https://launchpad.net/ubuntu/+source/muscle/1:5.1.0-1/+build/25478691 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-043 5.4.0-136-generic #153-Ubuntu SMP Thu Nov 24 15:59:04 UTC 2022 aarch64 Buildd toolchain package versions: launchpad-buildd_225~602~ubuntu20.04.1 python3-lpbuildd_225~602~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.6 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 12 Jan 17:19:36 ntpdate[3010]: adjust time server 10.211.37.1 offset -0.001760 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=arm64 PACKAGEBUILD-25478691 --image-type chroot /home/buildd/filecache-default/f16216f5497f1f0724e8a3a0f3bd4b5063e2189b Creating target for build PACKAGEBUILD-25478691 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=arm64 PACKAGEBUILD-25478691 Starting target for build PACKAGEBUILD-25478691 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=arm64 PACKAGEBUILD-25478691 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-25478691 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=arm64 PACKAGEBUILD-25478691 Updating target for build PACKAGEBUILD-25478691 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main arm64 Packages [1368 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe arm64 Packages [14.2 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5880 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 Packages [296 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [109 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe arm64 Packages [1157 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [427 kB] Fetched 24.5 MB in 43s (574 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be REMOVED: lsb-base* The following packages will be upgraded: adduser bash binutils binutils-aarch64-linux-gnu binutils-common coreutils cpp-12 debconf diffutils dpkg dpkg-dev g++-12 gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv libasan8 libatomic1 libbinutils libcap2 libcc1-0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdpkg-perl libgcc-12-dev libgcc-s1 libgomp1 libgprofng0 libhwasan0 libitm1 liblsan0 liblzma5 libmpfr6 libncurses6 libncursesw6 libpcre2-8-0 libperl5.36 libsqlite3-0 libssl3 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libtsan2 libubsan1 libudev1 libzstd1 linux-libc-dev ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.36 systemd systemd-sysv sysvinit-utils tzdata xz-utils zlib1g 65 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. Need to get 84.8 MB of archives. After this operation, 1241 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 bash arm64 5.2.15-2ubuntu1 [780 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 coreutils arm64 9.1-1ubuntu2 [1347 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 diffutils arm64 1:3.8-3 [172 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 liblzma5 arm64 5.4.0-0.1 [121 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 dpkg arm64 1.21.17ubuntu5 [1333 kB] Get:6 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 ncurses-bin arm64 6.4-1 [183 kB] Get:7 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libperl5.36 arm64 5.36.0-7 [4674 kB] Get:8 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 perl arm64 5.36.0-7 [235 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 perl-base arm64 5.36.0-7 [1726 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 perl-modules-5.36 all 5.36.0-7 [2984 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libcrypt-dev arm64 1:4.4.33-2 [118 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libcrypt1 arm64 1:4.4.33-2 [83.8 kB] Get:13 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 zlib1g arm64 1:1.2.13.dfsg-1ubuntu4 [59.3 kB] Get:14 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 ncurses-base all 6.4-1 [21.3 kB] Get:15 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 sysvinit-utils arm64 3.05-7ubuntu1 [25.8 kB] Get:16 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 systemd-sysv arm64 252.4-1ubuntu1 [11.4 kB] Get:17 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libcap2 arm64 1:2.66-3 [27.7 kB] Get:18 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 debconf all 1.5.82 [125 kB] Get:19 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libssl3 arm64 3.0.7-1ubuntu1 [1756 kB] Get:20 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libzstd1 arm64 1.5.2+dfsg2-3 [255 kB] Get:21 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 systemd arm64 252.4-1ubuntu1 [2904 kB] Get:22 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libsystemd-shared arm64 252.4-1ubuntu1 [1687 kB] Get:23 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libsystemd0 arm64 252.4-1ubuntu1 [321 kB] Get:24 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libcc1-0 arm64 12.2.0-12ubuntu1 [44.1 kB] Get:25 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libctf-nobfd0 arm64 2.39.90.20221231-1ubuntu1 [96.8 kB] Get:26 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libgprofng0 arm64 2.39.90.20221231-1ubuntu1 [793 kB] Get:27 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libctf0 arm64 2.39.90.20221231-1ubuntu1 [93.0 kB] Get:28 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 binutils-aarch64-linux-gnu arm64 2.39.90.20221231-1ubuntu1 [3150 kB] Get:29 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libbinutils arm64 2.39.90.20221231-1ubuntu1 [776 kB] Get:30 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 binutils-common arm64 2.39.90.20221231-1ubuntu1 [236 kB] Get:31 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 binutils arm64 2.39.90.20221231-1ubuntu1 [3214 B] Get:32 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libgomp1 arm64 12.2.0-12ubuntu1 [122 kB] Get:33 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libitm1 arm64 12.2.0-12ubuntu1 [27.9 kB] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libatomic1 arm64 12.2.0-12ubuntu1 [10.7 kB] Get:35 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libasan8 arm64 12.2.0-12ubuntu1 [2383 kB] Get:36 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 liblsan0 arm64 12.2.0-12ubuntu1 [1028 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libtsan2 arm64 12.2.0-12ubuntu1 [2514 kB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libubsan1 arm64 12.2.0-12ubuntu1 [957 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libhwasan0 arm64 12.2.0-12ubuntu1 [1109 kB] Get:40 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 gcc-12-base arm64 12.2.0-12ubuntu1 [19.4 kB] Get:41 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libstdc++6 arm64 12.2.0-12ubuntu1 [647 kB] Get:42 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 g++-12 arm64 12.2.0-12ubuntu1 [10.9 MB] Get:43 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libstdc++-12-dev arm64 12.2.0-12ubuntu1 [2154 kB] Get:44 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libgcc-12-dev arm64 12.2.0-12ubuntu1 [1157 kB] Get:45 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 gcc-12 arm64 12.2.0-12ubuntu1 [19.1 MB] Get:46 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 cpp-12 arm64 12.2.0-12ubuntu1 [9582 kB] Get:47 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libgcc-s1 arm64 12.2.0-12ubuntu1 [39.6 kB] Get:48 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libmpfr6 arm64 4.1.1-3 [243 kB] Get:49 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libpcre2-8-0 arm64 10.42-1 [210 kB] Get:50 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libncursesw6 arm64 6.4-1 [141 kB] Get:51 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libncurses6 arm64 6.4-1 [108 kB] Get:52 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libtinfo6 arm64 6.4-1 [98.4 kB] Get:53 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libudev1 arm64 252.4-1ubuntu1 [87.5 kB] Get:54 http://ftpmaster.internal/ubuntu lunar/main arm64 adduser all 3.129ubuntu1 [59.0 kB] Get:55 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 gpgv arm64 2.2.40-1ubuntu2 [133 kB] Get:56 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libsqlite3-0 arm64 3.40.1-1 [661 kB] Get:57 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 openssl arm64 3.0.7-1ubuntu1 [1159 kB] Get:58 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 tzdata all 2022g-2ubuntu1 [397 kB] Get:59 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 xz-utils arm64 5.4.0-0.1 [177 kB] Get:60 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 dpkg-dev all 1.21.17ubuntu5 [1070 kB] Get:61 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libdpkg-perl all 1.21.17ubuntu5 [247 kB] Get:62 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 gpg arm64 2.2.40-1ubuntu2 [509 kB] Get:63 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 gpgconf arm64 2.2.40-1ubuntu2 [92.5 kB] Get:64 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 gpg-agent arm64 2.2.40-1ubuntu2 [211 kB] Get:65 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 linux-libc-dev arm64 5.19.0-23.24 [1320 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 84.8 MB in 2min 10s (651 kB/s) (Reading database ... 13115 files and directories currently installed.) 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Setting up ncurses-base (6.4-1) ... dpkg: lsb-base: dependency problems, but removing anyway as you requested: sysvinit-utils depends on lsb-base (>= 11.0.0~). procps depends on lsb-base (>= 3.0-10). (Reading database ... 13114 files and directories currently installed.) Removing lsb-base (11.2ubuntu1) ... (Reading database ... 13106 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.05-7ubuntu1_arm64.deb ... Unpacking sysvinit-utils (3.05-7ubuntu1) over (3.04-1ubuntu1) ... Setting up sysvinit-utils (3.05-7ubuntu1) ... (Reading database ... 13109 files and directories currently installed.) Preparing to unpack .../systemd-sysv_252.4-1ubuntu1_arm64.deb ... Unpacking systemd-sysv (252.4-1ubuntu1) over (251.4-1ubuntu7) ... Preparing to unpack .../libcap2_1%3a2.66-3_arm64.deb ... Unpacking libcap2:arm64 (1:2.66-3) over (1:2.44-1build3) ... Setting up libcap2:arm64 (1:2.66-3) ... (Reading database ... 13112 files and directories currently installed.) 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Purging configuration files for lsb-base (11.2ubuntu1) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-25478691 arm64 lunar-proposed -c chroot:build-PACKAGEBUILD-25478691 --arch=arm64 --dist=lunar-proposed --nolog muscle_5.1.0-1.dsc Initiating build PACKAGEBUILD-25478691 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-136-generic #153-Ubuntu SMP Thu Nov 24 15:59:04 UTC 2022 aarch64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-043.buildd +==============================================================================+ | muscle 1:5.1.0-1 (arm64) Thu, 12 Jan 2023 17:23:12 +0000 | +==============================================================================+ Package: muscle Version: 1:5.1.0-1 Source Version: 1:5.1.0-1 Distribution: lunar-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-25478691/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/muscle-7yA4u3/resolver-MryMd6' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- muscle_5.1.0-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/muscle-7yA4u3/muscle-5.1.0' with '<>' I: NOTICE: Log filtering will replace 'build/muscle-7yA4u3' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), debhelper, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), debhelper, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [373 B] Get:5 copy:/<>/apt_archive ./ Packages [456 B] Fetched 1786 B in 0s (50.8 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu71 libmagic-mgc libmagic1 libpipeline1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu71 libmagic-mgc libmagic1 libpipeline1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy 0 upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 18.4 MB of archives. After this operation, 69.2 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [672 B] Get:2 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libelf1 arm64 0.188-2 [53.0 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main arm64 libicu71 arm64 71.1-3ubuntu1 [10.5 MB] Get:4 http://ftpmaster.internal/ubuntu lunar/main arm64 libxml2 arm64 2.9.14+dfsg-1.1 [722 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main arm64 bsdextrautils arm64 2.38.1-4ubuntu1 [69.1 kB] Get:6 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libmagic-mgc arm64 1:5.44-1 [291 kB] Get:7 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libmagic1 arm64 1:5.44-1 [84.1 kB] Get:8 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 file arm64 1:5.44-1 [21.8 kB] Get:9 http://ftpmaster.internal/ubuntu lunar/main arm64 gettext-base arm64 0.21-10 [36.5 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main arm64 libuchardet0 arm64 0.0.7-1build2 [77.3 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main arm64 groff-base arm64 1.22.4-9 [899 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main arm64 libpipeline1 arm64 1.5.7-1 [23.3 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main arm64 man-db arm64 2.11.2-1 [1212 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main arm64 m4 arm64 1.4.19-2 [239 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main arm64 autoconf all 2.71-2 [338 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main arm64 autotools-dev all 20220109.1 [44.9 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main arm64 automake all 1:1.16.5-1.3 [558 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main arm64 autopoint all 0.21-10 [421 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main arm64 libdebhelper-perl all 13.10.1ubuntu1 [67.1 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main arm64 libtool all 2.4.7-5 [166 kB] Get:21 http://ftpmaster.internal/ubuntu lunar/main arm64 dh-autoreconf all 20 [16.1 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:23 http://ftpmaster.internal/ubuntu lunar/main arm64 libsub-override-perl all 0.09-4 [8706 B] Get:24 http://ftpmaster.internal/ubuntu lunar/main arm64 libfile-stripnondeterminism-perl all 1.13.0-2 [18.2 kB] Get:25 http://ftpmaster.internal/ubuntu lunar/main arm64 dh-strip-nondeterminism all 1.13.0-2 [5308 B] Get:26 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libdw1 arm64 0.188-2 [247 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main arm64 debugedit arm64 1:5.0-5 [45.9 kB] Get:28 http://ftpmaster.internal/ubuntu lunar/main arm64 dwz arm64 0.15-1 [110 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main arm64 gettext arm64 0.21-10 [842 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] Get:32 http://ftpmaster.internal/ubuntu lunar/main arm64 debhelper all 13.10.1ubuntu1 [924 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.4 MB in 7s (2651 kB/s) Selecting previously unselected package libelf1:arm64. (Reading database ... 13133 files and directories currently installed.) Preparing to unpack .../00-libelf1_0.188-2_arm64.deb ... Unpacking libelf1:arm64 (0.188-2) ... Selecting previously unselected package libicu71:arm64. Preparing to unpack .../01-libicu71_71.1-3ubuntu1_arm64.deb ... Unpacking libicu71:arm64 (71.1-3ubuntu1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../02-libxml2_2.9.14+dfsg-1.1_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../03-bsdextrautils_2.38.1-4ubuntu1_arm64.deb ... Unpacking bsdextrautils (2.38.1-4ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.44-1_arm64.deb ... Unpacking libmagic-mgc (1:5.44-1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../05-libmagic1_1%3a5.44-1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-1) ... 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Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../31-sbuild-build-depends-main-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libicu71:arm64 (71.1-3ubuntu1) ... Setting up bsdextrautils (2.38.1-4ubuntu1) ... Setting up libmagic-mgc (1:5.44-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.10.1ubuntu1) ... Setting up libmagic1:arm64 (1:5.44-1) ... Setting up gettext-base (0.21-10) ... Setting up m4 (1.4.19-2) ... Setting up file (1:5.44-1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-10) ... Setting up autoconf (2.71-2) ... Setting up libuchardet0:arm64 (0.0.7-1build2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:arm64 (0.188-2) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-2) ... Setting up libdw1:arm64 (0.188-2) ... Setting up gettext (0.21-10) ... Setting up libtool (2.4.7-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.0-2) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-9) ... Setting up debugedit (1:5.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up debhelper (13.10.1ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-136-generic #153-Ubuntu SMP Thu Nov 24 15:59:04 UTC 2022 arm64 (aarch64) Toolchain package versions: binutils_2.39.90.20221231-1ubuntu1 dpkg-dev_1.21.17ubuntu5 g++-12_12.2.0-12ubuntu1 gcc-12_12.2.0-12ubuntu1 libc6-dev_2.36-0ubuntu4 libstdc++-12-dev_12.2.0-12ubuntu1 libstdc++6_12.2.0-12ubuntu1 linux-libc-dev_5.19.0-23.24 Package versions: adduser_3.129ubuntu1 advancecomp_2.4-1 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.1 bash_5.2.15-2ubuntu1 binutils_2.39.90.20221231-1ubuntu1 binutils-aarch64-linux-gnu_2.39.90.20221231-1ubuntu1 binutils-common_2.39.90.20221231-1ubuntu1 bsdextrautils_2.38.1-4ubuntu1 bsdutils_1:2.38.1-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016ubuntu1 coreutils_9.1-1ubuntu2 cpp_4:12.2.0-1ubuntu1 cpp-12_12.2.0-12ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-9ubuntu1 debconf_1.5.82 debhelper_13.10.1ubuntu1 debianutils_5.7-0.4 debugedit_1:5.0-5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-3 dpkg_1.21.17ubuntu5 dpkg-dev_1.21.17ubuntu5 dwz_0.15-1 e2fsprogs_1.46.6~rc1-1ubuntu1 fakeroot_1.30.1-1ubuntu1 file_1:5.44-1 findutils_4.9.0-3ubuntu1 g++_4:12.2.0-1ubuntu1 g++-12_12.2.0-12ubuntu1 gcc_4:12.2.0-1ubuntu1 gcc-12_12.2.0-12ubuntu1 gcc-12-base_12.2.0-12ubuntu1 gettext_0.21-10 gettext-base_0.21-10 gpg_2.2.40-1ubuntu2 gpg-agent_2.2.40-1ubuntu2 gpgconf_2.2.40-1ubuntu2 gpgv_2.2.40-1ubuntu2 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1ubuntu1 hostname_3.23ubuntu2 init_1.65.2 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-2 libapparmor1_3.0.8-1ubuntu1 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan8_12.2.0-12ubuntu1 libassuan0_2.5.5-5 libatomic1_12.2.0-12ubuntu1 libattr1_1:2.5.1-3 libaudit-common_1:3.0.7-1ubuntu3 libaudit1_1:3.0.7-1ubuntu3 libbinutils_2.39.90.20221231-1ubuntu1 libblkid1_2.38.1-4ubuntu1 libbz2-1.0_1.0.8-5build1 libc-bin_2.36-0ubuntu4 libc-dev-bin_2.36-0ubuntu4 libc6_2.36-0ubuntu4 libc6-dev_2.36-0ubuntu4 libcap-ng0_0.8.3-1build1 libcap2_1:2.66-3 libcc1-0_12.2.0-12ubuntu1 libcom-err2_1.46.6~rc1-1ubuntu1 libcrypt-dev_1:4.4.33-2 libcrypt1_1:4.4.33-2 libcryptsetup12_2:2.5.0-6ubuntu3 libctf-nobfd0_2.39.90.20221231-1ubuntu1 libctf0_2.39.90.20221231-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264ubuntu1 libdebhelper-perl_13.10.1ubuntu1 libdevmapper1.02.1_2:1.02.185-1ubuntu1 libdpkg-perl_1.21.17ubuntu5 libdw1_0.188-2 libelf1_0.188-2 libext2fs2_1.46.6~rc1-1ubuntu1 libfakeroot_1.30.1-1ubuntu1 libfdisk1_2.38.1-4ubuntu1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.0-2 libgcc-12-dev_12.2.0-12ubuntu1 libgcc-s1_12.2.0-12ubuntu1 libgcrypt20_1.10.1-2ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1ubuntu1 libgnutls30_3.7.7-2ubuntu2 libgomp1_12.2.0-12ubuntu1 libgpg-error0_1.46-1 libgprofng0_2.39.90.20221231-1ubuntu1 libgssapi-krb5-2_1.20.1-1build1 libhogweed6_3.8.1-2 libhwasan0_12.2.0-12ubuntu1 libicu71_71.1-3ubuntu1 libidn2-0_2.3.3-1build1 libip4tc2_1.8.7-1ubuntu7 libisl23_0.25-1 libitm1_12.2.0-12ubuntu1 libjansson4_2.14-2 libjson-c5_0.16-2 libk5crypto3_1.20.1-1build1 libkeyutils1_1.6.3-2 libkmod2_30+20220905-1ubuntu1 libkrb5-3_1.20.1-1build1 libkrb5support0_1.20.1-1build1 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblsan0_12.2.0-12ubuntu1 liblz4-1_1.9.4-1 liblzma5_5.4.0-0.1 libmagic-mgc_1:5.44-1 libmagic1_1:5.44-1 libmd0_1.0.4-2 libmount1_2.38.1-4ubuntu1 libmpc3_1.3.1-1 libmpfr6_4.1.1-3 libncurses6_6.4-1 libncursesw6_6.4-1 libnettle8_3.8.1-2 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libp11-kit0_0.24.1-1ubuntu2 libpam-modules_1.5.2-5ubuntu1 libpam-modules-bin_1.5.2-5ubuntu1 libpam-runtime_1.5.2-5ubuntu1 libpam0g_1.5.2-5ubuntu1 libpcre2-8-0_10.42-1 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libpng16-16_1.6.39-2 libprocps8_2:3.3.17-7ubuntu1 libreadline8_8.2-1.2 libseccomp2_2.5.4-1ubuntu2 libselinux1_3.4-1build1 libsemanage-common_3.4-1build1 libsemanage2_3.4-1build1 libsepol2_3.4-2 libsmartcols1_2.38.1-4ubuntu1 libsqlite3-0_3.40.1-1 libss2_1.46.6~rc1-1ubuntu1 libssl3_3.0.7-1ubuntu1 libstdc++-12-dev_12.2.0-12ubuntu1 libstdc++6_12.2.0-12ubuntu1 libsub-override-perl_0.09-4 libsystemd-shared_252.4-1ubuntu1 libsystemd0_252.4-1ubuntu1 libtasn1-6_4.19.0-2 libtinfo6_6.4-1 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libtsan2_12.2.0-12ubuntu1 libubsan1_12.2.0-12ubuntu1 libuchardet0_0.0.7-1build2 libudev1_252.4-1ubuntu1 libunistring2_1.0-2 libuuid1_2.38.1-4ubuntu1 libxml2_2.9.14+dfsg-1.1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg2-3 linux-libc-dev_5.19.0-23.24 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-1ubuntu1 logsave_1.46.6~rc1-1ubuntu1 lto-disabled-list_37 m4_1.4.19-2 make_4.3-4.1build1 man-db_2.11.2-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-4ubuntu1 ncurses-base_6.4-1 ncurses-bin_6.4-1 openssl_3.0.7-1ubuntu1 optipng_0.7.7-2build1 passwd_1:4.13+dfsg1-1ubuntu1 patch_2.7.6-7build2 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-7 pinentry-curses_1.2.1-1ubuntu1 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:3.3.17-7ubuntu1 readline-common_8.2-1.2 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 systemd_252.4-1ubuntu1 systemd-sysv_252.4-1ubuntu1 sysvinit-utils_3.05-7ubuntu1 tar_1.34+dfsg-1.1 tzdata_2022g-2ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_33ubuntu1 util-linux_2.38.1-4ubuntu1 util-linux-extra_2.38.1-4ubuntu1 xz-utils_5.4.0-0.1 zlib1g_1:1.2.13.dfsg-1ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: muscle Binary: muscle Architecture: any Version: 1:5.1.0-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Charles Plessy , Andreas Tille Homepage: https://www.drive5.com/muscle/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/muscle Vcs-Git: https://salsa.debian.org/med-team/muscle.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), debhelper Package-List: muscle deb science optional arch=any Checksums-Sha1: 1c3932b45e1b3f21314d2d6c13927e2de32b580a 185437 muscle_5.1.0.orig.tar.gz 0bdc9bd1ebfa5ad850463e7a2335005188459415 9004 muscle_5.1.0-1.debian.tar.xz Checksums-Sha256: 2bba8b06e3ccabf6465fa26f459763b2029d7e7b9596881063e3aaba60d9e87d 185437 muscle_5.1.0.orig.tar.gz 7cf091b531f07184d31e2aeb23cf653f0580f782509f140f2847924f182dd15d 9004 muscle_5.1.0-1.debian.tar.xz Files: 32cf293ee6104e0aab36ac07b5ec951e 185437 muscle_5.1.0.orig.tar.gz aa7d5bae27ed7d3b04623968fe6c5269 9004 muscle_5.1.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmO/0zsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFxZw/+OOA0d0gnCpQVTIzufBcJ5NivYrIynm2I 2swKNgdAPxcA+JRvdYF2Ry66FoVioZ8t9iMvvmPvQRxeVYzaMha7m53cuY233xj6 hxbfW6RUbybNwRm50JMtnsE1JGZxSq0gFZWCSrpMlsfr82w2n5odqUqR5twpgay/ b19pWxhoNPbgZxXyZtKwo8vOUFQu50mbb4YyEDO3915k1w+2P16+e524pkyz76SP dkeNlXtdE9kLIRwYtFbIv/5Vb/jN3CQBNTOOPWrYVnOoEXEBe+AaQTgI2m/Xuljj ixnuUYvfoq+bJjjVnqqSCmLmfnsWrK/PvmyjsRWk4UwTTfQicqF/LLyGIOKdLuTw hybkc5zpy89Tm0kP7mV7RTJhwIxqEzqu2h7IcL/66t8GXFsAISnQwd4w2h9xd6NN XVj8D6Bg4f8Dq3bTezn9UMjvVTuspJK2D9rRlPXK+vhEdNiD+vKG29XqWUXXigYk RSC2qiux3qoruZOYe4VsisYgVfpji65qVqeJC1zdvyBNOsjR2WPjq9c8+zl6syCj 6wfhT9sjm9IWtCr2IyaZ5cQkiM6n+dW+2sQU47+sJk3J429TGqUGSn4tzTUfeL4n um7lMYcmnMOGIHACrYLCYK8ODhfQM9Z6V5V1pYy5dJ2nTCe1onE6SB7imyyiUpaj YXZhWUFBrvU= =eHyS -----END PGP SIGNATURE----- gpgv: Signature made Thu Jan 12 09:30:35 2023 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./muscle_5.1.0-1.dsc: no acceptable signature found dpkg-source: info: extracting muscle in /<> dpkg-source: info: unpacking muscle_5.1.0.orig.tar.gz dpkg-source: info: unpacking muscle_5.1.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-25478691 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-25478691 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-25478691 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package muscle dpkg-buildpackage: info: source version 1:5.1.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src cd src && make -j4 clean make[1]: Entering directory '/<>/src' rm -rf gitver.txt Linux/ make[1]: Leaving directory '/<>/src' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- 'GPP=$(CXX)' cd src && make -j4 "INSTALL=install --strip-program=true" GPP=\$\(CXX\) make[2]: Entering directory '/<>/src' bash ./gitver.bash mkdir -p Linux/ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/addconfseq.o addconfseq.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/align.o align.cpp Repo not found, git hash set to zero g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/alignpairflat.o alignpairflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/allocflat.o allocflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/alnalnsflat.o alnalnsflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/alnmsasflat.o alnmsasflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/alnmsasflat3.o alnmsasflat3.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/alpha.o alpha.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/alpha3.o alpha3.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/assertsameseqs.o assertsameseqs.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/buildposterior3flat.o buildposterior3flat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/buildpostflat.o buildpostflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/bwdflat3.o bwdflat3.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/calcalnflat.o calcalnflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/calcalnscoreflat.o calcalnscoreflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/calcalnscoresparse.o calcalnscoresparse.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/calcposteriorflat.o calcposteriorflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/colscoreefa.o colscoreefa.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/consflat.o consflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/conspairflat.o conspairflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/defaulthmmparams.o defaulthmmparams.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/derep.o derep.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/diagbox.o diagbox.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/disperse.o disperse.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/dividetree.o dividetree.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/eacluster.o eacluster.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/eadistmx.o eadistmx.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/eadistmxmsas.o eadistmxmsas.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/eesort.o eesort.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/efabestcols.o efabestcols.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/efabestconf.o efabestconf.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/efaexplode.o efaexplode.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/efastats.o efastats.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/ensemble.o ensemble.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/fa2efa.o fa2efa.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/fasta.o fasta.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/fasta2.o fasta2.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/fwdflat3.o fwdflat3.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/getconsseq.o getconsseq.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/getpairs.o getpairs.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/getpostpairsalignedflat.o getpostpairsalignedflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/globalinputms.o globalinputms.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/guidetreejoinorder.o guidetreejoinorder.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/heatmapcolors.o heatmapcolors.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/help.o help.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/hmmdump.o hmmdump.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/hmmparams.o hmmparams.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/jalview.o jalview.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/jointrees.o jointrees.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/letterconf.o letterconf.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/letterconfhtml.o letterconfhtml.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/logaln.o logaln.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/logdistmx.o logdistmx.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/logmx.o logmx.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/main.o main.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/make_a2m.o make_a2m.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/maxcc.o maxcc.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/mpcflat.o mpcflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/msa.o msa.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/msa2.o msa2.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/msastats.o msastats.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/multisequence.o multisequence.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/mysparsemx.o mysparsemx.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/myutils.o myutils.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/pairhmm.o pairhmm.cpp myutils.cpp:1626:31: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 1626 | Log(" built %s %s\n", __DATE__, __TIME__); | ^~~~~~~~ myutils.cpp:1626:41: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 1626 | Log(" built %s %s\n", __DATE__, __TIME__); | ^~~~~~~~ myutils.cpp:2092:37: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 2092 | fprintf(f, "Built %s %s\n", __DATE__, __TIME__); | ^~~~~~~~ myutils.cpp:2092:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 2092 | fprintf(f, "Built %s %s\n", __DATE__, __TIME__); | ^~~~~~~~ myutils.cpp:2115:37: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 2115 | fprintf(f, "Built %s %s\n", __DATE__, __TIME__); | ^~~~~~~~ myutils.cpp:2115:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 2115 | fprintf(f, "Built %s %s\n", __DATE__, __TIME__); | ^~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/permutetree.o permutetree.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/perturbhmm.o perturbhmm.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/pprog.o pprog.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/pprog2.o pprog2.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/pprogt.o pprogt.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/probcons.o probcons.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/progalnflat.o progalnflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/project.o project.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/qscore.o qscore.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/qscore2.o qscore2.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/qscoreefa.o qscoreefa.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/qscorer.o qscorer.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/quarts.o quarts.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/randomchaintree.o randomchaintree.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/refineflat.o refineflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/relabel.o relabel.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/relaxflat.o relaxflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/resample.o resample.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/seb8.o seb8.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/seq.o seq.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/sequence.o sequence.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/setprobconsparams.o setprobconsparams.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/stripgappycols.o stripgappycols.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/stripgappyrows.o stripgappyrows.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/super4.o super4.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/super5.o super5.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/testfb.o testfb.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/testlog.o testlog.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/testscoretype.o testscoretype.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/textfile.o textfile.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/totalprobflat.o totalprobflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/tracebackflat.o tracebackflat.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/transaln.o transaln.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/transq.o transq.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/tree.o tree.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/tree2.o tree2.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/tree4.o tree4.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/treefromfile.o treefromfile.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/treeperm.o treeperm.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/treesplitter.o treesplitter.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/treesubsetnodes.o treesubsetnodes.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/treetofile.o treetofile.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/trimtoref.o trimtoref.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/trimtorefefa.o trimtorefefa.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/uclust.o uclust.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/upgma5.o upgma5.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/usage.o usage.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/muscle-1:5.1.0-1 -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/usorter.o usorter.cpp g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -O3 -fopenmp -pthread -lpthread Linux/addconfseq.o Linux/align.o Linux/alignpairflat.o Linux/allocflat.o Linux/alnalnsflat.o Linux/alnmsasflat.o Linux/alnmsasflat3.o Linux/alpha.o Linux/alpha3.o Linux/assertsameseqs.o Linux/buildposterior3flat.o Linux/buildpostflat.o Linux/bwdflat3.o Linux/calcalnflat.o Linux/calcalnscoreflat.o Linux/calcalnscoresparse.o Linux/calcposteriorflat.o Linux/colscoreefa.o Linux/consflat.o Linux/conspairflat.o Linux/defaulthmmparams.o Linux/derep.o Linux/diagbox.o Linux/disperse.o Linux/dividetree.o Linux/eacluster.o Linux/eadistmx.o Linux/eadistmxmsas.o Linux/eesort.o Linux/efabestcols.o Linux/efabestconf.o Linux/efaexplode.o Linux/efastats.o Linux/ensemble.o Linux/fa2efa.o Linux/fasta.o Linux/fasta2.o Linux/fwdflat3.o Linux/getconsseq.o Linux/getpairs.o Linux/getpostpairsalignedflat.o Linux/globalinputms.o Linux/guidetreejoinorder.o Linux/heatmapcolors.o Linux/help.o Linux/hmmdump.o Linux/hmmparams.o Linux/jalview.o Linux/jointrees.o Linux/letterconf.o Linux/letterconfhtml.o Linux/logaln.o Linux/logdistmx.o Linux/logmx.o Linux/main.o Linux/make_a2m.o Linux/maxcc.o Linux/mpcflat.o Linux/msa.o Linux/msa2.o Linux/msastats.o Linux/multisequence.o Linux/mysparsemx.o Linux/myutils.o Linux/pairhmm.o Linux/permutetree.o Linux/perturbhmm.o Linux/pprog.o Linux/pprog2.o Linux/pprogt.o Linux/probcons.o Linux/progalnflat.o Linux/project.o Linux/qscore.o Linux/qscore2.o Linux/qscoreefa.o Linux/qscorer.o Linux/quarts.o Linux/randomchaintree.o Linux/refineflat.o Linux/relabel.o Linux/relaxflat.o Linux/resample.o Linux/seb8.o Linux/seq.o Linux/sequence.o Linux/setprobconsparams.o Linux/stripgappycols.o Linux/stripgappyrows.o Linux/super4.o Linux/super5.o Linux/testfb.o Linux/testlog.o Linux/testscoretype.o Linux/textfile.o Linux/totalprobflat.o Linux/tracebackflat.o Linux/transaln.o Linux/transq.o Linux/tree.o Linux/tree2.o Linux/tree4.o Linux/treefromfile.o Linux/treeperm.o Linux/treesplitter.o Linux/treesubsetnodes.o Linux/treetofile.o Linux/trimtoref.o Linux/trimtorefefa.o Linux/uclust.o Linux/upgma5.o Linux/usage.o Linux/usorter.o -o Linux/muscle # Warning: do not add -d option to strip, this is not portable #strip Linux/muscle make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' dh_auto_test -a -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src dh_auto_install --destdir=debian/muscle/ -a -O--sourcedirectory=src dh_install -a -O--sourcedirectory=src dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src dh_installexamples -a -O--sourcedirectory=src dh_installman -a -O--sourcedirectory=src dh_installsystemduser -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src dh_link -a -O--sourcedirectory=src dh_strip_nondeterminism -a -O--sourcedirectory=src dh_compress -a -O--sourcedirectory=src dh_fixperms -a -O--sourcedirectory=src dh_missing -a -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src 5756767f217518bbaa3fe474b44c4979dde73889 dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing muscle (in debian/muscle); do_strip: , oemstrip: pkgstriptranslations: processing muscle-dbgsym (in debian/.debhelper/muscle/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/muscle/DEBIAN/control, package muscle, directory debian/muscle pkgstripfiles: Running PNG optimization (using 4 cpus) for package muscle ... pkgstripfiles: No PNG files. dpkg-deb: building package 'muscle' in '../muscle_5.1.0-1_arm64.deb'. pkgstripfiles: processing control file: debian/.debhelper/muscle/dbgsym-root/DEBIAN/control, package muscle-dbgsym, directory debian/.debhelper/muscle/dbgsym-root dpkg-deb: building package 'muscle-dbgsym' in 'debian/.debhelper/scratch-space/build-muscle/muscle-dbgsym_5.1.0-1_arm64.deb'. Renaming muscle-dbgsym_5.1.0-1_arm64.deb to muscle-dbgsym_5.1.0-1_arm64.ddeb dpkg-genbuildinfo --build=any -O../muscle_5.1.0-1_arm64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../muscle_5.1.0-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-01-12T17:27:10Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ muscle_5.1.0-1_arm64.changes: ----------------------------- Format: 1.8 Date: Sat, 05 Nov 2022 19:45:38 +0100 Source: muscle Binary: muscle Built-For-Profiles: noudeb Architecture: arm64 Version: 1:5.1.0-1 Distribution: lunar-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Lance Lin Description: muscle - Multiple alignment program of protein sequences Changes: muscle (1:5.1.0-1) unstable; urgency=medium . * Team upload. . [ Charles Plessy ] * License is GPL-3 . [ Lance Lin ] * Standards-Version: 4.6.1 (routine-update) * Remove trailing whitespace in debian/control (routine-update) * d/patches/makefile.patch: Refresh patch to match new source Checksums-Sha1: 749e3524106d3c445f763d545fdfbf48982fabe6 3334836 muscle-dbgsym_5.1.0-1_arm64.ddeb 842cc23aa2aed6199645f6126e859cb24caca1f9 5684 muscle_5.1.0-1_arm64.buildinfo 44cb27256b7a704cc96e1b55fae22c86073fe5d0 213872 muscle_5.1.0-1_arm64.deb Checksums-Sha256: 70d15207d054b46847ed74cbee9e6524d83988c765f5530152a9d00659d18f07 3334836 muscle-dbgsym_5.1.0-1_arm64.ddeb 3c00e3a703f84a62eae465fecfd75bb6fed82f76aed4e28e2628948282184fbd 5684 muscle_5.1.0-1_arm64.buildinfo 55b6835ea34d6145683e7f4b213dd548c5b5234ef4172c604ba198fbabf898e6 213872 muscle_5.1.0-1_arm64.deb Files: 8df304b2eba9a744a953b554a98d061b 3334836 debug optional muscle-dbgsym_5.1.0-1_arm64.ddeb 65b10f85d324c9670791e258aaf44a13 5684 science optional muscle_5.1.0-1_arm64.buildinfo 6d65c25832f3a57a248e4784e704ed1c 213872 science optional muscle_5.1.0-1_arm64.deb /<>/muscle_5.1.0-1_arm64.changes.new could not be renamed to /<>/muscle_5.1.0-1_arm64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: muscle Binary: muscle muscle-dbgsym Architecture: arm64 Version: 1:5.1.0-1 Checksums-Md5: 8df304b2eba9a744a953b554a98d061b 3334836 muscle-dbgsym_5.1.0-1_arm64.ddeb 6d65c25832f3a57a248e4784e704ed1c 213872 muscle_5.1.0-1_arm64.deb Checksums-Sha1: 749e3524106d3c445f763d545fdfbf48982fabe6 3334836 muscle-dbgsym_5.1.0-1_arm64.ddeb 44cb27256b7a704cc96e1b55fae22c86073fe5d0 213872 muscle_5.1.0-1_arm64.deb Checksums-Sha256: 70d15207d054b46847ed74cbee9e6524d83988c765f5530152a9d00659d18f07 3334836 muscle-dbgsym_5.1.0-1_arm64.ddeb 55b6835ea34d6145683e7f4b213dd548c5b5234ef4172c604ba198fbabf898e6 213872 muscle_5.1.0-1_arm64.deb Build-Origin: Ubuntu Build-Architecture: arm64 Build-Date: Thu, 12 Jan 2023 17:27:09 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-10), autotools-dev (= 20220109.1), base-files (= 12.3ubuntu1), base-passwd (= 3.6.1), bash (= 5.2.15-2ubuntu1), binutils (= 2.39.90.20221231-1ubuntu1), binutils-aarch64-linux-gnu (= 2.39.90.20221231-1ubuntu1), binutils-common (= 2.39.90.20221231-1ubuntu1), bsdextrautils (= 2.38.1-4ubuntu1), bsdutils (= 1:2.38.1-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), coreutils (= 9.1-1ubuntu2), cpp (= 4:12.2.0-1ubuntu1), cpp-12 (= 12.2.0-12ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-9ubuntu1), debconf (= 1.5.82), debhelper (= 13.10.1ubuntu1), debianutils (= 5.7-0.4), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-2), diffutils (= 1:3.8-3), dpkg (= 1.21.17ubuntu5), dpkg-dev (= 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2.38.1-4ubuntu1), libxml2 (= 2.9.14+dfsg-1.1), libzstd1 (= 1.5.2+dfsg2-3), linux-libc-dev (= 5.19.0-23.24), login (= 1:4.13+dfsg1-1ubuntu1), lto-disabled-list (= 37), m4 (= 1.4.19-2), make (= 4.3-4.1build1), man-db (= 2.11.2-1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.4-1), ncurses-bin (= 6.4-1), patch (= 2.7.6-7build2), perl (= 5.36.0-7), perl-base (= 5.36.0-7), perl-modules-5.36 (= 5.36.0-7), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.05-7ubuntu1), tar (= 1.34+dfsg-1.1), usrmerge (= 33ubuntu1), util-linux (= 2.38.1-4ubuntu1), util-linux-extra (= 2.38.1-4ubuntu1), xz-utils (= 5.4.0-0.1), zlib1g (= 1:1.2.13.dfsg-1ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1667673938" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ muscle_5.1.0-1_arm64.deb ------------------------ new Debian package, version 2.0. size 213872 bytes: control archive=1374 bytes. 1973 bytes, 43 lines control 399 bytes, 6 lines md5sums Package: muscle Version: 1:5.1.0-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 534 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libgomp1 (>= 4.9), libstdc++6 (>= 11) Enhances: seaview, t-coffee Conflicts: muscle-doc Replaces: muscle-doc Provides: muscle-doc Section: science Priority: optional Homepage: https://www.drive5.com/muscle/ Description: Multiple alignment program of protein sequences MUSCLE is a multiple alignment program for protein sequences. MUSCLE stands for multiple sequence comparison by log-expectation. In the authors tests, MUSCLE achieved the highest scores of all tested programs on several alignment accuracy benchmarks, and is also one of the fastest programs out there. . Muscle v5 is a major re-write of MUSCLE based on new algorithms. . Users should be aware that command line arguments compared to version 3.x of MUSCLE have changed! . Highest accuracy, scalable to thousands of sequences . Compared to previous versions, Muscle v5 is much more accurate, is often faster, and scales to much larger datasets. At the time of writing (late 2021), Muscle v5 has the highest scores on multiple alignment benchmarks including Balibase, Bralibase, Prefab and Balifam. It can align tens of thousands of sequences with high accuracy on a low-cost commodity computer (say, an 8-core Intel CPU with 32 Gb RAM). On large datasets, Muscle v5 is 20-30% more accurate than MAFFT and Clustal-Omega. . Alignment ensembles . Muscle v5 can generate ensembles of high-accuracy alternative alignments. All replicates have equal average accuracy on benchmark test, including the MSA made with default parameters. By comparing results of downstream analysis (trees, structure prediction...) on different replicates, you can assess the effects of alignment errors on your study. drwxr-xr-x root/root 0 2022-11-05 18:45 ./ drwxr-xr-x root/root 0 2022-11-05 18:45 ./usr/ drwxr-xr-x root/root 0 2022-11-05 18:45 ./usr/bin/ -rwxr-xr-x root/root 526456 2022-11-05 18:45 ./usr/bin/muscle drwxr-xr-x root/root 0 2022-11-05 18:45 ./usr/share/ drwxr-xr-x root/root 0 2022-11-05 18:45 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-11-05 18:45 ./usr/share/doc/muscle/ -rw-r--r-- root/root 717 2022-11-05 18:45 ./usr/share/doc/muscle/NEWS.Debian.gz -rw-r--r-- root/root 760 2022-11-05 18:45 ./usr/share/doc/muscle/changelog.Debian.gz -rw-r--r-- root/root 1679 2022-11-05 18:45 ./usr/share/doc/muscle/copyright drwxr-xr-x root/root 0 2022-11-05 18:45 ./usr/share/doc/muscle/examples/ -rw-r--r-- root/root 2269 2022-11-05 18:45 ./usr/share/doc/muscle/examples/example.fa drwxr-xr-x root/root 0 2022-11-05 18:45 ./usr/share/man/ drwxr-xr-x root/root 0 2022-11-05 18:45 ./usr/share/man/man1/ -rw-r--r-- root/root 1480 2022-11-05 18:45 ./usr/share/man/man1/muscle.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: 129344 Build-Time: 217 Distribution: lunar-proposed Host Architecture: arm64 Install-Time: 18 Job: muscle_5.1.0-1.dsc Machine Architecture: arm64 Package: muscle Package-Time: 238 Source-Version: 1:5.1.0-1 Space: 129344 Status: successful Version: 1:5.1.0-1 -------------------------------------------------------------------------------- Finished at 2023-01-12T17:27:10Z Build needed 00:03:58, 129344k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=arm64 PACKAGEBUILD-25478691 Scanning for processes to kill in build PACKAGEBUILD-25478691