this operation, 4927 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 bash amd64 5.2.15-2ubuntu1 [795 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 coreutils amd64 9.1-1ubuntu2 [1407 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 diffutils amd64 1:3.8-3 [176 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 liblzma5 amd64 5.4.0-0.1 [124 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 dpkg amd64 1.21.17ubuntu5 [1334 kB] Get:6 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 ncurses-bin amd64 6.4-1 [185 kB] Get:7 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libperl5.36 amd64 5.36.0-7 [4834 kB] Get:8 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 perl amd64 5.36.0-7 [235 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 perl-base amd64 5.36.0-7 [1779 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 perl-modules-5.36 all 5.36.0-7 [2984 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libcrypt-dev amd64 1:4.4.33-2 [113 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libcrypt1 amd64 1:4.4.33-2 [80.7 kB] Get:13 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 zlib1g amd64 1:1.2.13.dfsg-1ubuntu4 [61.2 kB] Get:14 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 ncurses-base all 6.4-1 [21.3 kB] Get:15 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 sysvinit-utils amd64 3.05-7ubuntu1 [26.2 kB] Get:16 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 systemd-sysv amd64 252.4-1ubuntu1 [11.4 kB] Get:17 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libcap2 amd64 1:2.66-3 [27.8 kB] Get:18 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 debconf all 1.5.82 [125 kB] Get:19 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libssl3 amd64 3.0.7-1ubuntu1 [1896 kB] Get:20 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libzstd1 amd64 1.5.2+dfsg2-3 [282 kB] Get:21 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 systemd amd64 252.4-1ubuntu1 [3001 kB] Get:22 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libsystemd-shared amd64 252.4-1ubuntu1 [1771 kB] Get:23 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libsystemd0 amd64 252.4-1ubuntu1 [328 kB] Get:24 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libcc1-0 amd64 12.2.0-12ubuntu1 [46.7 kB] Get:25 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libgomp1 amd64 12.2.0-12ubuntu1 [125 kB] Get:26 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libitm1 amd64 12.2.0-12ubuntu1 [29.5 kB] Get:27 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libatomic1 amd64 12.2.0-12ubuntu1 [10.4 kB] Get:28 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libasan8 amd64 12.2.0-12ubuntu1 [2439 kB] Get:29 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 liblsan0 amd64 12.2.0-12ubuntu1 [1060 kB] Get:30 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libtsan2 amd64 12.2.0-12ubuntu1 [2455 kB] Get:31 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libubsan1 amd64 12.2.0-12ubuntu1 [969 kB] Get:32 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libquadmath0 amd64 12.2.0-12ubuntu1 [152 kB] Get:33 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gcc-12-base amd64 12.2.0-12ubuntu1 [19.4 kB] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libstdc++6 amd64 12.2.0-12ubuntu1 [678 kB] Get:35 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 g++-12 amd64 12.2.0-12ubuntu1 [12.0 MB] Get:36 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libstdc++-12-dev amd64 12.2.0-12ubuntu1 [2158 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libgcc-12-dev amd64 12.2.0-12ubuntu1 [2577 kB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gcc-12 amd64 12.2.0-12ubuntu1 [21.4 MB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 cpp-12 amd64 12.2.0-12ubuntu1 [10.6 MB] Get:40 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libgcc-s1 amd64 12.2.0-12ubuntu1 [53.8 kB] Get:41 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libmpfr6 amd64 4.1.1-3 [336 kB] Get:42 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libctf-nobfd0 amd64 2.39.90.20221231-1ubuntu1 [99.9 kB] Get:43 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libgprofng0 amd64 2.39.90.20221231-1ubuntu1 [897 kB] Get:44 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libctf0 amd64 2.39.90.20221231-1ubuntu1 [97.4 kB] Get:45 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libbinutils amd64 2.39.90.20221231-1ubuntu1 [630 kB] Get:46 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 binutils-common amd64 2.39.90.20221231-1ubuntu1 [236 kB] Get:47 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 binutils amd64 2.39.90.20221231-1ubuntu1 [3256 B] Get:48 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.39.90.20221231-1ubuntu1 [2491 kB] Get:49 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libpcre2-8-0 amd64 10.42-1 [228 kB] Get:50 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libncursesw6 amd64 6.4-1 [147 kB] Get:51 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libncurses6 amd64 6.4-1 [112 kB] Get:52 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libtinfo6 amd64 6.4-1 [101 kB] Get:53 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libudev1 amd64 252.4-1ubuntu1 [89.6 kB] Get:54 http://ftpmaster.internal/ubuntu lunar/main amd64 adduser all 3.129ubuntu1 [59.0 kB] Get:55 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gpgv amd64 2.2.40-1ubuntu2 [137 kB] Get:56 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libsqlite3-0 amd64 3.40.1-1 [654 kB] Get:57 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 openssl amd64 3.0.7-1ubuntu1 [1179 kB] Get:58 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 tzdata all 2022g-2ubuntu1 [397 kB] Get:59 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 xz-utils amd64 5.4.0-0.1 [176 kB] Get:60 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 dpkg-dev all 1.21.17ubuntu5 [1070 kB] Get:61 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libdpkg-perl all 1.21.17ubuntu5 [247 kB] Get:62 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gpg amd64 2.2.40-1ubuntu2 [523 kB] Get:63 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gpgconf amd64 2.2.40-1ubuntu2 [93.7 kB] Get:64 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gpg-agent amd64 2.2.40-1ubuntu2 [217 kB] Get:65 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 linux-libc-dev amd64 5.19.0-23.24 [1345 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 89.9 MB in 1s (142 MB/s) (Reading database ... 13093 files and directories currently installed.) 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Purging configuration files for lsb-base (11.2ubuntu1) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-25478690 amd64 lunar-proposed -c chroot:build-PACKAGEBUILD-25478690 --arch=amd64 --dist=lunar-proposed --nolog -A muscle_5.1.0-1.dsc Initiating build PACKAGEBUILD-25478690 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-136-generic #153-Ubuntu SMP Thu Nov 24 15:56:58 UTC 2022 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-047.buildd +==============================================================================+ | muscle 1:5.1.0-1 (amd64) Thu, 12 Jan 2023 17:19:35 +0000 | +==============================================================================+ Package: muscle Version: 1:5.1.0-1 Source Version: 1:5.1.0-1 Distribution: lunar-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-25478690/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/muscle-6pzooG/resolver-UfMiEo' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- muscle_5.1.0-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/muscle-6pzooG/muscle-5.1.0' with '<>' I: NOTICE: Log filtering will replace 'build/muscle-6pzooG' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), debhelper, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), debhelper, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [373 B] Get:5 copy:/<>/apt_archive ./ Packages [454 B] Fetched 1784 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu71 libmagic-mgc libmagic1 libpipeline1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu71 libmagic-mgc libmagic1 libpipeline1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy 0 upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 18.6 MB of archives. After this operation, 67.2 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [672 B] Get:2 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libelf1 amd64 0.188-2 [52.9 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main amd64 libicu71 amd64 71.1-3ubuntu1 [10.6 MB] Get:4 http://ftpmaster.internal/ubuntu lunar/main amd64 libxml2 amd64 2.9.14+dfsg-1.1 [762 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main amd64 bsdextrautils amd64 2.38.1-4ubuntu1 [71.0 kB] Get:6 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libmagic-mgc amd64 1:5.44-1 [291 kB] Get:7 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libmagic1 amd64 1:5.44-1 [85.6 kB] Get:8 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 file amd64 1:5.44-1 [21.6 kB] Get:9 http://ftpmaster.internal/ubuntu lunar/main amd64 gettext-base amd64 0.21-10 [37.6 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main amd64 libuchardet0 amd64 0.0.7-1build2 [76.9 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main amd64 groff-base amd64 1.22.4-9 [937 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main amd64 libpipeline1 amd64 1.5.7-1 [23.3 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main amd64 man-db amd64 2.11.2-1 [1218 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main amd64 m4 amd64 1.4.19-2 [243 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main amd64 autoconf all 2.71-2 [338 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main amd64 autotools-dev all 20220109.1 [44.9 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main amd64 automake all 1:1.16.5-1.3 [558 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main amd64 autopoint all 0.21-10 [421 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main amd64 libdebhelper-perl all 13.10.1ubuntu1 [67.1 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main amd64 libtool all 2.4.7-5 [166 kB] Get:21 http://ftpmaster.internal/ubuntu lunar/main amd64 dh-autoreconf all 20 [16.1 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:23 http://ftpmaster.internal/ubuntu lunar/main amd64 libsub-override-perl all 0.09-4 [8706 B] Get:24 http://ftpmaster.internal/ubuntu lunar/main amd64 libfile-stripnondeterminism-perl all 1.13.0-2 [18.2 kB] Get:25 http://ftpmaster.internal/ubuntu lunar/main amd64 dh-strip-nondeterminism all 1.13.0-2 [5308 B] Get:26 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libdw1 amd64 0.188-2 [251 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main amd64 debugedit amd64 1:5.0-5 [46.1 kB] Get:28 http://ftpmaster.internal/ubuntu lunar/main amd64 dwz amd64 0.15-1 [112 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main amd64 gettext amd64 0.21-10 [867 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:32 http://ftpmaster.internal/ubuntu lunar/main amd64 debhelper all 13.10.1ubuntu1 [924 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.6 MB in 0s (120 MB/s) Selecting previously unselected package libelf1:amd64. (Reading database ... 13111 files and directories currently installed.) Preparing to unpack .../00-libelf1_0.188-2_amd64.deb ... Unpacking libelf1:amd64 (0.188-2) ... Selecting previously unselected package libicu71:amd64. Preparing to unpack .../01-libicu71_71.1-3ubuntu1_amd64.deb ... Unpacking libicu71:amd64 (71.1-3ubuntu1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../02-libxml2_2.9.14+dfsg-1.1_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../03-bsdextrautils_2.38.1-4ubuntu1_amd64.deb ... Unpacking bsdextrautils (2.38.1-4ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.44-1_amd64.deb ... Unpacking libmagic-mgc (1:5.44-1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../05-libmagic1_1%3a5.44-1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-1) ... 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Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-2) ... Setting up libdw1:amd64 (0.188-2) ... Setting up gettext (0.21-10) ... Setting up libtool (2.4.7-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.0-2) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-9) ... Setting up debugedit (1:5.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up debhelper (13.10.1ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-136-generic #153-Ubuntu SMP Thu Nov 24 15:56:58 UTC 2022 amd64 (x86_64) Toolchain package versions: binutils_2.39.90.20221231-1ubuntu1 dpkg-dev_1.21.17ubuntu5 g++-12_12.2.0-12ubuntu1 gcc-12_12.2.0-12ubuntu1 libc6-dev_2.36-0ubuntu4 libstdc++-12-dev_12.2.0-12ubuntu1 libstdc++6_12.2.0-12ubuntu1 linux-libc-dev_5.19.0-23.24 Package versions: adduser_3.129ubuntu1 advancecomp_2.4-1 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.1 bash_5.2.15-2ubuntu1 binutils_2.39.90.20221231-1ubuntu1 binutils-common_2.39.90.20221231-1ubuntu1 binutils-x86-64-linux-gnu_2.39.90.20221231-1ubuntu1 bsdextrautils_2.38.1-4ubuntu1 bsdutils_1:2.38.1-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016ubuntu1 coreutils_9.1-1ubuntu2 cpp_4:12.2.0-1ubuntu1 cpp-12_12.2.0-12ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-9ubuntu1 debconf_1.5.82 debhelper_13.10.1ubuntu1 debianutils_5.7-0.4 debugedit_1:5.0-5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-3 dpkg_1.21.17ubuntu5 dpkg-dev_1.21.17ubuntu5 dwz_0.15-1 e2fsprogs_1.46.6~rc1-1ubuntu1 fakeroot_1.30.1-1ubuntu1 file_1:5.44-1 findutils_4.9.0-3ubuntu1 g++_4:12.2.0-1ubuntu1 g++-12_12.2.0-12ubuntu1 gcc_4:12.2.0-1ubuntu1 gcc-12_12.2.0-12ubuntu1 gcc-12-base_12.2.0-12ubuntu1 gettext_0.21-10 gettext-base_0.21-10 gpg_2.2.40-1ubuntu2 gpg-agent_2.2.40-1ubuntu2 gpgconf_2.2.40-1ubuntu2 gpgv_2.2.40-1ubuntu2 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1ubuntu1 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util-linux_2.38.1-4ubuntu1 util-linux-extra_2.38.1-4ubuntu1 xz-utils_5.4.0-0.1 zlib1g_1:1.2.13.dfsg-1ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: muscle Binary: muscle Architecture: any Version: 1:5.1.0-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Charles Plessy , Andreas Tille Homepage: https://www.drive5.com/muscle/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/muscle Vcs-Git: https://salsa.debian.org/med-team/muscle.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), debhelper Package-List: muscle deb science optional arch=any Checksums-Sha1: 1c3932b45e1b3f21314d2d6c13927e2de32b580a 185437 muscle_5.1.0.orig.tar.gz 0bdc9bd1ebfa5ad850463e7a2335005188459415 9004 muscle_5.1.0-1.debian.tar.xz Checksums-Sha256: 2bba8b06e3ccabf6465fa26f459763b2029d7e7b9596881063e3aaba60d9e87d 185437 muscle_5.1.0.orig.tar.gz 7cf091b531f07184d31e2aeb23cf653f0580f782509f140f2847924f182dd15d 9004 muscle_5.1.0-1.debian.tar.xz Files: 32cf293ee6104e0aab36ac07b5ec951e 185437 muscle_5.1.0.orig.tar.gz aa7d5bae27ed7d3b04623968fe6c5269 9004 muscle_5.1.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmO/0zsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFxZw/+OOA0d0gnCpQVTIzufBcJ5NivYrIynm2I 2swKNgdAPxcA+JRvdYF2Ry66FoVioZ8t9iMvvmPvQRxeVYzaMha7m53cuY233xj6 hxbfW6RUbybNwRm50JMtnsE1JGZxSq0gFZWCSrpMlsfr82w2n5odqUqR5twpgay/ b19pWxhoNPbgZxXyZtKwo8vOUFQu50mbb4YyEDO3915k1w+2P16+e524pkyz76SP dkeNlXtdE9kLIRwYtFbIv/5Vb/jN3CQBNTOOPWrYVnOoEXEBe+AaQTgI2m/Xuljj ixnuUYvfoq+bJjjVnqqSCmLmfnsWrK/PvmyjsRWk4UwTTfQicqF/LLyGIOKdLuTw hybkc5zpy89Tm0kP7mV7RTJhwIxqEzqu2h7IcL/66t8GXFsAISnQwd4w2h9xd6NN XVj8D6Bg4f8Dq3bTezn9UMjvVTuspJK2D9rRlPXK+vhEdNiD+vKG29XqWUXXigYk RSC2qiux3qoruZOYe4VsisYgVfpji65qVqeJC1zdvyBNOsjR2WPjq9c8+zl6syCj 6wfhT9sjm9IWtCr2IyaZ5cQkiM6n+dW+2sQU47+sJk3J429TGqUGSn4tzTUfeL4n um7lMYcmnMOGIHACrYLCYK8ODhfQM9Z6V5V1pYy5dJ2nTCe1onE6SB7imyyiUpaj YXZhWUFBrvU= =eHyS -----END PGP SIGNATURE----- gpgv: Signature made Thu Jan 12 09:30:35 2023 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./muscle_5.1.0-1.dsc: no acceptable signature found dpkg-source: info: extracting muscle in /<> dpkg-source: info: unpacking muscle_5.1.0.orig.tar.gz dpkg-source: info: unpacking muscle_5.1.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-25478690 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-25478690 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-25478690 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package muscle dpkg-buildpackage: info: source version 1:5.1.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src cd src && make -j4 clean make[1]: Entering directory '/<>/src' rm -rf gitver.txt Linux/ make[1]: Leaving directory '/<>/src' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary dh binary --sourcedirectory=src dh_update_autotools_config -O--sourcedirectory=src dh_autoreconf -O--sourcedirectory=src dh_auto_configure -O--sourcedirectory=src debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- 'GPP=$(CXX)' cd src && make -j4 "INSTALL=install --strip-program=true" GPP=\$\(CXX\) make[2]: Entering directory '/<>/src' bash ./gitver.bash mkdir -p Linux/ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/addconfseq.o addconfseq.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/align.o align.cpp Repo not found, git hash set to zero g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/alignpairflat.o alignpairflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/allocflat.o allocflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/alnalnsflat.o alnalnsflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/alnmsasflat.o alnmsasflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/alnmsasflat3.o alnmsasflat3.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/alpha.o alpha.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/alpha3.o alpha3.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/assertsameseqs.o assertsameseqs.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/buildposterior3flat.o buildposterior3flat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/buildpostflat.o buildpostflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/bwdflat3.o bwdflat3.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/calcalnflat.o calcalnflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/calcalnscoreflat.o calcalnscoreflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/calcalnscoresparse.o calcalnscoresparse.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/calcposteriorflat.o calcposteriorflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/colscoreefa.o colscoreefa.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/consflat.o consflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/conspairflat.o conspairflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/defaulthmmparams.o defaulthmmparams.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/derep.o derep.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/diagbox.o diagbox.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/disperse.o disperse.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/dividetree.o dividetree.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/eacluster.o eacluster.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/eadistmx.o eadistmx.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/eadistmxmsas.o eadistmxmsas.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/eesort.o eesort.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/efabestcols.o efabestcols.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/efabestconf.o efabestconf.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/efaexplode.o efaexplode.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/efastats.o efastats.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/ensemble.o ensemble.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/fa2efa.o fa2efa.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/fasta.o fasta.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/fasta2.o fasta2.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/fwdflat3.o fwdflat3.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/getconsseq.o getconsseq.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/getpairs.o getpairs.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/getpostpairsalignedflat.o getpostpairsalignedflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/globalinputms.o globalinputms.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/guidetreejoinorder.o guidetreejoinorder.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/heatmapcolors.o heatmapcolors.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/help.o help.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/hmmdump.o hmmdump.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/hmmparams.o hmmparams.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/jalview.o jalview.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/jointrees.o jointrees.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/letterconf.o letterconf.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/letterconfhtml.o letterconfhtml.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/logaln.o logaln.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/logdistmx.o logdistmx.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/logmx.o logmx.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/main.o main.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/make_a2m.o make_a2m.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/maxcc.o maxcc.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/mpcflat.o mpcflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/msa.o msa.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/msa2.o msa2.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/msastats.o msastats.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/multisequence.o multisequence.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/mysparsemx.o mysparsemx.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/myutils.o myutils.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/pairhmm.o pairhmm.cpp myutils.cpp:1626:31: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 1626 | Log(" built %s %s\n", __DATE__, __TIME__); | ^~~~~~~~ myutils.cpp:1626:41: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 1626 | Log(" built %s %s\n", __DATE__, __TIME__); | ^~~~~~~~ myutils.cpp:2092:37: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 2092 | fprintf(f, "Built %s %s\n", __DATE__, __TIME__); | ^~~~~~~~ myutils.cpp:2092:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 2092 | fprintf(f, "Built %s %s\n", __DATE__, __TIME__); | ^~~~~~~~ myutils.cpp:2115:37: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 2115 | fprintf(f, "Built %s %s\n", __DATE__, __TIME__); | ^~~~~~~~ myutils.cpp:2115:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 2115 | fprintf(f, "Built %s %s\n", __DATE__, __TIME__); | ^~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/permutetree.o permutetree.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/perturbhmm.o perturbhmm.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/pprog.o pprog.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/pprog2.o pprog2.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/pprogt.o pprogt.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/probcons.o probcons.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/progalnflat.o progalnflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/project.o project.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/qscore.o qscore.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/qscore2.o qscore2.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/qscoreefa.o qscoreefa.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/qscorer.o qscorer.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/quarts.o quarts.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/randomchaintree.o randomchaintree.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/refineflat.o refineflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/relabel.o relabel.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/relaxflat.o relaxflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/resample.o resample.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/seb8.o seb8.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/seq.o seq.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/sequence.o sequence.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/setprobconsparams.o setprobconsparams.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/stripgappycols.o stripgappycols.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/stripgappyrows.o stripgappyrows.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/super4.o super4.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/super5.o super5.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/testfb.o testfb.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/testlog.o testlog.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/testscoretype.o testscoretype.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/textfile.o textfile.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/totalprobflat.o totalprobflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/tracebackflat.o tracebackflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/transaln.o transaln.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/transq.o transq.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/tree.o tree.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/tree2.o tree2.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/tree4.o tree4.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/treefromfile.o treefromfile.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/treeperm.o treeperm.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/treesplitter.o treesplitter.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/treesubsetnodes.o treesubsetnodes.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/treetofile.o treetofile.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/trimtoref.o trimtoref.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/trimtorefefa.o trimtorefefa.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/uclust.o uclust.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/upgma5.o upgma5.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/usage.o usage.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/usorter.o usorter.cpp g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -O3 -fopenmp -pthread -lpthread Linux/addconfseq.o Linux/align.o Linux/alignpairflat.o Linux/allocflat.o Linux/alnalnsflat.o Linux/alnmsasflat.o Linux/alnmsasflat3.o Linux/alpha.o Linux/alpha3.o Linux/assertsameseqs.o Linux/buildposterior3flat.o Linux/buildpostflat.o Linux/bwdflat3.o Linux/calcalnflat.o Linux/calcalnscoreflat.o Linux/calcalnscoresparse.o Linux/calcposteriorflat.o Linux/colscoreefa.o Linux/consflat.o Linux/conspairflat.o Linux/defaulthmmparams.o Linux/derep.o Linux/diagbox.o Linux/disperse.o Linux/dividetree.o Linux/eacluster.o Linux/eadistmx.o Linux/eadistmxmsas.o Linux/eesort.o Linux/efabestcols.o Linux/efabestconf.o Linux/efaexplode.o Linux/efastats.o Linux/ensemble.o Linux/fa2efa.o Linux/fasta.o Linux/fasta2.o Linux/fwdflat3.o Linux/getconsseq.o Linux/getpairs.o Linux/getpostpairsalignedflat.o Linux/globalinputms.o Linux/guidetreejoinorder.o Linux/heatmapcolors.o Linux/help.o Linux/hmmdump.o Linux/hmmparams.o Linux/jalview.o Linux/jointrees.o Linux/letterconf.o Linux/letterconfhtml.o Linux/logaln.o Linux/logdistmx.o Linux/logmx.o Linux/main.o Linux/make_a2m.o Linux/maxcc.o Linux/mpcflat.o Linux/msa.o Linux/msa2.o Linux/msastats.o Linux/multisequence.o Linux/mysparsemx.o Linux/myutils.o Linux/pairhmm.o Linux/permutetree.o Linux/perturbhmm.o Linux/pprog.o Linux/pprog2.o Linux/pprogt.o Linux/probcons.o Linux/progalnflat.o Linux/project.o Linux/qscore.o Linux/qscore2.o Linux/qscoreefa.o Linux/qscorer.o Linux/quarts.o Linux/randomchaintree.o Linux/refineflat.o Linux/relabel.o Linux/relaxflat.o Linux/resample.o Linux/seb8.o Linux/seq.o Linux/sequence.o Linux/setprobconsparams.o Linux/stripgappycols.o Linux/stripgappyrows.o Linux/super4.o Linux/super5.o Linux/testfb.o Linux/testlog.o Linux/testscoretype.o Linux/textfile.o Linux/totalprobflat.o Linux/tracebackflat.o Linux/transaln.o Linux/transq.o Linux/tree.o Linux/tree2.o Linux/tree4.o Linux/treefromfile.o Linux/treeperm.o Linux/treesplitter.o Linux/treesubsetnodes.o Linux/treetofile.o Linux/trimtoref.o Linux/trimtorefefa.o Linux/uclust.o Linux/upgma5.o Linux/usage.o Linux/usorter.o -o Linux/muscle # Warning: do not add -d option to strip, this is not portable #strip Linux/muscle make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' dh_auto_test -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=src dh_prep -O--sourcedirectory=src dh_auto_install --destdir=debian/muscle/ -O--sourcedirectory=src dh_install -O--sourcedirectory=src dh_installdocs -O--sourcedirectory=src dh_installchangelogs -O--sourcedirectory=src dh_installexamples -O--sourcedirectory=src dh_installman -O--sourcedirectory=src dh_installsystemduser -O--sourcedirectory=src dh_perl -O--sourcedirectory=src dh_link -O--sourcedirectory=src dh_strip_nondeterminism -O--sourcedirectory=src dh_compress -O--sourcedirectory=src dh_fixperms -O--sourcedirectory=src dh_missing -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src a787baa8ba94a614c40c806039f119b23d5f0660 dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -O--sourcedirectory=src dh_gencontrol -O--sourcedirectory=src dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing muscle (in debian/muscle); do_strip: , oemstrip: pkgstriptranslations: processing muscle-dbgsym (in debian/.debhelper/muscle/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/muscle/dbgsym-root/DEBIAN/control, package muscle-dbgsym, directory debian/.debhelper/muscle/dbgsym-root dpkg-deb: building package 'muscle-dbgsym' in 'debian/.debhelper/scratch-space/build-muscle/muscle-dbgsym_5.1.0-1_amd64.deb'. pkgstripfiles: processing control file: debian/muscle/DEBIAN/control, package muscle, directory debian/muscle pkgstripfiles: Running PNG optimization (using 4 cpus) for package muscle ... pkgstripfiles: No PNG files. dpkg-deb: building package 'muscle' in '../muscle_5.1.0-1_amd64.deb'. Renaming muscle-dbgsym_5.1.0-1_amd64.deb to muscle-dbgsym_5.1.0-1_amd64.ddeb dpkg-genbuildinfo --build=binary -O../muscle_5.1.0-1_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../muscle_5.1.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-01-12T17:20:28Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ muscle_5.1.0-1_amd64.changes: ----------------------------- Format: 1.8 Date: Sat, 05 Nov 2022 19:45:38 +0100 Source: muscle Binary: muscle Built-For-Profiles: noudeb Architecture: amd64 Version: 1:5.1.0-1 Distribution: lunar-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Lance Lin Description: muscle - Multiple alignment program of protein sequences Changes: muscle (1:5.1.0-1) unstable; urgency=medium . * Team upload. . [ Charles Plessy ] * License is GPL-3 . [ Lance Lin ] * Standards-Version: 4.6.1 (routine-update) * Remove trailing whitespace in debian/control (routine-update) * d/patches/makefile.patch: Refresh patch to match new source Checksums-Sha1: beb1f908ade9692384a4c0ecf6d9b198c23def12 3433092 muscle-dbgsym_5.1.0-1_amd64.ddeb 213a7a0b27c2ba72f6c9df8dd3ce182e97b423f7 5685 muscle_5.1.0-1_amd64.buildinfo 048e4ac986b9292a537d02e49a123d9de2218368 228744 muscle_5.1.0-1_amd64.deb Checksums-Sha256: f7735354631449cbdbc338b7a36640423bc6f6f1687d1d8ac443ac5a73871d9f 3433092 muscle-dbgsym_5.1.0-1_amd64.ddeb a246ffff8c25a07b58ebf73510ad8b8c522c68ea9bd9d7afbbdd183856c43337 5685 muscle_5.1.0-1_amd64.buildinfo 9c7470191312e448929c8cedc530db2be2cb6b405d1bc2a91f63eb3d2c8c7f87 228744 muscle_5.1.0-1_amd64.deb Files: 475991923e3f610e281c82adc064215c 3433092 debug optional muscle-dbgsym_5.1.0-1_amd64.ddeb 7f3ff375a1cad8d39928c70bcd49ff7d 5685 science optional muscle_5.1.0-1_amd64.buildinfo 561034d1fc403ba07641737e99f7274f 228744 science optional muscle_5.1.0-1_amd64.deb /<>/muscle_5.1.0-1_amd64.changes.new could not be renamed to /<>/muscle_5.1.0-1_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: muscle Binary: muscle muscle-dbgsym Architecture: amd64 Version: 1:5.1.0-1 Checksums-Md5: 475991923e3f610e281c82adc064215c 3433092 muscle-dbgsym_5.1.0-1_amd64.ddeb 561034d1fc403ba07641737e99f7274f 228744 muscle_5.1.0-1_amd64.deb Checksums-Sha1: beb1f908ade9692384a4c0ecf6d9b198c23def12 3433092 muscle-dbgsym_5.1.0-1_amd64.ddeb 048e4ac986b9292a537d02e49a123d9de2218368 228744 muscle_5.1.0-1_amd64.deb Checksums-Sha256: f7735354631449cbdbc338b7a36640423bc6f6f1687d1d8ac443ac5a73871d9f 3433092 muscle-dbgsym_5.1.0-1_amd64.ddeb 9c7470191312e448929c8cedc530db2be2cb6b405d1bc2a91f63eb3d2c8c7f87 228744 muscle_5.1.0-1_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Thu, 12 Jan 2023 17:20:28 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-10), autotools-dev (= 20220109.1), base-files (= 12.3ubuntu1), base-passwd (= 3.6.1), bash (= 5.2.15-2ubuntu1), binutils (= 2.39.90.20221231-1ubuntu1), binutils-common (= 2.39.90.20221231-1ubuntu1), binutils-x86-64-linux-gnu (= 2.39.90.20221231-1ubuntu1), bsdextrautils (= 2.38.1-4ubuntu1), bsdutils (= 1:2.38.1-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), coreutils (= 9.1-1ubuntu2), cpp (= 4:12.2.0-1ubuntu1), cpp-12 (= 12.2.0-12ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-9ubuntu1), debconf (= 1.5.82), debhelper (= 13.10.1ubuntu1), debianutils (= 5.7-0.4), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-2), diffutils (= 1:3.8-3), dpkg (= 1.21.17ubuntu5), dpkg-dev (= 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2.38.1-4ubuntu1), libxml2 (= 2.9.14+dfsg-1.1), libzstd1 (= 1.5.2+dfsg2-3), linux-libc-dev (= 5.19.0-23.24), login (= 1:4.13+dfsg1-1ubuntu1), lto-disabled-list (= 37), m4 (= 1.4.19-2), make (= 4.3-4.1build1), man-db (= 2.11.2-1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.4-1), ncurses-bin (= 6.4-1), patch (= 2.7.6-7build2), perl (= 5.36.0-7), perl-base (= 5.36.0-7), perl-modules-5.36 (= 5.36.0-7), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.05-7ubuntu1), tar (= 1.34+dfsg-1.1), usrmerge (= 33ubuntu1), util-linux (= 2.38.1-4ubuntu1), util-linux-extra (= 2.38.1-4ubuntu1), xz-utils (= 5.4.0-0.1), zlib1g (= 1:1.2.13.dfsg-1ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1667673938" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ muscle_5.1.0-1_amd64.deb ------------------------ new Debian package, version 2.0. size 228744 bytes: control archive=1375 bytes. 1973 bytes, 43 lines control 399 bytes, 6 lines md5sums Package: muscle Version: 1:5.1.0-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 538 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libgomp1 (>= 4.9), libstdc++6 (>= 11) Enhances: seaview, t-coffee Conflicts: muscle-doc Replaces: muscle-doc Provides: muscle-doc Section: science Priority: optional Homepage: https://www.drive5.com/muscle/ Description: Multiple alignment program of protein sequences MUSCLE is a multiple alignment program for protein sequences. MUSCLE stands for multiple sequence comparison by log-expectation. In the authors tests, MUSCLE achieved the highest scores of all tested programs on several alignment accuracy benchmarks, and is also one of the fastest programs out there. . Muscle v5 is a major re-write of MUSCLE based on new algorithms. . Users should be aware that command line arguments compared to version 3.x of MUSCLE have changed! . Highest accuracy, scalable to thousands of sequences . Compared to previous versions, Muscle v5 is much more accurate, is often faster, and scales to much larger datasets. At the time of writing (late 2021), Muscle v5 has the highest scores on multiple alignment benchmarks including Balibase, Bralibase, Prefab and Balifam. It can align tens of thousands of sequences with high accuracy on a low-cost commodity computer (say, an 8-core Intel CPU with 32 Gb RAM). On large datasets, Muscle v5 is 20-30% more accurate than MAFFT and Clustal-Omega. . Alignment ensembles . Muscle v5 can generate ensembles of high-accuracy alternative alignments. All replicates have equal average accuracy on benchmark test, including the MSA made with default parameters. By comparing results of downstream analysis (trees, structure prediction...) on different replicates, you can assess the effects of alignment errors on your study. drwxr-xr-x root/root 0 2022-11-05 18:45 ./ drwxr-xr-x root/root 0 2022-11-05 18:45 ./usr/ drwxr-xr-x root/root 0 2022-11-05 18:45 ./usr/bin/ -rwxr-xr-x root/root 530776 2022-11-05 18:45 ./usr/bin/muscle drwxr-xr-x root/root 0 2022-11-05 18:45 ./usr/share/ drwxr-xr-x root/root 0 2022-11-05 18:45 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-11-05 18:45 ./usr/share/doc/muscle/ -rw-r--r-- root/root 717 2022-11-05 18:45 ./usr/share/doc/muscle/NEWS.Debian.gz -rw-r--r-- root/root 760 2022-11-05 18:45 ./usr/share/doc/muscle/changelog.Debian.gz -rw-r--r-- root/root 1679 2022-11-05 18:45 ./usr/share/doc/muscle/copyright drwxr-xr-x root/root 0 2022-11-05 18:45 ./usr/share/doc/muscle/examples/ -rw-r--r-- root/root 2269 2022-11-05 18:45 ./usr/share/doc/muscle/examples/example.fa drwxr-xr-x root/root 0 2022-11-05 18:45 ./usr/share/man/ drwxr-xr-x root/root 0 2022-11-05 18:45 ./usr/share/man/man1/ -rw-r--r-- root/root 1480 2022-11-05 18:45 ./usr/share/man/man1/muscle.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 130068 Build-Time: 47 Distribution: lunar-proposed Host Architecture: amd64 Install-Time: 5 Job: muscle_5.1.0-1.dsc Machine Architecture: amd64 Package: muscle Package-Time: 53 Source-Version: 1:5.1.0-1 Space: 130068 Status: successful Version: 1:5.1.0-1 -------------------------------------------------------------------------------- Finished at 2023-01-12T17:20:28Z Build needed 00:00:53, 130068k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-25478690 Scanning for processes to kill in build PACKAGEBUILD-25478690