https://launchpad.net/ubuntu/+source/nanopolish/0.14.0-1ubuntu1/+build/25524223 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos01-ppc64el-018 5.4.0-137-generic #154-Ubuntu SMP Thu Jan 5 17:03:14 UTC 2023 ppc64le Buildd toolchain package versions: launchpad-buildd_228~614~ubuntu20.04.1 python3-lpbuildd_228~614~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.8 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 26 Jan 17:31:57 ntpdate[1928]: adjust time server 10.211.37.1 offset -0.003237 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=ppc64el PACKAGEBUILD-25524223 --image-type chroot /home/buildd/filecache-default/7984b9498478de1d58b749dc057a3cf5e3226d68 Creating target for build PACKAGEBUILD-25524223 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=ppc64el PACKAGEBUILD-25524223 Starting target for build PACKAGEBUILD-25524223 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=ppc64el PACKAGEBUILD-25524223 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-25524223 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=ppc64el PACKAGEBUILD-25524223 Updating target for build PACKAGEBUILD-25524223 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main ppc64el Packages [1335 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [508 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe ppc64el Packages [14.6 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5890 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el Packages [177 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [67.0 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el Packages [882 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [382 kB] Fetched 24.4 MB in 5s (5387 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: adduser advancecomp apt bash binutils binutils-common binutils-powerpc64le-linux-gnu coreutils cpp-12 debconf diffutils dpkg dpkg-dev fakeroot g++-12 gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv libacl1 libapt-pkg6.0 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libcap2 libcc1-0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libfakeroot libgcc-12-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libitm1 liblsan0 liblzma5 libmpfr6 libncurses6 libncursesw6 libp11-kit0 libpcre2-8-0 libperl5.36 libquadmath0 libreadline8 libselinux1 libsemanage-common libsemanage2 libsqlite3-0 libssl3 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libtsan2 libubsan1 libudev1 libzstd1 linux-libc-dev lsb-base ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.36 pkgbinarymangler readline-common sed sensible-utils systemd systemd-sysv sysvinit-utils tzdata xz-utils zlib1g 86 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 93.9 MB of archives. After this operation, 2694 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu lunar/main ppc64el bash ppc64el 5.2.15-2ubuntu1 [956 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el coreutils ppc64el 9.1-1ubuntu2 [1508 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main ppc64el diffutils ppc64el 1:3.8-3 [196 kB] Get:4 http://ftpmaster.internal/ubuntu lunar/main ppc64el liblzma5 ppc64el 5.4.1-0.0 [154 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main ppc64el libcc1-0 ppc64el 12.2.0-14ubuntu1 [48.9 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main ppc64el libctf0 ppc64el 2.40-2ubuntu1 [110 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main ppc64el libctf-nobfd0 ppc64el 2.40-2ubuntu1 [109 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.40-2ubuntu1 [2446 kB] Get:9 http://ftpmaster.internal/ubuntu lunar/main ppc64el libbinutils ppc64el 2.40-2ubuntu1 [728 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main ppc64el binutils-common ppc64el 2.40-2ubuntu1 [226 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main ppc64el binutils ppc64el 2.40-2ubuntu1 [3082 B] Get:12 http://ftpmaster.internal/ubuntu lunar/main ppc64el gcc-12-base ppc64el 12.2.0-14ubuntu1 [19.3 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main ppc64el libgcc-s1 ppc64el 12.2.0-14ubuntu1 [34.0 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main ppc64el libgomp1 ppc64el 12.2.0-14ubuntu1 [139 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main ppc64el libitm1 ppc64el 12.2.0-14ubuntu1 [32.6 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main ppc64el libatomic1 ppc64el 12.2.0-14ubuntu1 [10.6 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main ppc64el libasan8 ppc64el 12.2.0-14ubuntu1 [2450 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main ppc64el liblsan0 ppc64el 12.2.0-14ubuntu1 [1082 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main ppc64el libtsan2 ppc64el 12.2.0-14ubuntu1 [2568 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main ppc64el libubsan1 ppc64el 12.2.0-14ubuntu1 [992 kB] Get:21 http://ftpmaster.internal/ubuntu lunar/main ppc64el libquadmath0 ppc64el 12.2.0-14ubuntu1 [155 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main ppc64el g++-12 ppc64el 12.2.0-14ubuntu1 [11.4 MB] Get:23 http://ftpmaster.internal/ubuntu lunar/main ppc64el libstdc++-12-dev ppc64el 12.2.0-14ubuntu1 [2289 kB] Get:24 http://ftpmaster.internal/ubuntu lunar/main ppc64el libgcc-12-dev ppc64el 12.2.0-14ubuntu1 [1512 kB] Get:25 http://ftpmaster.internal/ubuntu lunar/main ppc64el gcc-12 ppc64el 12.2.0-14ubuntu1 [19.8 MB] Get:26 http://ftpmaster.internal/ubuntu lunar/main ppc64el cpp-12 ppc64el 12.2.0-14ubuntu1 [10.0 MB] Get:27 http://ftpmaster.internal/ubuntu lunar/main ppc64el libstdc++6 ppc64el 12.2.0-14ubuntu1 [787 kB] Get:28 http://ftpmaster.internal/ubuntu lunar/main ppc64el zlib1g ppc64el 1:1.2.13.dfsg-1ubuntu4 [70.1 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main ppc64el libmpfr6 ppc64el 4.2.0-1 [343 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main ppc64el libzstd1 ppc64el 1.5.2+dfsg2-3 [354 kB] Get:31 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libgcrypt20 ppc64el 1.10.1-3ubuntu1 [718 kB] Get:32 http://ftpmaster.internal/ubuntu lunar/main ppc64el libacl1 ppc64el 2.3.1-3 [20.4 kB] Get:33 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libaudit-common all 1:3.0.7-1.1 [5108 B] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libaudit1 ppc64el 1:3.0.7-1.1 [50.8 kB] Get:35 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libcap2 ppc64el 1:2.66-3ubuntu1 [33.2 kB] Get:36 http://ftpmaster.internal/ubuntu lunar/main ppc64el libcrypt-dev ppc64el 1:4.4.33-2 [143 kB] Get:37 http://ftpmaster.internal/ubuntu lunar/main ppc64el libcrypt1 ppc64el 1:4.4.33-2 [106 kB] Get:38 http://ftpmaster.internal/ubuntu lunar/main ppc64el libpcre2-8-0 ppc64el 10.42-1 [256 kB] Get:39 http://ftpmaster.internal/ubuntu lunar/main ppc64el libselinux1 ppc64el 3.4-1build2 [96.5 kB] Get:40 http://ftpmaster.internal/ubuntu lunar/main ppc64el libperl5.36 ppc64el 5.36.0-7 [4848 kB] Get:41 http://ftpmaster.internal/ubuntu lunar/main ppc64el perl ppc64el 5.36.0-7 [235 kB] Get:42 http://ftpmaster.internal/ubuntu lunar/main ppc64el perl-base ppc64el 5.36.0-7 [1855 kB] Get:43 http://ftpmaster.internal/ubuntu lunar/main ppc64el perl-modules-5.36 all 5.36.0-7 [2984 kB] Get:44 http://ftpmaster.internal/ubuntu lunar/main ppc64el libdb5.3 ppc64el 5.3.28+dfsg2-1 [847 kB] Get:45 http://ftpmaster.internal/ubuntu lunar/main ppc64el debconf all 1.5.82 [125 kB] Get:46 http://ftpmaster.internal/ubuntu lunar/main ppc64el libssl3 ppc64el 3.0.7-1ubuntu1 [2133 kB] Get:47 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el systemd-sysv ppc64el 252.4-1ubuntu1 [11.4 kB] Get:48 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el systemd ppc64el 252.4-1ubuntu1 [3199 kB] Get:49 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libsystemd-shared ppc64el 252.4-1ubuntu1 [1964 kB] Get:50 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libp11-kit0 ppc64el 0.24.1-2ubuntu1 [258 kB] Get:51 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libsystemd0 ppc64el 252.4-1ubuntu1 [406 kB] Get:52 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libudev1 ppc64el 252.4-1ubuntu1 [111 kB] Get:53 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libapt-pkg6.0 ppc64el 2.5.5 [1016 kB] Get:54 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el dpkg ppc64el 1.21.18ubuntu3 [1407 kB] Get:55 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el ncurses-bin ppc64el 6.4-2 [196 kB] Get:56 http://ftpmaster.internal/ubuntu lunar/main ppc64el sed ppc64el 4.9-1 [208 kB] Get:57 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el ncurses-base all 6.4-2 [21.3 kB] Get:58 http://ftpmaster.internal/ubuntu lunar/main ppc64el sysvinit-utils ppc64el 3.05-7ubuntu2 [28.5 kB] Get:59 http://ftpmaster.internal/ubuntu lunar/main ppc64el lsb-base all 11.5 [4296 B] Get:60 http://ftpmaster.internal/ubuntu lunar/main ppc64el adduser all 3.129ubuntu1 [59.0 kB] Get:61 http://ftpmaster.internal/ubuntu lunar/main ppc64el gpgv ppc64el 2.2.40-1ubuntu2 [171 kB] Get:62 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libgnutls30 ppc64el 3.7.8-4ubuntu1 [1038 kB] Get:63 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el apt ppc64el 2.5.5 [1417 kB] Get:64 http://ftpmaster.internal/ubuntu lunar/main ppc64el libattr1 ppc64el 1:2.5.1-4 [13.2 kB] Get:65 http://ftpmaster.internal/ubuntu lunar/main ppc64el libsemanage-common all 3.4-1build2 [9774 B] Get:66 http://ftpmaster.internal/ubuntu lunar/main ppc64el libsemanage2 ppc64el 3.4-1build2 [113 kB] Get:67 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libncurses6 ppc64el 6.4-2 [144 kB] Get:68 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libncursesw6 ppc64el 6.4-2 [179 kB] Get:69 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libtinfo6 ppc64el 6.4-2 [124 kB] Get:70 http://ftpmaster.internal/ubuntu lunar/main ppc64el sensible-utils all 0.0.17+nmu1 [19.3 kB] Get:71 http://ftpmaster.internal/ubuntu lunar/main ppc64el readline-common all 8.2-1.3 [55.7 kB] Get:72 http://ftpmaster.internal/ubuntu lunar/main ppc64el libreadline8 ppc64el 8.2-1.3 [175 kB] Get:73 http://ftpmaster.internal/ubuntu lunar/main ppc64el libsqlite3-0 ppc64el 3.40.1-1 [749 kB] Get:74 http://ftpmaster.internal/ubuntu lunar/main ppc64el openssl ppc64el 3.0.7-1ubuntu1 [1195 kB] Get:75 http://ftpmaster.internal/ubuntu lunar/main ppc64el tzdata all 2022g-2ubuntu1 [397 kB] Get:76 http://ftpmaster.internal/ubuntu lunar/main ppc64el xz-utils ppc64el 5.4.1-0.0 [246 kB] Get:77 http://ftpmaster.internal/ubuntu lunar/main ppc64el advancecomp ppc64el 2.5-1 [235 kB] Get:78 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el dpkg-dev all 1.21.18ubuntu3 [1067 kB] Get:79 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libdpkg-perl all 1.21.18ubuntu3 [247 kB] Get:80 http://ftpmaster.internal/ubuntu lunar/main ppc64el libfakeroot ppc64el 1.30.1-1.1ubuntu1 [32.8 kB] Get:81 http://ftpmaster.internal/ubuntu lunar/main ppc64el fakeroot ppc64el 1.30.1-1.1ubuntu1 [62.1 kB] Get:82 http://ftpmaster.internal/ubuntu lunar/main ppc64el gpg ppc64el 2.2.40-1ubuntu2 [646 kB] Get:83 http://ftpmaster.internal/ubuntu lunar/main ppc64el gpgconf ppc64el 2.2.40-1ubuntu2 [103 kB] Get:84 http://ftpmaster.internal/ubuntu lunar/main ppc64el gpg-agent ppc64el 2.2.40-1ubuntu2 [253 kB] Get:85 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el linux-libc-dev ppc64el 5.19.0-23.24 [1335 kB] Get:86 http://ftpmaster.internal/ubuntu lunar/main ppc64el pkgbinarymangler all 151 [16.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 93.9 MB in 4s (25.6 MB/s) (Reading database ... 13031 files and directories currently installed.) Preparing to unpack .../bash_5.2.15-2ubuntu1_ppc64el.deb ... Unpacking bash (5.2.15-2ubuntu1) over (5.2-1ubuntu2) ... Setting up bash (5.2.15-2ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 13031 files and directories currently installed.) Preparing to unpack .../coreutils_9.1-1ubuntu2_ppc64el.deb ... Unpacking coreutils (9.1-1ubuntu2) over (8.32-4.1ubuntu1) ... Setting up coreutils (9.1-1ubuntu2) ... (Reading database ... 13031 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.8-3_ppc64el.deb ... Unpacking diffutils (1:3.8-3) over (1:3.8-1) ... Setting up diffutils (1:3.8-3) ... (Reading database ... 13031 files and directories currently installed.) Preparing to unpack .../liblzma5_5.4.1-0.0_ppc64el.deb ... Unpacking liblzma5:ppc64el (5.4.1-0.0) over (5.2.9-0.0) ... Setting up liblzma5:ppc64el (5.4.1-0.0) ... (Reading database ... 13031 files and directories currently installed.) Preparing to unpack .../0-libcc1-0_12.2.0-14ubuntu1_ppc64el.deb ... Unpacking libcc1-0:ppc64el (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../1-libctf0_2.40-2ubuntu1_ppc64el.deb ... Unpacking libctf0:ppc64el (2.40-2ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../2-libctf-nobfd0_2.40-2ubuntu1_ppc64el.deb ... Unpacking libctf-nobfd0:ppc64el (2.40-2ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../3-binutils-powerpc64le-linux-gnu_2.40-2ubuntu1_ppc64el.deb ... Unpacking binutils-powerpc64le-linux-gnu (2.40-2ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../4-libbinutils_2.40-2ubuntu1_ppc64el.deb ... Unpacking libbinutils:ppc64el (2.40-2ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../5-binutils-common_2.40-2ubuntu1_ppc64el.deb ... Unpacking binutils-common:ppc64el (2.40-2ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../6-binutils_2.40-2ubuntu1_ppc64el.deb ... Unpacking binutils (2.40-2ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../7-gcc-12-base_12.2.0-14ubuntu1_ppc64el.deb ... Unpacking gcc-12-base:ppc64el (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Setting up gcc-12-base:ppc64el (12.2.0-14ubuntu1) ... (Reading database ... 13031 files and directories currently installed.) Preparing to unpack .../libgcc-s1_12.2.0-14ubuntu1_ppc64el.deb ... Unpacking libgcc-s1:ppc64el (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Setting up libgcc-s1:ppc64el (12.2.0-14ubuntu1) ... (Reading database ... 13031 files and directories currently installed.) Preparing to unpack .../00-libgomp1_12.2.0-14ubuntu1_ppc64el.deb ... Unpacking libgomp1:ppc64el (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../01-libitm1_12.2.0-14ubuntu1_ppc64el.deb ... Unpacking libitm1:ppc64el (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../02-libatomic1_12.2.0-14ubuntu1_ppc64el.deb ... Unpacking libatomic1:ppc64el (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../03-libasan8_12.2.0-14ubuntu1_ppc64el.deb ... Unpacking libasan8:ppc64el (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../04-liblsan0_12.2.0-14ubuntu1_ppc64el.deb ... Unpacking liblsan0:ppc64el (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../05-libtsan2_12.2.0-14ubuntu1_ppc64el.deb ... Unpacking libtsan2:ppc64el (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../06-libubsan1_12.2.0-14ubuntu1_ppc64el.deb ... Unpacking libubsan1:ppc64el (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../07-libquadmath0_12.2.0-14ubuntu1_ppc64el.deb ... Unpacking libquadmath0:ppc64el (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../08-g++-12_12.2.0-14ubuntu1_ppc64el.deb ... Unpacking g++-12 (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../09-libstdc++-12-dev_12.2.0-14ubuntu1_ppc64el.deb ... Unpacking libstdc++-12-dev:ppc64el (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../10-libgcc-12-dev_12.2.0-14ubuntu1_ppc64el.deb ... Unpacking libgcc-12-dev:ppc64el (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../11-gcc-12_12.2.0-14ubuntu1_ppc64el.deb ... Unpacking gcc-12 (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../12-cpp-12_12.2.0-14ubuntu1_ppc64el.deb ... Unpacking cpp-12 (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../13-libstdc++6_12.2.0-14ubuntu1_ppc64el.deb ... Unpacking libstdc++6:ppc64el (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Setting up libstdc++6:ppc64el (12.2.0-14ubuntu1) ... (Reading database ... 13031 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.13.dfsg-1ubuntu4_ppc64el.deb ... Unpacking zlib1g:ppc64el (1:1.2.13.dfsg-1ubuntu4) over (1:1.2.11.dfsg-4.1ubuntu1) ... Setting up zlib1g:ppc64el (1:1.2.13.dfsg-1ubuntu4) ... (Reading database ... 13031 files and directories currently installed.) Preparing to unpack .../libmpfr6_4.2.0-1_ppc64el.deb ... Unpacking libmpfr6:ppc64el (4.2.0-1) over (4.1.0-3build3) ... Preparing to unpack .../libzstd1_1.5.2+dfsg2-3_ppc64el.deb ... Unpacking libzstd1:ppc64el (1.5.2+dfsg2-3) over (1.5.2+dfsg-1) ... Setting up libzstd1:ppc64el (1.5.2+dfsg2-3) ... (Reading database ... 13031 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.1-3ubuntu1_ppc64el.deb ... Unpacking libgcrypt20:ppc64el (1.10.1-3ubuntu1) over (1.10.1-2ubuntu1) ... Setting up libgcrypt20:ppc64el (1.10.1-3ubuntu1) ... (Reading database ... 13031 files and directories currently installed.) Preparing to unpack .../libacl1_2.3.1-3_ppc64el.deb ... Unpacking libacl1:ppc64el (2.3.1-3) over (2.3.1-2) ... Setting up libacl1:ppc64el (2.3.1-3) ... (Reading database ... 13031 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a3.0.7-1.1_all.deb ... Unpacking libaudit-common (1:3.0.7-1.1) over (1:3.0.7-1ubuntu3) ... Setting up libaudit-common (1:3.0.7-1.1) ... (Reading database ... 13031 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.0.7-1.1_ppc64el.deb ... Unpacking libaudit1:ppc64el (1:3.0.7-1.1) over (1:3.0.7-1ubuntu3) ... Setting up libaudit1:ppc64el (1:3.0.7-1.1) ... (Reading database ... 13031 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.66-3ubuntu1_ppc64el.deb ... Unpacking libcap2:ppc64el (1:2.66-3ubuntu1) over (1:2.44-1build3) ... Setting up libcap2:ppc64el (1:2.66-3ubuntu1) ... (Reading database ... 13033 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.33-2_ppc64el.deb ... Unpacking libcrypt-dev:ppc64el (1:4.4.33-2) over (1:4.4.33-1) ... Preparing to unpack .../libcrypt1_1%3a4.4.33-2_ppc64el.deb ... Unpacking libcrypt1:ppc64el (1:4.4.33-2) over (1:4.4.33-1) ... Setting up libcrypt1:ppc64el (1:4.4.33-2) ... (Reading database ... 13033 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.42-1_ppc64el.deb ... Unpacking libpcre2-8-0:ppc64el (10.42-1) over (10.40-1ubuntu1) ... Setting up libpcre2-8-0:ppc64el (10.42-1) ... (Reading database ... 13033 files and directories currently installed.) Preparing to unpack .../libselinux1_3.4-1build2_ppc64el.deb ... Unpacking libselinux1:ppc64el (3.4-1build2) over (3.4-1build1) ... Setting up libselinux1:ppc64el (3.4-1build2) ... (Reading database ... 13033 files and directories currently installed.) Preparing to unpack .../libperl5.36_5.36.0-7_ppc64el.deb ... Unpacking libperl5.36:ppc64el (5.36.0-7) over (5.36.0-4ubuntu2) ... Preparing to unpack .../perl_5.36.0-7_ppc64el.deb ... Unpacking perl (5.36.0-7) over (5.36.0-4ubuntu2) ... Preparing to unpack .../perl-base_5.36.0-7_ppc64el.deb ... Unpacking perl-base (5.36.0-7) over (5.36.0-4ubuntu2) ... Setting up perl-base (5.36.0-7) ... (Reading database ... 13033 files and directories currently installed.) Preparing to unpack .../perl-modules-5.36_5.36.0-7_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7) over (5.36.0-4ubuntu2) ... Preparing to unpack .../libdb5.3_5.3.28+dfsg2-1_ppc64el.deb ... Unpacking libdb5.3:ppc64el (5.3.28+dfsg2-1) over (5.3.28+dfsg1-0.10) ... Setting up libdb5.3:ppc64el (5.3.28+dfsg2-1) ... (Reading database ... 13033 files and directories currently installed.) Preparing to unpack .../debconf_1.5.82_all.deb ... Unpacking debconf (1.5.82) over (1.5.79ubuntu1) ... Setting up debconf (1.5.82) ... (Reading database ... 13033 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.7-1ubuntu1_ppc64el.deb ... Unpacking libssl3:ppc64el (3.0.7-1ubuntu1) over (3.0.5-2ubuntu2) ... Preparing to unpack .../systemd-sysv_252.4-1ubuntu1_ppc64el.deb ... Unpacking systemd-sysv (252.4-1ubuntu1) over (251.4-1ubuntu7) ... Setting up libssl3:ppc64el (3.0.7-1ubuntu1) ... (Reading database ... 13034 files and directories currently installed.) Preparing to unpack .../systemd_252.4-1ubuntu1_ppc64el.deb ... Unpacking systemd (252.4-1ubuntu1) over (251.4-1ubuntu7) ... Preparing to unpack .../libsystemd-shared_252.4-1ubuntu1_ppc64el.deb ... Unpacking libsystemd-shared:ppc64el (252.4-1ubuntu1) over (251.4-1ubuntu7) ... Preparing to unpack .../libp11-kit0_0.24.1-2ubuntu1_ppc64el.deb ... Unpacking libp11-kit0:ppc64el (0.24.1-2ubuntu1) over (0.24.1-1ubuntu2) ... Setting up libp11-kit0:ppc64el (0.24.1-2ubuntu1) ... (Reading database ... 13046 files and directories currently installed.) Preparing to unpack .../libsystemd0_252.4-1ubuntu1_ppc64el.deb ... Unpacking libsystemd0:ppc64el (252.4-1ubuntu1) over (251.4-1ubuntu7) ... Setting up libsystemd0:ppc64el (252.4-1ubuntu1) ... (Reading database ... 13047 files and directories currently installed.) Preparing to unpack .../libudev1_252.4-1ubuntu1_ppc64el.deb ... Unpacking libudev1:ppc64el (252.4-1ubuntu1) over (251.4-1ubuntu7) ... Setting up libudev1:ppc64el (252.4-1ubuntu1) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.5.5_ppc64el.deb ... Unpacking libapt-pkg6.0:ppc64el (2.5.5) over (2.5.4) ... Setting up libapt-pkg6.0:ppc64el (2.5.5) ... (Reading database ... 13048 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.18ubuntu3_ppc64el.deb ... Unpacking dpkg (1.21.18ubuntu3) over (1.21.11ubuntu2) ... Setting up dpkg (1.21.18ubuntu3) ... (Reading database ... 13047 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.4-2_ppc64el.deb ... Unpacking ncurses-bin (6.4-2) over (6.3+20220423-2) ... Setting up ncurses-bin (6.4-2) ... (Reading database ... 13047 files and directories currently installed.) Preparing to unpack .../archives/sed_4.9-1_ppc64el.deb ... Unpacking sed (4.9-1) over (4.8-1ubuntu2) ... Setting up sed (4.9-1) ... (Reading database ... 13047 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.4-2_all.deb ... Unpacking ncurses-base (6.4-2) over (6.3+20220423-2) ... Setting up ncurses-base (6.4-2) ... (Reading database ... 13047 files and directories currently installed.) Preparing to unpack .../archives/lsb-base_11.5_all.deb ... Unpacking lsb-base (11.5) over (11.2ubuntu1) ... Preparing to unpack .../sysvinit-utils_3.05-7ubuntu2_ppc64el.deb ... Unpacking sysvinit-utils (3.05-7ubuntu2) over (3.04-1ubuntu1) ... Setting up sysvinit-utils (3.05-7ubuntu2) ... (Reading database ... 13047 files and directories currently installed.) Preparing to unpack .../adduser_3.129ubuntu1_all.deb ... moving unchanged adduser.conf to adduser.conf.update-old. New dpkg-conffile will come from the package. Unpacking adduser (3.129ubuntu1) over (3.121ubuntu1) ... Setting up adduser (3.129ubuntu1) ... Installing new version of config file /etc/deluser.conf ... (Reading database ... 13014 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.40-1ubuntu2_ppc64el.deb ... Unpacking gpgv (2.2.40-1ubuntu2) over (2.2.40-1ubuntu1) ... Setting up gpgv (2.2.40-1ubuntu2) ... (Reading database ... 13014 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.8-4ubuntu1_ppc64el.deb ... Unpacking libgnutls30:ppc64el (3.7.8-4ubuntu1) over (3.7.7-2ubuntu2) ... Setting up libgnutls30:ppc64el (3.7.8-4ubuntu1) ... (Reading database ... 13014 files and directories currently installed.) Preparing to unpack .../archives/apt_2.5.5_ppc64el.deb ... Unpacking apt (2.5.5) over (2.5.4) ... Setting up apt (2.5.5) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... (Reading database ... 13014 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.5.1-4_ppc64el.deb ... Unpacking libattr1:ppc64el (1:2.5.1-4) over (1:2.5.1-3) ... Setting up libattr1:ppc64el (1:2.5.1-4) ... (Reading database ... 13014 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.4-1build2_all.deb ... Unpacking libsemanage-common (3.4-1build2) over (3.4-1build1) ... Setting up libsemanage-common (3.4-1build2) ... (Reading database ... 13014 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.4-1build2_ppc64el.deb ... Unpacking libsemanage2:ppc64el (3.4-1build2) over (3.4-1build1) ... Setting up libsemanage2:ppc64el (3.4-1build2) ... (Reading database ... 13014 files and directories currently installed.) Preparing to unpack .../libncurses6_6.4-2_ppc64el.deb ... Unpacking libncurses6:ppc64el (6.4-2) over (6.3+20220423-2) ... Preparing to unpack .../libncursesw6_6.4-2_ppc64el.deb ... Unpacking libncursesw6:ppc64el (6.4-2) over (6.3+20220423-2) ... Preparing to unpack .../libtinfo6_6.4-2_ppc64el.deb ... Unpacking libtinfo6:ppc64el (6.4-2) over (6.3+20220423-2) ... Setting up libtinfo6:ppc64el (6.4-2) ... (Reading database ... 13014 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) over (0.0.17) ... Preparing to unpack .../01-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) over (8.2-1.2) ... Preparing to unpack .../02-libreadline8_8.2-1.3_ppc64el.deb ... Unpacking libreadline8:ppc64el (8.2-1.3) over (8.2-1.2) ... Preparing to unpack .../03-libsqlite3-0_3.40.1-1_ppc64el.deb ... Unpacking libsqlite3-0:ppc64el (3.40.1-1) over (3.40.0-1) ... Preparing to unpack .../04-openssl_3.0.7-1ubuntu1_ppc64el.deb ... Unpacking openssl (3.0.7-1ubuntu1) over (3.0.5-2ubuntu2) ... Preparing to unpack .../05-tzdata_2022g-2ubuntu1_all.deb ... Unpacking tzdata (2022g-2ubuntu1) over (2022g-1ubuntu1) ... Preparing to unpack .../06-xz-utils_5.4.1-0.0_ppc64el.deb ... Unpacking xz-utils (5.4.1-0.0) over (5.2.9-0.0) ... Preparing to unpack .../07-advancecomp_2.5-1_ppc64el.deb ... Unpacking advancecomp (2.5-1) over (2.4-1) ... Preparing to unpack .../08-dpkg-dev_1.21.18ubuntu3_all.deb ... Unpacking dpkg-dev (1.21.18ubuntu3) over (1.21.11ubuntu2) ... Preparing to unpack .../09-libdpkg-perl_1.21.18ubuntu3_all.deb ... Unpacking libdpkg-perl (1.21.18ubuntu3) over (1.21.11ubuntu2) ... Preparing to unpack .../10-libfakeroot_1.30.1-1.1ubuntu1_ppc64el.deb ... Unpacking libfakeroot:ppc64el (1.30.1-1.1ubuntu1) over (1.30.1-1ubuntu1) ... Preparing to unpack .../11-fakeroot_1.30.1-1.1ubuntu1_ppc64el.deb ... Unpacking fakeroot (1.30.1-1.1ubuntu1) over (1.30.1-1ubuntu1) ... Preparing to unpack .../12-gpg_2.2.40-1ubuntu2_ppc64el.deb ... Unpacking gpg (2.2.40-1ubuntu2) over (2.2.40-1ubuntu1) ... Preparing to unpack .../13-gpgconf_2.2.40-1ubuntu2_ppc64el.deb ... Unpacking gpgconf (2.2.40-1ubuntu2) over (2.2.40-1ubuntu1) ... Preparing to unpack .../14-gpg-agent_2.2.40-1ubuntu2_ppc64el.deb ... Unpacking gpg-agent (2.2.40-1ubuntu2) over (2.2.40-1ubuntu1) ... Preparing to unpack .../15-linux-libc-dev_5.19.0-23.24_ppc64el.deb ... Unpacking linux-libc-dev:ppc64el (5.19.0-23.24) over (5.19.0-21.21) ... Preparing to unpack .../16-pkgbinarymangler_151_all.deb ... Unpacking pkgbinarymangler (151) over (149) ... Setting up lsb-base (11.5) ... Setting up libsqlite3-0:ppc64el (3.40.1-1) ... Setting up binutils-common:ppc64el (2.40-2ubuntu1) ... Setting up linux-libc-dev:ppc64el (5.19.0-23.24) ... Setting up libctf-nobfd0:ppc64el (2.40-2ubuntu1) ... Setting up libgomp1:ppc64el (12.2.0-14ubuntu1) ... Setting up libfakeroot:ppc64el (1.30.1-1.1ubuntu1) ... Setting up tzdata (2022g-2ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Jan 26 17:32:20 UTC 2023. Universal Time is now: Thu Jan 26 17:32:20 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.30.1-1.1ubuntu1) ... Setting up perl-modules-5.36 (5.36.0-7) ... Setting up libmpfr6:ppc64el (4.2.0-1) ... Setting up libncurses6:ppc64el (6.4-2) ... Setting up xz-utils (5.4.1-0.0) ... Setting up libquadmath0:ppc64el (12.2.0-14ubuntu1) ... Setting up libatomic1:ppc64el (12.2.0-14ubuntu1) ... Setting up libsystemd-shared:ppc64el (252.4-1ubuntu1) ... Setting up libncursesw6:ppc64el (6.4-2) ... Setting up libubsan1:ppc64el (12.2.0-14ubuntu1) ... Setting up advancecomp (2.5-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libcrypt-dev:ppc64el (1:4.4.33-2) ... Setting up libasan8:ppc64el (12.2.0-14ubuntu1) ... Setting up libtsan2:ppc64el (12.2.0-14ubuntu1) ... Setting up libbinutils:ppc64el (2.40-2ubuntu1) ... Setting up openssl (3.0.7-1ubuntu1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.2-1.3) ... Setting up libcc1-0:ppc64el (12.2.0-14ubuntu1) ... Setting up libperl5.36:ppc64el (5.36.0-7) ... Setting up liblsan0:ppc64el (12.2.0-14ubuntu1) ... Setting up libitm1:ppc64el (12.2.0-14ubuntu1) ... Setting up libctf0:ppc64el (2.40-2ubuntu1) ... Setting up cpp-12 (12.2.0-14ubuntu1) ... Setting up pkgbinarymangler (151) ... Setting up libreadline8:ppc64el (8.2-1.3) ... Setting up systemd (252.4-1ubuntu1) ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up perl (5.36.0-7) ... Setting up libgcc-12-dev:ppc64el (12.2.0-14ubuntu1) ... Setting up libdpkg-perl (1.21.18ubuntu3) ... Setting up gpgconf (2.2.40-1ubuntu2) ... Setting up binutils-powerpc64le-linux-gnu (2.40-2ubuntu1) ... Setting up gpg (2.2.40-1ubuntu2) ... Setting up systemd-sysv (252.4-1ubuntu1) ... Setting up gpg-agent (2.2.40-1ubuntu2) ... Setting up libstdc++-12-dev:ppc64el (12.2.0-14ubuntu1) ... Setting up binutils (2.40-2ubuntu1) ... Setting up dpkg-dev (1.21.18ubuntu3) ... Setting up gcc-12 (12.2.0-14ubuntu1) ... Setting up g++-12 (12.2.0-14ubuntu1) ... Processing triggers for debianutils (5.7-0.4) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-25524223 ppc64el lunar-proposed -c chroot:build-PACKAGEBUILD-25524223 --arch=ppc64el --dist=lunar-proposed --nolog nanopolish_0.14.0-1ubuntu1.dsc Initiating build PACKAGEBUILD-25524223 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-137-generic #154-Ubuntu SMP Thu Jan 5 17:03:14 UTC 2023 ppc64le sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos01-ppc64el-018.buildd +==============================================================================+ | nanopolish 0.14.0-1ubuntu1 (ppc64el) Thu, 26 Jan 2023 17:32:22 +0000 | +==============================================================================+ Package: nanopolish Version: 0.14.0-1ubuntu1 Source Version: 0.14.0-1ubuntu1 Distribution: lunar-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-25524223/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/nanopolish-xRv5FC/resolver-IXnWeN' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- nanopolish_0.14.0-1ubuntu1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/nanopolish-xRv5FC/nanopolish-0.14.0' with '<>' I: NOTICE: Log filtering will replace 'build/nanopolish-xRv5FC' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, python3, zlib1g-dev, libfast5-dev, libhts-dev, libeigen3-dev, libminimap2-dev, libstreamvbyte-dev, libslow5-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3, zlib1g-dev, libfast5-dev, libhts-dev, libeigen3-dev, libminimap2-dev, libstreamvbyte-dev, libslow5-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [425 B] Get:5 copy:/<>/apt_archive ./ Packages [510 B] Fetched 1892 B in 0s (154 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libbrotli1 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libeigen3-dev libelf1 libexpat1 libfast5-dev libfile-stripnondeterminism-perl libgfortran5 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhts-dev libhts3 libhtscodecs2 libicu71 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libldap2 liblzma-dev libmagic-mgc libmagic1 libminimap2-dev libmpdec3 libnghttp2-14 libpipeline1 libpkgconf3 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libslow5-0 libslow5-dev libssh-4 libssl-dev libstreamvbyte-dev libstreamvbyte0 libsub-override-perl libsz2 libtool libuchardet0 libxml2 m4 man-db media-types pkg-config pkgconf pkgconf-bin po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.11 python3.11-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build python3-tomli python3-installer gettext-doc libasprintf-dev libgettextpo-dev groff libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libeigen3-doc libmpfrc++-dev libhdf5-doc liblzma-doc libssl-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libbrotli1 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libeigen3-dev libelf1 libexpat1 libfast5-dev libfile-stripnondeterminism-perl libgfortran5 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhts-dev libhts3 libhtscodecs2 libicu71 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libldap2 liblzma-dev libmagic-mgc libmagic1 libminimap2-dev libmpdec3 libnghttp2-14 libpipeline1 libpkgconf3 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libslow5-0 libslow5-dev libssh-4 libssl-dev libstreamvbyte-dev libstreamvbyte0 libsub-override-perl libsz2 libtool libuchardet0 libxml2 m4 man-db media-types pkg-config pkgconf pkgconf-bin po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.11 python3.11-minimal sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 92 newly installed, 0 to remove and 0 not upgraded. Need to get 46.1 MB of archives. After this operation, 181 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [738 B] Get:2 http://ftpmaster.internal/ubuntu lunar/main ppc64el libpython3.11-minimal ppc64el 3.11.1-2 [831 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main ppc64el libexpat1 ppc64el 2.5.0-1 [95.3 kB] Get:4 http://ftpmaster.internal/ubuntu lunar/main ppc64el python3.11-minimal ppc64el 3.11.1-2 [2367 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el python3-minimal ppc64el 3.11.1-0ubuntu1 [24.2 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main ppc64el media-types all 8.0.0 [24.9 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main ppc64el libmpdec3 ppc64el 2.5.1-2build2 [116 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main ppc64el libpython3.11-stdlib ppc64el 3.11.1-2 [1833 kB] Get:9 http://ftpmaster.internal/ubuntu lunar/main ppc64el python3.11 ppc64el 3.11.1-2 [561 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libpython3-stdlib ppc64el 3.11.1-0ubuntu1 [6870 B] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el python3 ppc64el 3.11.1-0ubuntu1 [22.5 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main ppc64el libelf1 ppc64el 0.188-2.1 [63.2 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main ppc64el libicu71 ppc64el 71.1-3ubuntu1 [10.9 MB] Get:14 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxml2 ppc64el 2.9.14+dfsg-1.1 [820 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main ppc64el bsdextrautils ppc64el 2.38.1-4ubuntu1 [76.4 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main ppc64el libmagic-mgc ppc64el 1:5.44-2 [293 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main ppc64el libmagic1 ppc64el 1:5.44-2 [104 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main ppc64el file ppc64el 1:5.44-2 [22.4 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main ppc64el gettext-base ppc64el 0.21-10 [41.8 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main ppc64el libuchardet0 ppc64el 0.0.7-1build2 [80.4 kB] Get:21 http://ftpmaster.internal/ubuntu lunar/main ppc64el groff-base ppc64el 1.22.4-9 [1004 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main ppc64el libnghttp2-14 ppc64el 1.51.0-1 [87.1 kB] Get:23 http://ftpmaster.internal/ubuntu lunar/main ppc64el libpipeline1 ppc64el 1.5.7-1 [25.8 kB] Get:24 http://ftpmaster.internal/ubuntu lunar/main ppc64el libpsl5 ppc64el 0.21.0-1.2build2 [60.3 kB] Get:25 http://ftpmaster.internal/ubuntu lunar/main ppc64el man-db ppc64el 2.11.2-1 [1256 kB] Get:26 http://ftpmaster.internal/ubuntu lunar/main ppc64el m4 ppc64el 1.4.19-2 [275 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main ppc64el autoconf all 2.71-3 [339 kB] Get:28 http://ftpmaster.internal/ubuntu lunar/main ppc64el autotools-dev all 20220109.1 [44.9 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main ppc64el automake all 1:1.16.5-1.3 [558 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main ppc64el autopoint all 0.21-10 [421 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main ppc64el libdebhelper-perl all 13.11.4ubuntu3 [66.1 kB] Get:32 http://ftpmaster.internal/ubuntu lunar/main ppc64el libtool all 2.4.7-5 [166 kB] Get:33 http://ftpmaster.internal/ubuntu lunar/main ppc64el dh-autoreconf all 20 [16.1 kB] Get:34 http://ftpmaster.internal/ubuntu lunar/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] Get:35 http://ftpmaster.internal/ubuntu lunar/main ppc64el libsub-override-perl all 0.09-4 [8706 B] Get:36 http://ftpmaster.internal/ubuntu lunar/main ppc64el libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:37 http://ftpmaster.internal/ubuntu lunar/main ppc64el dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:38 http://ftpmaster.internal/ubuntu lunar/main ppc64el libdw1 ppc64el 0.188-2.1 [284 kB] Get:39 http://ftpmaster.internal/ubuntu lunar/main ppc64el debugedit ppc64el 1:5.0-5 [51.1 kB] Get:40 http://ftpmaster.internal/ubuntu lunar/main ppc64el dwz ppc64el 0.15-1 [139 kB] Get:41 http://ftpmaster.internal/ubuntu lunar/main ppc64el gettext ppc64el 0.21-10 [971 kB] Get:42 http://ftpmaster.internal/ubuntu lunar/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:43 http://ftpmaster.internal/ubuntu lunar/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] Get:44 http://ftpmaster.internal/ubuntu lunar/main ppc64el debhelper all 13.11.4ubuntu3 [925 kB] Get:45 http://ftpmaster.internal/ubuntu lunar/main ppc64el python3-lib2to3 all 3.10.8-1 [77.5 kB] Get:46 http://ftpmaster.internal/ubuntu lunar/main ppc64el python3-distutils all 3.10.8-1 [139 kB] Get:47 http://ftpmaster.internal/ubuntu lunar/universe ppc64el dh-python all 5.20230109 [101 kB] Get:48 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el hdf5-helpers ppc64el 1.10.8+repack1-1ubuntu1 [13.9 kB] Get:49 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libaec0 ppc64el 1.0.6-1 [27.9 kB] Get:50 http://ftpmaster.internal/ubuntu lunar/main ppc64el libbrotli1 ppc64el 1.0.9-2build7 [369 kB] Get:51 http://ftpmaster.internal/ubuntu lunar/main ppc64el libsasl2-modules-db ppc64el 2.1.28+dfsg-10 [22.7 kB] Get:52 http://ftpmaster.internal/ubuntu lunar/main ppc64el libsasl2-2 ppc64el 2.1.28+dfsg-10 [69.2 kB] Get:53 http://ftpmaster.internal/ubuntu lunar/main ppc64el libldap2 ppc64el 2.6.3+dfsg-1~exp1ubuntu1 [217 kB] Get:54 http://ftpmaster.internal/ubuntu lunar/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2build4 [65.5 kB] Get:55 http://ftpmaster.internal/ubuntu lunar/main ppc64el libssh-4 ppc64el 0.10.4-2 [235 kB] Get:56 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libcurl3-gnutls ppc64el 7.87.0-1ubuntu1 [352 kB] Get:57 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libcurl4 ppc64el 7.87.0-1ubuntu1 [358 kB] Get:58 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libcurl4-gnutls-dev ppc64el 7.87.0-1ubuntu1 [462 kB] Get:59 http://ftpmaster.internal/ubuntu lunar/main ppc64el libdeflate0 ppc64el 1.14-1 [53.8 kB] Get:60 http://ftpmaster.internal/ubuntu lunar/main ppc64el libdeflate-dev ppc64el 1.14-1 [49.2 kB] Get:61 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libsz2 ppc64el 1.0.6-1 [5804 B] Get:62 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el libhdf5-103-1 ppc64el 1.10.8+repack1-1ubuntu1 [1367 kB] Get:63 http://ftpmaster.internal/ubuntu lunar/main ppc64el libgfortran5 ppc64el 12.2.0-14ubuntu1 [546 kB] Get:64 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el libhdf5-fortran-102 ppc64el 1.10.8+repack1-1ubuntu1 [94.8 kB] Get:65 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el libhdf5-hl-100 ppc64el 1.10.8+repack1-1ubuntu1 [69.5 kB] Get:66 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el libhdf5-hl-fortran-100 ppc64el 1.10.8+repack1-1ubuntu1 [34.0 kB] Get:67 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el libhdf5-cpp-103-1 ppc64el 1.10.8+repack1-1ubuntu1 [126 kB] Get:68 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el libhdf5-hl-cpp-100 ppc64el 1.10.8+repack1-1ubuntu1 [10.7 kB] Get:69 http://ftpmaster.internal/ubuntu lunar/main ppc64el zlib1g-dev ppc64el 1:1.2.13.dfsg-1ubuntu4 [901 kB] Get:70 http://ftpmaster.internal/ubuntu lunar/main ppc64el libjpeg-turbo8 ppc64el 2.1.2-0ubuntu1 [214 kB] Get:71 http://ftpmaster.internal/ubuntu lunar/main ppc64el libjpeg-turbo8-dev ppc64el 2.1.2-0ubuntu1 [337 kB] Get:72 http://ftpmaster.internal/ubuntu lunar/main ppc64el libjpeg8 ppc64el 8c-2ubuntu10 [2266 B] Get:73 http://ftpmaster.internal/ubuntu lunar/main ppc64el libjpeg8-dev ppc64el 8c-2ubuntu10 [1476 B] Get:74 http://ftpmaster.internal/ubuntu lunar/main ppc64el libjpeg-dev ppc64el 8c-2ubuntu10 [1476 B] Get:75 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libaec-dev ppc64el 1.0.6-1 [27.2 kB] Get:76 http://ftpmaster.internal/ubuntu lunar/main ppc64el libssl-dev ppc64el 3.0.7-1ubuntu1 [2620 kB] Get:77 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el libhdf5-dev ppc64el 1.10.8+repack1-1ubuntu1 [3339 kB] Get:78 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libfast5-dev all 0.6.5-7build1 [50.3 kB] Get:79 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libhtscodecs2 ppc64el 1.3.0-4 [103 kB] Get:80 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libhts3 ppc64el 1.16+ds-3 [529 kB] Get:81 http://ftpmaster.internal/ubuntu lunar/main ppc64el liblzma-dev ppc64el 5.4.1-0.0 [203 kB] Get:82 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libhts-dev ppc64el 1.16+ds-3 [6021 kB] Get:83 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libminimap2-dev ppc64el 2.24+dfsg-3 [143 kB] Get:84 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el libpkgconf3 ppc64el 1.8.1-1ubuntu2 [35.2 kB] Get:85 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el libslow5-0 ppc64el 0.7.0+dfsg-2ubuntu1 [69.6 kB] Get:86 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el libslow5-dev ppc64el 0.7.0+dfsg-2ubuntu1 [102 kB] Get:87 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libstreamvbyte0 ppc64el 0.4.1-4ubuntu1 [6400 B] Get:88 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libstreamvbyte-dev ppc64el 0.4.1-4ubuntu1 [6678 B] Get:89 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el pkgconf-bin ppc64el 1.8.1-1ubuntu2 [22.0 kB] Get:90 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el pkgconf ppc64el 1.8.1-1ubuntu2 [16.8 kB] Get:91 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el pkg-config ppc64el 1.8.1-1ubuntu2 [5410 B] Get:92 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libeigen3-dev all 3.4.0-2ubuntu2 [1056 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 46.1 MB in 3s (16.6 MB/s) Selecting previously unselected package libpython3.11-minimal:ppc64el. (Reading database ... 13079 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.1-2_ppc64el.deb ... Unpacking libpython3.11-minimal:ppc64el (3.11.1-2) ... Selecting previously unselected package libexpat1:ppc64el. Preparing to unpack .../libexpat1_2.5.0-1_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.1-2_ppc64el.deb ... Unpacking python3.11-minimal (3.11.1-2) ... Setting up libpython3.11-minimal:ppc64el (3.11.1-2) ... Setting up libexpat1:ppc64el (2.5.0-1) ... Setting up python3.11-minimal (3.11.1-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 13393 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.1-0ubuntu1_ppc64el.deb ... Unpacking python3-minimal (3.11.1-0ubuntu1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_8.0.0_all.deb ... Unpacking media-types (8.0.0) ... Selecting previously unselected package libmpdec3:ppc64el. Preparing to unpack .../2-libmpdec3_2.5.1-2build2_ppc64el.deb ... Unpacking libmpdec3:ppc64el (2.5.1-2build2) ... Selecting previously unselected package libpython3.11-stdlib:ppc64el. Preparing to unpack .../3-libpython3.11-stdlib_3.11.1-2_ppc64el.deb ... Unpacking libpython3.11-stdlib:ppc64el (3.11.1-2) ... Selecting previously unselected package python3.11. Preparing to unpack .../4-python3.11_3.11.1-2_ppc64el.deb ... Unpacking python3.11 (3.11.1-2) ... Selecting previously unselected package libpython3-stdlib:ppc64el. Preparing to unpack .../5-libpython3-stdlib_3.11.1-0ubuntu1_ppc64el.deb ... Unpacking libpython3-stdlib:ppc64el (3.11.1-0ubuntu1) ... Setting up python3-minimal (3.11.1-0ubuntu1) ... Selecting previously unselected package python3. (Reading database ... 13805 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.1-0ubuntu1_ppc64el.deb ... Unpacking python3 (3.11.1-0ubuntu1) ... Selecting previously unselected package libelf1:ppc64el. Preparing to unpack .../01-libelf1_0.188-2.1_ppc64el.deb ... Unpacking libelf1:ppc64el (0.188-2.1) ... Selecting previously unselected package libicu71:ppc64el. Preparing to unpack .../02-libicu71_71.1-3ubuntu1_ppc64el.deb ... Unpacking libicu71:ppc64el (71.1-3ubuntu1) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../03-libxml2_2.9.14+dfsg-1.1_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.14+dfsg-1.1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../04-bsdextrautils_2.38.1-4ubuntu1_ppc64el.deb ... Unpacking bsdextrautils (2.38.1-4ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.44-2_ppc64el.deb ... Unpacking libmagic-mgc (1:5.44-2) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../06-libmagic1_1%3a5.44-2_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.44-2) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.44-2_ppc64el.deb ... Unpacking file (1:5.44-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../08-gettext-base_0.21-10_ppc64el.deb ... Unpacking gettext-base (0.21-10) ... Selecting previously unselected package libuchardet0:ppc64el. Preparing to unpack .../09-libuchardet0_0.0.7-1build2_ppc64el.deb ... Unpacking libuchardet0:ppc64el (0.0.7-1build2) ... Selecting previously unselected package groff-base. Preparing to unpack .../10-groff-base_1.22.4-9_ppc64el.deb ... Unpacking groff-base (1.22.4-9) ... Selecting previously unselected package libnghttp2-14:ppc64el. Preparing to unpack .../11-libnghttp2-14_1.51.0-1_ppc64el.deb ... Unpacking libnghttp2-14:ppc64el (1.51.0-1) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../12-libpipeline1_1.5.7-1_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.5.7-1) ... Selecting previously unselected package libpsl5:ppc64el. Preparing to unpack .../13-libpsl5_0.21.0-1.2build2_ppc64el.deb ... Unpacking libpsl5:ppc64el (0.21.0-1.2build2) ... Selecting previously unselected package man-db. Preparing to unpack .../14-man-db_2.11.2-1_ppc64el.deb ... Unpacking man-db (2.11.2-1) ... Selecting previously unselected package m4. Preparing to unpack .../15-m4_1.4.19-2_ppc64el.deb ... Unpacking m4 (1.4.19-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../16-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../17-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../18-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../19-autopoint_0.21-10_all.deb ... Unpacking autopoint (0.21-10) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../20-libdebhelper-perl_13.11.4ubuntu3_all.deb ... Unpacking libdebhelper-perl (13.11.4ubuntu3) ... Selecting previously unselected package libtool. Preparing to unpack .../21-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../22-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../23-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../24-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../25-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../26-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libdw1:ppc64el. Preparing to unpack .../27-libdw1_0.188-2.1_ppc64el.deb ... Unpacking libdw1:ppc64el (0.188-2.1) ... Selecting previously unselected package debugedit. Preparing to unpack .../28-debugedit_1%3a5.0-5_ppc64el.deb ... Unpacking debugedit (1:5.0-5) ... Selecting previously unselected package dwz. Preparing to unpack .../29-dwz_0.15-1_ppc64el.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../30-gettext_0.21-10_ppc64el.deb ... Unpacking gettext (0.21-10) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../31-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../32-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../33-debhelper_13.11.4ubuntu3_all.deb ... Unpacking debhelper (13.11.4ubuntu3) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../34-python3-lib2to3_3.10.8-1_all.deb ... Unpacking python3-lib2to3 (3.10.8-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../35-python3-distutils_3.10.8-1_all.deb ... Unpacking python3-distutils (3.10.8-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../36-dh-python_5.20230109_all.deb ... Unpacking dh-python (5.20230109) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../37-hdf5-helpers_1.10.8+repack1-1ubuntu1_ppc64el.deb ... Unpacking hdf5-helpers (1.10.8+repack1-1ubuntu1) ... Selecting previously unselected package libaec0:ppc64el. Preparing to unpack .../38-libaec0_1.0.6-1_ppc64el.deb ... Unpacking libaec0:ppc64el (1.0.6-1) ... Selecting previously unselected package libbrotli1:ppc64el. Preparing to unpack .../39-libbrotli1_1.0.9-2build7_ppc64el.deb ... Unpacking libbrotli1:ppc64el (1.0.9-2build7) ... Selecting previously unselected package libsasl2-modules-db:ppc64el. Preparing to unpack .../40-libsasl2-modules-db_2.1.28+dfsg-10_ppc64el.deb ... Unpacking libsasl2-modules-db:ppc64el (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:ppc64el. Preparing to unpack .../41-libsasl2-2_2.1.28+dfsg-10_ppc64el.deb ... Unpacking libsasl2-2:ppc64el (2.1.28+dfsg-10) ... Selecting previously unselected package libldap2:ppc64el. Preparing to unpack .../42-libldap2_2.6.3+dfsg-1~exp1ubuntu1_ppc64el.deb ... Unpacking libldap2:ppc64el (2.6.3+dfsg-1~exp1ubuntu1) ... Selecting previously unselected package librtmp1:ppc64el. Preparing to unpack .../43-librtmp1_2.4+20151223.gitfa8646d.1-2build4_ppc64el.deb ... Unpacking librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build4) ... Selecting previously unselected package libssh-4:ppc64el. Preparing to unpack .../44-libssh-4_0.10.4-2_ppc64el.deb ... Unpacking libssh-4:ppc64el (0.10.4-2) ... Selecting previously unselected package libcurl3-gnutls:ppc64el. Preparing to unpack .../45-libcurl3-gnutls_7.87.0-1ubuntu1_ppc64el.deb ... Unpacking libcurl3-gnutls:ppc64el (7.87.0-1ubuntu1) ... Selecting previously unselected package libcurl4:ppc64el. Preparing to unpack .../46-libcurl4_7.87.0-1ubuntu1_ppc64el.deb ... Unpacking libcurl4:ppc64el (7.87.0-1ubuntu1) ... Selecting previously unselected package libcurl4-gnutls-dev:ppc64el. Preparing to unpack .../47-libcurl4-gnutls-dev_7.87.0-1ubuntu1_ppc64el.deb ... Unpacking libcurl4-gnutls-dev:ppc64el (7.87.0-1ubuntu1) ... Selecting previously unselected package libdeflate0:ppc64el. Preparing to unpack .../48-libdeflate0_1.14-1_ppc64el.deb ... Unpacking libdeflate0:ppc64el (1.14-1) ... Selecting previously unselected package libdeflate-dev:ppc64el. Preparing to unpack .../49-libdeflate-dev_1.14-1_ppc64el.deb ... Unpacking libdeflate-dev:ppc64el (1.14-1) ... Selecting previously unselected package libsz2:ppc64el. Preparing to unpack .../50-libsz2_1.0.6-1_ppc64el.deb ... Unpacking libsz2:ppc64el (1.0.6-1) ... Selecting previously unselected package libhdf5-103-1:ppc64el. Preparing to unpack .../51-libhdf5-103-1_1.10.8+repack1-1ubuntu1_ppc64el.deb ... Unpacking libhdf5-103-1:ppc64el (1.10.8+repack1-1ubuntu1) ... Selecting previously unselected package libgfortran5:ppc64el. Preparing to unpack .../52-libgfortran5_12.2.0-14ubuntu1_ppc64el.deb ... Unpacking libgfortran5:ppc64el (12.2.0-14ubuntu1) ... Selecting previously unselected package libhdf5-fortran-102:ppc64el. Preparing to unpack .../53-libhdf5-fortran-102_1.10.8+repack1-1ubuntu1_ppc64el.deb ... Unpacking libhdf5-fortran-102:ppc64el (1.10.8+repack1-1ubuntu1) ... Selecting previously unselected package libhdf5-hl-100:ppc64el. Preparing to unpack .../54-libhdf5-hl-100_1.10.8+repack1-1ubuntu1_ppc64el.deb ... Unpacking libhdf5-hl-100:ppc64el (1.10.8+repack1-1ubuntu1) ... Selecting previously unselected package libhdf5-hl-fortran-100:ppc64el. Preparing to unpack .../55-libhdf5-hl-fortran-100_1.10.8+repack1-1ubuntu1_ppc64el.deb ... Unpacking libhdf5-hl-fortran-100:ppc64el (1.10.8+repack1-1ubuntu1) ... Selecting previously unselected package libhdf5-cpp-103-1:ppc64el. Preparing to unpack .../56-libhdf5-cpp-103-1_1.10.8+repack1-1ubuntu1_ppc64el.deb ... Unpacking libhdf5-cpp-103-1:ppc64el (1.10.8+repack1-1ubuntu1) ... Selecting previously unselected package libhdf5-hl-cpp-100:ppc64el. Preparing to unpack .../57-libhdf5-hl-cpp-100_1.10.8+repack1-1ubuntu1_ppc64el.deb ... Unpacking libhdf5-hl-cpp-100:ppc64el (1.10.8+repack1-1ubuntu1) ... Selecting previously unselected package zlib1g-dev:ppc64el. Preparing to unpack .../58-zlib1g-dev_1%3a1.2.13.dfsg-1ubuntu4_ppc64el.deb ... Unpacking zlib1g-dev:ppc64el (1:1.2.13.dfsg-1ubuntu4) ... Selecting previously unselected package libjpeg-turbo8:ppc64el. Preparing to unpack .../59-libjpeg-turbo8_2.1.2-0ubuntu1_ppc64el.deb ... Unpacking libjpeg-turbo8:ppc64el (2.1.2-0ubuntu1) ... Selecting previously unselected package libjpeg-turbo8-dev:ppc64el. Preparing to unpack .../60-libjpeg-turbo8-dev_2.1.2-0ubuntu1_ppc64el.deb ... Unpacking libjpeg-turbo8-dev:ppc64el (2.1.2-0ubuntu1) ... Selecting previously unselected package libjpeg8:ppc64el. Preparing to unpack .../61-libjpeg8_8c-2ubuntu10_ppc64el.deb ... Unpacking libjpeg8:ppc64el (8c-2ubuntu10) ... Selecting previously unselected package libjpeg8-dev:ppc64el. Preparing to unpack .../62-libjpeg8-dev_8c-2ubuntu10_ppc64el.deb ... Unpacking libjpeg8-dev:ppc64el (8c-2ubuntu10) ... Selecting previously unselected package libjpeg-dev:ppc64el. Preparing to unpack .../63-libjpeg-dev_8c-2ubuntu10_ppc64el.deb ... Unpacking libjpeg-dev:ppc64el (8c-2ubuntu10) ... Selecting previously unselected package libaec-dev:ppc64el. Preparing to unpack .../64-libaec-dev_1.0.6-1_ppc64el.deb ... Unpacking libaec-dev:ppc64el (1.0.6-1) ... Selecting previously unselected package libssl-dev:ppc64el. Preparing to unpack .../65-libssl-dev_3.0.7-1ubuntu1_ppc64el.deb ... Unpacking libssl-dev:ppc64el (3.0.7-1ubuntu1) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../66-libhdf5-dev_1.10.8+repack1-1ubuntu1_ppc64el.deb ... Unpacking libhdf5-dev (1.10.8+repack1-1ubuntu1) ... Selecting previously unselected package libfast5-dev. Preparing to unpack .../67-libfast5-dev_0.6.5-7build1_all.deb ... Unpacking libfast5-dev (0.6.5-7build1) ... Selecting previously unselected package libhtscodecs2:ppc64el. Preparing to unpack .../68-libhtscodecs2_1.3.0-4_ppc64el.deb ... Unpacking libhtscodecs2:ppc64el (1.3.0-4) ... Selecting previously unselected package libhts3:ppc64el. Preparing to unpack .../69-libhts3_1.16+ds-3_ppc64el.deb ... Unpacking libhts3:ppc64el (1.16+ds-3) ... Selecting previously unselected package liblzma-dev:ppc64el. Preparing to unpack .../70-liblzma-dev_5.4.1-0.0_ppc64el.deb ... Unpacking liblzma-dev:ppc64el (5.4.1-0.0) ... Selecting previously unselected package libhts-dev:ppc64el. Preparing to unpack .../71-libhts-dev_1.16+ds-3_ppc64el.deb ... Unpacking libhts-dev:ppc64el (1.16+ds-3) ... Selecting previously unselected package libminimap2-dev. Preparing to unpack .../72-libminimap2-dev_2.24+dfsg-3_ppc64el.deb ... Unpacking libminimap2-dev (2.24+dfsg-3) ... Selecting previously unselected package libpkgconf3:ppc64el. Preparing to unpack .../73-libpkgconf3_1.8.1-1ubuntu2_ppc64el.deb ... Unpacking libpkgconf3:ppc64el (1.8.1-1ubuntu2) ... Selecting previously unselected package libslow5-0:ppc64el. Preparing to unpack .../74-libslow5-0_0.7.0+dfsg-2ubuntu1_ppc64el.deb ... Unpacking libslow5-0:ppc64el (0.7.0+dfsg-2ubuntu1) ... Selecting previously unselected package libslow5-dev:ppc64el. Preparing to unpack .../75-libslow5-dev_0.7.0+dfsg-2ubuntu1_ppc64el.deb ... Unpacking libslow5-dev:ppc64el (0.7.0+dfsg-2ubuntu1) ... Selecting previously unselected package libstreamvbyte0:ppc64el. Preparing to unpack .../76-libstreamvbyte0_0.4.1-4ubuntu1_ppc64el.deb ... Unpacking libstreamvbyte0:ppc64el (0.4.1-4ubuntu1) ... Selecting previously unselected package libstreamvbyte-dev:ppc64el. Preparing to unpack .../77-libstreamvbyte-dev_0.4.1-4ubuntu1_ppc64el.deb ... Unpacking libstreamvbyte-dev:ppc64el (0.4.1-4ubuntu1) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../78-pkgconf-bin_1.8.1-1ubuntu2_ppc64el.deb ... Unpacking pkgconf-bin (1.8.1-1ubuntu2) ... Selecting previously unselected package pkgconf:ppc64el. Preparing to unpack .../79-pkgconf_1.8.1-1ubuntu2_ppc64el.deb ... Unpacking pkgconf:ppc64el (1.8.1-1ubuntu2) ... Selecting previously unselected package pkg-config:ppc64el. Preparing to unpack .../80-pkg-config_1.8.1-1ubuntu2_ppc64el.deb ... Unpacking pkg-config:ppc64el (1.8.1-1ubuntu2) ... Selecting previously unselected package libeigen3-dev. Preparing to unpack .../81-libeigen3-dev_3.4.0-2ubuntu2_all.deb ... Unpacking libeigen3-dev (3.4.0-2ubuntu2) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../82-sbuild-build-depends-main-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libhtscodecs2:ppc64el (1.3.0-4) ... Setting up media-types (8.0.0) ... Setting up libpipeline1:ppc64el (1.5.7-1) ... Setting up libicu71:ppc64el (71.1-3ubuntu1) ... Setting up libstreamvbyte0:ppc64el (0.4.1-4ubuntu1) ... Setting up libpsl5:ppc64el (0.21.0-1.2build2) ... Setting up bsdextrautils (2.38.1-4ubuntu1) ... Setting up hdf5-helpers (1.10.8+repack1-1ubuntu1) ... Setting up libmagic-mgc (1:5.44-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4ubuntu3) ... Setting up libbrotli1:ppc64el (1.0.9-2build7) ... Setting up libnghttp2-14:ppc64el (1.51.0-1) ... Setting up libmagic1:ppc64el (1:5.44-2) ... Setting up libdeflate0:ppc64el (1.14-1) ... Setting up gettext-base (0.21-10) ... Setting up m4 (1.4.19-2) ... Setting up file (1:5.44-2) ... Setting up libaec0:ppc64el (1.0.6-1) ... Setting up libsasl2-modules-db:ppc64el (2.1.28+dfsg-10) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:ppc64el (1.8.1-1ubuntu2) ... Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build4) ... Setting up libstreamvbyte-dev:ppc64el (0.4.1-4ubuntu1) ... Setting up libssl-dev:ppc64el (3.0.7-1ubuntu1) ... Setting up autopoint (0.21-10) ... Setting up libslow5-0:ppc64el (0.7.0+dfsg-2ubuntu1) ... Setting up pkgconf-bin (1.8.1-1ubuntu2) ... Setting up libjpeg-turbo8:ppc64el (2.1.2-0ubuntu1) ... Setting up libsasl2-2:ppc64el (2.1.28+dfsg-10) ... Setting up libssh-4:ppc64el (0.10.4-2) ... Setting up libgfortran5:ppc64el (12.2.0-14ubuntu1) ... Setting up autoconf (2.71-3) ... Setting up liblzma-dev:ppc64el (5.4.1-0.0) ... Setting up zlib1g-dev:ppc64el (1:1.2.13.dfsg-1ubuntu4) ... Setting up libuchardet0:ppc64el (0.0.7-1build2) ... Setting up libmpdec3:ppc64el (2.5.1-2build2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libdeflate-dev:ppc64el (1.14-1) ... Setting up libelf1:ppc64el (0.188-2.1) ... Setting up libxml2:ppc64el (2.9.14+dfsg-1.1) ... Setting up libldap2:ppc64el (2.6.3+dfsg-1~exp1ubuntu1) ... Setting up libsz2:ppc64el (1.0.6-1) ... Setting up libjpeg8:ppc64el (8c-2ubuntu10) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libdw1:ppc64el (0.188-2.1) ... Setting up libjpeg-turbo8-dev:ppc64el (2.1.2-0ubuntu1) ... Setting up gettext (0.21-10) ... Setting up libtool (2.4.7-5) ... Setting up libpython3.11-stdlib:ppc64el (3.11.1-2) ... Setting up libaec-dev:ppc64el (1.0.6-1) ... Setting up libcurl3-gnutls:ppc64el (7.87.0-1ubuntu1) ... Setting up libslow5-dev:ppc64el (0.7.0+dfsg-2ubuntu1) ... Setting up libcurl4-gnutls-dev:ppc64el (7.87.0-1ubuntu1) ... Setting up pkgconf:ppc64el (1.8.1-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libminimap2-dev (2.24+dfsg-3) ... Setting up libeigen3-dev (3.4.0-2ubuntu2) ... Setting up pkg-config:ppc64el (1.8.1-1ubuntu2) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-9) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:ppc64el (7.87.0-1ubuntu1) ... Setting up libjpeg8-dev:ppc64el (8c-2ubuntu10) ... Setting up libpython3-stdlib:ppc64el (3.11.1-0ubuntu1) ... Setting up python3.11 (3.11.1-2) ... Setting up libhts3:ppc64el (1.16+ds-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libjpeg-dev:ppc64el (8c-2ubuntu10) ... Setting up libhts-dev:ppc64el (1.16+ds-3) ... Setting up python3 (3.11.1-0ubuntu1) ... Setting up man-db (2.11.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libhdf5-103-1:ppc64el (1.10.8+repack1-1ubuntu1) ... Setting up libhdf5-cpp-103-1:ppc64el (1.10.8+repack1-1ubuntu1) ... Setting up python3-lib2to3 (3.10.8-1) ... Setting up libhdf5-hl-100:ppc64el (1.10.8+repack1-1ubuntu1) ... Setting up python3-distutils (3.10.8-1) ... Setting up dh-python (5.20230109) ... Setting up debhelper (13.11.4ubuntu3) ... Setting up libhdf5-hl-cpp-100:ppc64el (1.10.8+repack1-1ubuntu1) ... Setting up libhdf5-fortran-102:ppc64el (1.10.8+repack1-1ubuntu1) ... Setting up libhdf5-hl-fortran-100:ppc64el (1.10.8+repack1-1ubuntu1) ... Setting up libhdf5-dev (1.10.8+repack1-1ubuntu1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/powerpc64le-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libfast5-dev (0.6.5-7build1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for systemd (252.4-1ubuntu1) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in amd64 arm64 armhf ppc64el riscv64) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-137-generic #154-Ubuntu SMP Thu Jan 5 17:03:14 UTC 2023 ppc64el (ppc64le) Toolchain package versions: binutils_2.40-2ubuntu1 dpkg-dev_1.21.18ubuntu3 g++-12_12.2.0-14ubuntu1 gcc-12_12.2.0-14ubuntu1 libc6-dev_2.36-0ubuntu4 libstdc++-12-dev_12.2.0-14ubuntu1 libstdc++6_12.2.0-14ubuntu1 linux-libc-dev_5.19.0-23.24 Package versions: adduser_3.129ubuntu1 advancecomp_2.5-1 apt_2.5.5 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.1 bash_5.2.15-2ubuntu1 binutils_2.40-2ubuntu1 binutils-common_2.40-2ubuntu1 binutils-powerpc64le-linux-gnu_2.40-2ubuntu1 bsdextrautils_2.38.1-4ubuntu1 bsdutils_1:2.38.1-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016ubuntu1 coreutils_9.1-1ubuntu2 cpp_4:12.2.0-1ubuntu1 cpp-12_12.2.0-14ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-9ubuntu1 debconf_1.5.82 debhelper_13.11.4ubuntu3 debianutils_5.7-0.4 debugedit_1:5.0-5 dh-autoreconf_20 dh-python_5.20230109 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-3 dpkg_1.21.18ubuntu3 dpkg-dev_1.21.18ubuntu3 dwz_0.15-1 e2fsprogs_1.46.6~rc1-1ubuntu1 fakeroot_1.30.1-1.1ubuntu1 file_1:5.44-2 findutils_4.9.0-3ubuntu1 g++_4:12.2.0-1ubuntu1 g++-12_12.2.0-14ubuntu1 gcc_4:12.2.0-1ubuntu1 gcc-12_12.2.0-14ubuntu1 gcc-12-base_12.2.0-14ubuntu1 gettext_0.21-10 gettext-base_0.21-10 gpg_2.2.40-1ubuntu2 gpg-agent_2.2.40-1ubuntu2 gpgconf_2.2.40-1ubuntu2 gpgv_2.2.40-1ubuntu2 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1ubuntu1 hdf5-helpers_1.10.8+repack1-1ubuntu1 hostname_3.23ubuntu2 init_1.65.2 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libaec-dev_1.0.6-1 libaec0_1.0.6-1 libapparmor1_3.0.8-1ubuntu1 libapt-pkg6.0_2.5.5 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan8_12.2.0-14ubuntu1 libassuan0_2.5.5-5 libatomic1_12.2.0-14ubuntu1 libattr1_1:2.5.1-4 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libbinutils_2.40-2ubuntu1 libblkid1_2.38.1-4ubuntu1 libbrotli1_1.0.9-2build7 libbz2-1.0_1.0.8-5build1 libc-bin_2.36-0ubuntu4 libc-dev-bin_2.36-0ubuntu4 libc6_2.36-0ubuntu4 libc6-dev_2.36-0ubuntu4 libcap-ng0_0.8.3-1build1 libcap2_1:2.66-3ubuntu1 libcc1-0_12.2.0-14ubuntu1 libcom-err2_1.46.6~rc1-1ubuntu1 libcrypt-dev_1:4.4.33-2 libcrypt1_1:4.4.33-2 libcryptsetup12_2:2.5.0-6ubuntu3 libctf-nobfd0_2.40-2ubuntu1 libctf0_2.40-2ubuntu1 libcurl3-gnutls_7.87.0-1ubuntu1 libcurl4_7.87.0-1ubuntu1 libcurl4-gnutls-dev_7.87.0-1ubuntu1 libdb5.3_5.3.28+dfsg2-1 libdebconfclient0_0.264ubuntu1 libdebhelper-perl_13.11.4ubuntu3 libdeflate-dev_1.14-1 libdeflate0_1.14-1 libdevmapper1.02.1_2:1.02.185-1ubuntu1 libdpkg-perl_1.21.18ubuntu3 libdw1_0.188-2.1 libeigen3-dev_3.4.0-2ubuntu2 libelf1_0.188-2.1 libexpat1_2.5.0-1 libext2fs2_1.46.6~rc1-1ubuntu1 libfakeroot_1.30.1-1.1ubuntu1 libfast5-dev_0.6.5-7build1 libfdisk1_2.38.1-4ubuntu1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.2.0-14ubuntu1 libgcc-s1_12.2.0-14ubuntu1 libgcrypt20_1.10.1-3ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_12.2.0-14ubuntu1 libgmp10_2:6.2.1+dfsg1-1.1ubuntu1 libgnutls30_3.7.8-4ubuntu1 libgomp1_12.2.0-14ubuntu1 libgpg-error0_1.46-1 libgssapi-krb5-2_1.20.1-1build1 libhdf5-103-1_1.10.8+repack1-1ubuntu1 libhdf5-cpp-103-1_1.10.8+repack1-1ubuntu1 libhdf5-dev_1.10.8+repack1-1ubuntu1 libhdf5-fortran-102_1.10.8+repack1-1ubuntu1 libhdf5-hl-100_1.10.8+repack1-1ubuntu1 libhdf5-hl-cpp-100_1.10.8+repack1-1ubuntu1 libhdf5-hl-fortran-100_1.10.8+repack1-1ubuntu1 libhogweed6_3.8.1-2 libhts-dev_1.16+ds-3 libhts3_1.16+ds-3 libhtscodecs2_1.3.0-4 libicu71_71.1-3ubuntu1 libidn2-0_2.3.3-1build1 libip4tc2_1.8.7-1ubuntu7 libisl23_0.25-1 libitm1_12.2.0-14ubuntu1 libjansson4_2.14-2 libjpeg-dev_8c-2ubuntu10 libjpeg-turbo8_2.1.2-0ubuntu1 libjpeg-turbo8-dev_2.1.2-0ubuntu1 libjpeg8_8c-2ubuntu10 libjpeg8-dev_8c-2ubuntu10 libjson-c5_0.16-2 libk5crypto3_1.20.1-1build1 libkeyutils1_1.6.3-2 libkmod2_30+20220905-1ubuntu1 libkrb5-3_1.20.1-1build1 libkrb5support0_1.20.1-1build1 libldap2_2.6.3+dfsg-1~exp1ubuntu1 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblsan0_12.2.0-14ubuntu1 liblz4-1_1.9.4-1 liblzma-dev_5.4.1-0.0 liblzma5_5.4.1-0.0 libmagic-mgc_1:5.44-2 libmagic1_1:5.44-2 libmd0_1.0.4-2 libminimap2-dev_2.24+dfsg-3 libmount1_2.38.1-4ubuntu1 libmpc3_1.3.1-1 libmpdec3_2.5.1-2build2 libmpfr6_4.2.0-1 libncurses6_6.4-2 libncursesw6_6.4-2 libnettle8_3.8.1-2 libnghttp2-14_1.51.0-1 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libp11-kit0_0.24.1-2ubuntu1 libpam-modules_1.5.2-5ubuntu1 libpam-modules-bin_1.5.2-5ubuntu1 libpam-runtime_1.5.2-5ubuntu1 libpam0g_1.5.2-5ubuntu1 libpcre2-8-0_10.42-1 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libpkgconf3_1.8.1-1ubuntu2 libpng16-16_1.6.39-2 libprocps8_2:3.3.17-7ubuntu1 libpsl5_0.21.0-1.2build2 libpython3-stdlib_3.11.1-0ubuntu1 libpython3.11-minimal_3.11.1-2 libpython3.11-stdlib_3.11.1-2 libquadmath0_12.2.0-14ubuntu1 libreadline8_8.2-1.3 librtmp1_2.4+20151223.gitfa8646d.1-2build4 libsasl2-2_2.1.28+dfsg-10 libsasl2-modules-db_2.1.28+dfsg-10 libseccomp2_2.5.4-1ubuntu2 libselinux1_3.4-1build2 libsemanage-common_3.4-1build2 libsemanage2_3.4-1build2 libsepol2_3.4-2 libslow5-0_0.7.0+dfsg-2ubuntu1 libslow5-dev_0.7.0+dfsg-2ubuntu1 libsmartcols1_2.38.1-4ubuntu1 libsqlite3-0_3.40.1-1 libss2_1.46.6~rc1-1ubuntu1 libssh-4_0.10.4-2 libssl-dev_3.0.7-1ubuntu1 libssl3_3.0.7-1ubuntu1 libstdc++-12-dev_12.2.0-14ubuntu1 libstdc++6_12.2.0-14ubuntu1 libstreamvbyte-dev_0.4.1-4ubuntu1 libstreamvbyte0_0.4.1-4ubuntu1 libsub-override-perl_0.09-4 libsystemd-shared_252.4-1ubuntu1 libsystemd0_252.4-1ubuntu1 libsz2_1.0.6-1 libtasn1-6_4.19.0-2 libtinfo6_6.4-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libtsan2_12.2.0-14ubuntu1 libubsan1_12.2.0-14ubuntu1 libuchardet0_0.0.7-1build2 libudev1_252.4-1ubuntu1 libunistring2_1.0-2 libuuid1_2.38.1-4ubuntu1 libxml2_2.9.14+dfsg-1.1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg2-3 linux-libc-dev_5.19.0-23.24 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-1ubuntu1 logsave_1.46.6~rc1-1ubuntu1 lsb-base_11.5 lto-disabled-list_37 m4_1.4.19-2 make_4.3-4.1build1 man-db_2.11.2-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38.1-4ubuntu1 ncurses-base_6.4-2 ncurses-bin_6.4-2 openssl_3.0.7-1ubuntu1 optipng_0.7.7-2build1 passwd_1:4.13+dfsg1-1ubuntu1 patch_2.7.6-7build2 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-7 pinentry-curses_1.2.1-1ubuntu1 pkg-config_1.8.1-1ubuntu2 pkgbinarymangler_151 pkgconf_1.8.1-1ubuntu2 pkgconf-bin_1.8.1-1ubuntu2 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:3.3.17-7ubuntu1 python3_3.11.1-0ubuntu1 python3-distutils_3.10.8-1 python3-lib2to3_3.10.8-1 python3-minimal_3.11.1-0ubuntu1 python3.11_3.11.1-2 python3.11-minimal_3.11.1-2 readline-common_8.2-1.3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.17+nmu1 systemd_252.4-1ubuntu1 systemd-sysv_252.4-1ubuntu1 sysvinit-utils_3.05-7ubuntu2 tar_1.34+dfsg-1.1 tzdata_2022g-2ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_33ubuntu1 util-linux_2.38.1-4ubuntu1 util-linux-extra_2.38.1-4ubuntu1 xz-utils_5.4.1-0.0 zlib1g_1:1.2.13.dfsg-1ubuntu4 zlib1g-dev_1:1.2.13.dfsg-1ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: nanopolish Binary: nanopolish Architecture: amd64 arm64 armhf ppc64el riscv64 Version: 0.14.0-1ubuntu1 Maintainer: Ubuntu Developers Uploaders: Andreas Tille Homepage: https://github.com/jts/nanopolish Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/nanopolish Vcs-Git: https://salsa.debian.org/med-team/nanopolish.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3, zlib1g-dev, libfast5-dev, libhts-dev, libeigen3-dev, libminimap2-dev, libstreamvbyte-dev, libslow5-dev Package-List: nanopolish deb science optional arch=amd64,arm64,armhf,ppc64el,riscv64 Checksums-Sha1: a26c2a1a0f41a0e3fef52dee3d6ef1aea11e0266 4073583 nanopolish_0.14.0.orig.tar.gz 5af42c6351fa76123907c6cc6635ff6c6c2a478e 9120 nanopolish_0.14.0-1ubuntu1.debian.tar.xz Checksums-Sha256: bcc1a7e2d23941592d817da3af9165b3843ae52b11a3ca5983d6417f1614ef78 4073583 nanopolish_0.14.0.orig.tar.gz 748a9f4f488efcaed612ea2844d35d7cd11282e8cb0a1bce47ad841e7ca51866 9120 nanopolish_0.14.0-1ubuntu1.debian.tar.xz Files: 90b445d40348427fd009bea3e04f0249 4073583 nanopolish_0.14.0.orig.tar.gz 61105d478de743f68337caadacb032ad 9120 nanopolish_0.14.0-1ubuntu1.debian.tar.xz Original-Maintainer: Debian Med Packaging Team -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEfm2fYq1zA4h6PB3QSRbXqx16OAQFAmPRmsQACgkQSRbXqx16 OAR+Xg//etrjSt21luN11zyelJc135Olt/FtJtq884P3zdSaz/hY8+paeShItrDa EVwFexRRXjXDC3q3NxzVaqTJxhkjJacQ0qq6jPFs+gUH/ttaa/N5HZIP2OdYcnRS 5LfPzDfgBOSg2QX3WuJizRwryEZGuSGZEmmatFZTKweKpAFfrkSwYjxbOGhK1wmU X8StEBl4rODXHwKhsMOQ/uC0tM+IaCE/tuaBOpBBuOb4j2OE1LFte62yHPVHe7/m m8LMVaGLaXrQx34sREwA5gaBCXoguFhTe5Gdb7FS9vKO/jkNhLHdTBQHq/0u2Ug3 vaJEzRNUD8ypO8VB38M0HZrYBfWVa6WekhKnek9oy+80MME1MkOdxwI8PB8x4jOa hY2CYdz/ePDV7KWNhQxlOtCBN7SR05B/8X48MOuge5T9DkEdHO0Nz1HKqqKflJFD mXjOK5hB/bcz6yJzpxp3zLK5DoF57gCSmBpPfqEjItQI7lzmwpB+1ScVmObYWiO5 ccvQgnMQlWDcx+D7ejVk6dr0aTY3jd96QqB2QacxuW0iCska6XS8SrNkMZpbjWxb ixG56ii5468U6LFSeAF0XV4uQhUDgTBLbYkAz8Jy6PrRCySbzeMo71uYi6cWtEDG XYFsQEkj8gvCei2ifvBjEHrgpuR1XppHPyLMsmqq/J2UtRoO4/w= =em1P -----END PGP SIGNATURE----- gpgv: Signature made Wed Jan 25 21:10:28 2023 UTC gpgv: using RSA key 7E6D9F62AD7303887A3C1DD04916D7AB1D7A3804 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./nanopolish_0.14.0-1ubuntu1.dsc: no acceptable signature found dpkg-source: info: extracting nanopolish in /<> dpkg-source: info: unpacking nanopolish_0.14.0.orig.tar.gz dpkg-source: info: unpacking nanopolish_0.14.0-1ubuntu1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add-shebang-to-script.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying fix_remaining_python_interpreters.patch dpkg-source: info: applying staticMinimap2Library.patch dpkg-source: info: applying link_ext_slow5lib.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-25524223 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-25524223 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-25524223 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package nanopolish dpkg-buildpackage: info: source version 0.14.0-1ubuntu1 dpkg-buildpackage: info: source distribution lunar dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' sed -i~ 's/^.depend: .*/.depend:/' Makefile touch .depend /usr/bin/make clean make[2]: Entering directory '/<>' rm -f nanopolish nanopolish_test src/alignment/nanopolish_alignment_db.o src/alignment/nanopolish_anchor.o src/alignment/nanopolish_eventalign.o src/basemods/nanopolish_basemods.o src/common/fs_support.o src/common/logsum.o src/common/nanopolish_alphabet.o src/common/nanopolish_bam_processor.o src/common/nanopolish_bam_utils.o src/common/nanopolish_common.o src/common/nanopolish_iupac.o src/common/nanopolish_klcs.o src/common/nanopolish_variant.o src/hmm/nanopolish_duration_model.o src/hmm/nanopolish_profile_hmm.o src/hmm/nanopolish_profile_hmm_r7.o src/hmm/nanopolish_profile_hmm_r9.o src/hmm/nanopolish_transition_parameters.o src/io/nanopolish_fast5_io.o src/io/nanopolish_fast5_loader.o src/io/nanopolish_fast5_processor.o src/nanopolish_call_methylation.o src/nanopolish_call_variants.o src/nanopolish_detect_polyi.o src/nanopolish_fast5_check.o src/nanopolish_haplotype.o src/nanopolish_index.o src/nanopolish_methyltrain.o src/nanopolish_phase_reads.o src/nanopolish_polya_estimator.o src/nanopolish_raw_loader.o src/nanopolish_read_db.o src/nanopolish_scorereads.o src/nanopolish_squiggle_read.o src/nanopolish_train_poremodel_from_basecalls.o src/nanopolish_variant_db.o src/nanopolish_vcf2fasta.o src/pore_model/nanopolish_model_names.o src/pore_model/nanopolish_pore_model_set.o src/pore_model/nanopolish_poremodel.o src/training_core.o src/thirdparty/fet.o src/thirdparty/scrappie/event_detection.o src/thirdparty/scrappie/scrappie_common.o src/thirdparty/stdaln.o \ src/main/nanopolish.o src/test/nanopolish_test.o make[2]: Leaving directory '/<>' rm -f .depend mv Makefile~ Makefile make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch --with python3 dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>' rm -f ./.depend g++ -o src/main/nanopolish.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/main/nanopolish.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -MM src/alignment/nanopolish_alignment_db.cpp src/alignment/nanopolish_anchor.cpp src/alignment/nanopolish_eventalign.cpp src/basemods/nanopolish_basemods.cpp src/common/fs_support.cpp src/common/logsum.cpp src/common/nanopolish_alphabet.cpp src/common/nanopolish_bam_processor.cpp src/common/nanopolish_bam_utils.cpp src/common/nanopolish_common.cpp src/common/nanopolish_iupac.cpp src/common/nanopolish_klcs.cpp src/common/nanopolish_variant.cpp src/hmm/nanopolish_duration_model.cpp src/hmm/nanopolish_profile_hmm.cpp src/hmm/nanopolish_profile_hmm_r7.cpp src/hmm/nanopolish_profile_hmm_r9.cpp src/hmm/nanopolish_transition_parameters.cpp src/io/nanopolish_fast5_io.cpp src/io/nanopolish_fast5_loader.cpp src/io/nanopolish_fast5_processor.cpp src/nanopolish_call_methylation.cpp src/nanopolish_call_variants.cpp src/nanopolish_detect_polyi.cpp src/nanopolish_fast5_check.cpp src/nanopolish_haplotype.cpp src/nanopolish_index.cpp src/nanopolish_methyltrain.cpp src/nanopolish_phase_reads.cpp src/nanopolish_polya_estimator.cpp src/nanopolish_raw_loader.cpp src/nanopolish_read_db.cpp src/nanopolish_scorereads.cpp src/nanopolish_squiggle_read.cpp src/nanopolish_train_poremodel_from_basecalls.cpp src/nanopolish_variant_db.cpp src/nanopolish_vcf2fasta.cpp src/pore_model/nanopolish_model_names.cpp src/pore_model/nanopolish_pore_model_set.cpp src/pore_model/nanopolish_poremodel.cpp src/training_core.cpp src/thirdparty/fet.c src/thirdparty/scrappie/event_detection.c src/thirdparty/scrappie/scrappie_common.c src/thirdparty/stdaln.c > ./.depend; g++ -o src/alignment/nanopolish_alignment_db.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/alignment/nanopolish_alignment_db.cpp g++ -o src/alignment/nanopolish_anchor.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/alignment/nanopolish_anchor.cpp g++ -o src/alignment/nanopolish_eventalign.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/alignment/nanopolish_eventalign.cpp g++ -o src/basemods/nanopolish_basemods.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/basemods/nanopolish_basemods.cpp g++ -o src/common/fs_support.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/common/fs_support.cpp g++ -o src/common/logsum.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/common/logsum.cpp g++ -o src/common/nanopolish_alphabet.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/common/nanopolish_alphabet.cpp g++ -o src/common/nanopolish_bam_processor.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/common/nanopolish_bam_processor.cpp g++ -o src/common/nanopolish_bam_utils.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/common/nanopolish_bam_utils.cpp g++ -o src/common/nanopolish_common.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/common/nanopolish_common.cpp g++ -o src/common/nanopolish_iupac.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/common/nanopolish_iupac.cpp g++ -o src/common/nanopolish_klcs.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/common/nanopolish_klcs.cpp g++ -o src/common/nanopolish_variant.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/common/nanopolish_variant.cpp g++ -o src/hmm/nanopolish_duration_model.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/hmm/nanopolish_duration_model.cpp g++ -o src/hmm/nanopolish_profile_hmm.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/hmm/nanopolish_profile_hmm.cpp g++ -o src/hmm/nanopolish_profile_hmm_r7.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/hmm/nanopolish_profile_hmm_r7.cpp g++ -o src/hmm/nanopolish_profile_hmm_r9.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/hmm/nanopolish_profile_hmm_r9.cpp g++ -o src/hmm/nanopolish_transition_parameters.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/hmm/nanopolish_transition_parameters.cpp g++ -o src/io/nanopolish_fast5_io.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/io/nanopolish_fast5_io.cpp g++ -o src/io/nanopolish_fast5_loader.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/io/nanopolish_fast5_loader.cpp g++ -o src/io/nanopolish_fast5_processor.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/io/nanopolish_fast5_processor.cpp g++ -o src/nanopolish_call_methylation.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/nanopolish_call_methylation.cpp g++ -o src/nanopolish_call_variants.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/nanopolish_call_variants.cpp g++ -o src/nanopolish_detect_polyi.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/nanopolish_detect_polyi.cpp src/nanopolish_detect_polyi.cpp: In function ‘void dpi_estimate_polya_for_single_read(const ReadDB&, const faidx_t*, FILE*, const bam_hdr_t*, const bam1_t*, size_t, int, int)’: src/nanopolish_detect_polyi.cpp:1040:39: warning: format ‘%d’ expects argument of type ‘int’, but argument 5 has type ‘long int’ [-Wformat=] 1040 | fprintf(out_fp, "%s\t%s\t%d\t-1.0\t-1.0\t-1.0\t-1.0\t-1.00\t-1.00\tREAD_FAILED_LOAD\n", | ~^ | | | int | %ld 1041 | read_name.c_str(), ref_name.c_str(), record->core.pos); | ~~~~~~~~~~~~~~~~ | | | long int src/nanopolish_detect_polyi.cpp:1105:35: warning: format ‘%d’ expects argument of type ‘int’, but argument 5 has type ‘long int’ [-Wformat=] 1105 | fprintf(out_fp, "%s\t%s\t%d\t%.1lf\t%.1lf\t%.1lf\t%.1lf\t%.2lf\t%.2lf\t%s\t%s\n", | ~^ | | | int | %ld 1106 | read_name.c_str(), ref_name.c_str(), record->core.pos, | ~~~~~~~~~~~~~~~~ | | | long int g++ -o src/nanopolish_fast5_check.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/nanopolish_fast5_check.cpp g++ -o src/nanopolish_haplotype.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/nanopolish_haplotype.cpp g++ -o src/nanopolish_index.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/nanopolish_index.cpp g++ -o src/nanopolish_methyltrain.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/nanopolish_methyltrain.cpp g++ -o src/nanopolish_phase_reads.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/nanopolish_phase_reads.cpp g++ -o src/nanopolish_polya_estimator.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/nanopolish_polya_estimator.cpp g++ -o src/nanopolish_raw_loader.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/nanopolish_raw_loader.cpp src/nanopolish_polya_estimator.cpp: In function ‘void estimate_polya_for_single_read(const ReadDB&, const faidx_t*, FILE*, const bam_hdr_t*, const bam1_t*, size_t, int, int)’: src/nanopolish_polya_estimator.cpp:765:39: warning: format ‘%d’ expects argument of type ‘int’, but argument 5 has type ‘long int’ [-Wformat=] 765 | fprintf(out_fp, "%s\t%s\t%d\t-1.0\t-1.0\t-1.0\t-1.0\t-1.00\t-1.00\tREAD_FAILED_LOAD\n", | ~^ | | | int | %ld 766 | read_name.c_str(), ref_name.c_str(), record->core.pos); | ~~~~~~~~~~~~~~~~ | | | long int src/nanopolish_polya_estimator.cpp:823:35: warning: format ‘%d’ expects argument of type ‘int’, but argument 5 has type ‘long int’ [-Wformat=] 823 | fprintf(out_fp, "%s\t%s\t%d\t%.1lf\t%.1lf\t%.1lf\t%.1lf\t%.2lf\t%.2lf\t%s\n", | ~^ | | | int | %ld 824 | read_name.c_str(), ref_name.c_str(), record->core.pos, | ~~~~~~~~~~~~~~~~ | | | long int g++ -o src/nanopolish_read_db.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/nanopolish_read_db.cpp g++ -o src/nanopolish_scorereads.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/nanopolish_scorereads.cpp g++ -o src/nanopolish_squiggle_read.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/nanopolish_squiggle_read.cpp g++ -o src/nanopolish_train_poremodel_from_basecalls.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/nanopolish_train_poremodel_from_basecalls.cpp g++ -o src/nanopolish_variant_db.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/nanopolish_variant_db.cpp g++ -o src/nanopolish_vcf2fasta.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/nanopolish_vcf2fasta.cpp g++ -o src/pore_model/nanopolish_model_names.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/pore_model/nanopolish_model_names.cpp g++ -o src/pore_model/nanopolish_pore_model_set.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/pore_model/nanopolish_pore_model_set.cpp g++ -o src/pore_model/nanopolish_poremodel.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/pore_model/nanopolish_poremodel.cpp g++ -o src/training_core.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/training_core.cpp cc -o src/thirdparty/fet.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/thirdparty/fet.c cc -o src/thirdparty/scrappie/event_detection.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/thirdparty/scrappie/event_detection.c cc -o src/thirdparty/scrappie/scrappie_common.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/thirdparty/scrappie/scrappie_common.c cc -o src/thirdparty/stdaln.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/thirdparty/stdaln.c src/thirdparty/stdaln.c: In function ‘aln_local_core’: src/thirdparty/stdaln.c:756:17: warning: ‘free’ called on pointer ‘MEM[(int * *)_406]’ with nonzero offset 4 [-Wfree-nonheap-object] 756 | free(s_array[i]); | ^~~~~~~~~~~~~~~~ g++ -o nanopolish -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/main/nanopolish.o src/alignment/nanopolish_alignment_db.o src/alignment/nanopolish_anchor.o src/alignment/nanopolish_eventalign.o src/basemods/nanopolish_basemods.o src/common/fs_support.o src/common/logsum.o src/common/nanopolish_alphabet.o src/common/nanopolish_bam_processor.o src/common/nanopolish_bam_utils.o src/common/nanopolish_common.o src/common/nanopolish_iupac.o src/common/nanopolish_klcs.o src/common/nanopolish_variant.o src/hmm/nanopolish_duration_model.o src/hmm/nanopolish_profile_hmm.o src/hmm/nanopolish_profile_hmm_r7.o src/hmm/nanopolish_profile_hmm_r9.o src/hmm/nanopolish_transition_parameters.o src/io/nanopolish_fast5_io.o src/io/nanopolish_fast5_loader.o src/io/nanopolish_fast5_processor.o src/nanopolish_call_methylation.o src/nanopolish_call_variants.o src/nanopolish_detect_polyi.o src/nanopolish_fast5_check.o src/nanopolish_haplotype.o src/nanopolish_index.o src/nanopolish_methyltrain.o src/nanopolish_phase_reads.o src/nanopolish_polya_estimator.o src/nanopolish_raw_loader.o src/nanopolish_read_db.o src/nanopolish_scorereads.o src/nanopolish_squiggle_read.o src/nanopolish_train_poremodel_from_basecalls.o src/nanopolish_variant_db.o src/nanopolish_vcf2fasta.o src/pore_model/nanopolish_model_names.o src/pore_model/nanopolish_pore_model_set.o src/pore_model/nanopolish_poremodel.o src/training_core.o src/thirdparty/fet.o src/thirdparty/scrappie/event_detection.o src/thirdparty/scrappie/scrappie_common.o src/thirdparty/stdaln.o -lz -lrt -lhdf5 -lhts -lminimap2 -lslow5 -lstreamvbyte -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -L/usr/lib/powerpc64le-linux-gnu/hdf5/serial make[2]: Leaving directory '/<>' /usr/bin/make nanopolish_test make[2]: Entering directory '/<>' g++ -o src/test/nanopolish_test.o -c -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/test/nanopolish_test.cpp In file included from /usr/include/powerpc64le-linux-gnu/c++/12/bits/c++allocator.h:33, from /usr/include/c++/12/bits/allocator.h:46, from /usr/include/c++/12/string:41, from src/test/nanopolish_test.cpp:10: In member function ‘std::__new_allocator::deallocate(float*, unsigned long)’, inlined from ‘std::allocator_traits >::deallocate(std::allocator&, float*, unsigned long)’ at /usr/include/c++/12/bits/alloc_traits.h:496:23, inlined from ‘std::_Vector_base >::_M_deallocate(float*, unsigned long)’ at /usr/include/c++/12/bits/stl_vector.h:387:19, inlined from ‘std::_Vector_base >::~_Vector_base()’ at /usr/include/c++/12/bits/stl_vector.h:366:15, inlined from ‘std::vector >::~vector()’ at /usr/include/c++/12/bits/stl_vector.h:733:7, inlined from ‘generate_training_data(ParamMixture const&, unsigned long, std::array const&, std::array const&, std::array const&)’ at src/test/nanopolish_test.cpp:534:1: /usr/include/c++/12/bits/new_allocator.h:158:33: warning: ‘operator delete(void*)’ called on pointer ‘_832’ with nonzero offset [4, 658812288346769700] [-Wfree-nonheap-object] 158 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In member function ‘std::__new_allocator::allocate(unsigned long, void const*)’, inlined from ‘std::allocator_traits >::allocate(std::allocator&, unsigned long)’ at /usr/include/c++/12/bits/alloc_traits.h:464:28, inlined from ‘std::_Vector_base >::_M_allocate(unsigned long)’ at /usr/include/c++/12/bits/stl_vector.h:378:33, inlined from ‘std::_Vector_base >::_M_create_storage(unsigned long)’ at /usr/include/c++/12/bits/stl_vector.h:395:44, inlined from ‘std::_Vector_base >::_Vector_base(unsigned long, std::allocator const&)’ at /usr/include/c++/12/bits/stl_vector.h:332:26, inlined from ‘std::vector >::vector(unsigned long, float const&, std::allocator const&)’ at /usr/include/c++/12/bits/stl_vector.h:566:47, inlined from ‘generate_training_data(ParamMixture const&, unsigned long, std::array const&, std::array const&, std::array const&)’ at src/test/nanopolish_test.cpp:486:58: /usr/include/c++/12/bits/new_allocator.h:137:55: note: returned from ‘operator new(unsigned long)’ 137 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ g++ -o nanopolish_test -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/nanopolish-0.14.0-1ubuntu1 -O3 -flto -std=c++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I/usr/include/eigen3 -I/usr/include/minimap2 -I/usr/include/minimap2 -I./src -I./src/hmm -I./src/thirdparty -I./src/thirdparty/scrappie -I./src/common -I./src/alignment -I./src/pore_model -I./src/io -I./src/basemods -fPIC src/test/nanopolish_test.o src/alignment/nanopolish_alignment_db.o src/alignment/nanopolish_anchor.o src/alignment/nanopolish_eventalign.o src/basemods/nanopolish_basemods.o src/common/fs_support.o src/common/logsum.o src/common/nanopolish_alphabet.o src/common/nanopolish_bam_processor.o src/common/nanopolish_bam_utils.o src/common/nanopolish_common.o src/common/nanopolish_iupac.o src/common/nanopolish_klcs.o src/common/nanopolish_variant.o src/hmm/nanopolish_duration_model.o src/hmm/nanopolish_profile_hmm.o src/hmm/nanopolish_profile_hmm_r7.o src/hmm/nanopolish_profile_hmm_r9.o src/hmm/nanopolish_transition_parameters.o src/io/nanopolish_fast5_io.o src/io/nanopolish_fast5_loader.o src/io/nanopolish_fast5_processor.o src/nanopolish_call_methylation.o src/nanopolish_call_variants.o src/nanopolish_detect_polyi.o src/nanopolish_fast5_check.o src/nanopolish_haplotype.o src/nanopolish_index.o src/nanopolish_methyltrain.o src/nanopolish_phase_reads.o src/nanopolish_polya_estimator.o src/nanopolish_raw_loader.o src/nanopolish_read_db.o src/nanopolish_scorereads.o src/nanopolish_squiggle_read.o src/nanopolish_train_poremodel_from_basecalls.o src/nanopolish_variant_db.o src/nanopolish_vcf2fasta.o src/pore_model/nanopolish_model_names.o src/pore_model/nanopolish_pore_model_set.o src/pore_model/nanopolish_poremodel.o src/training_core.o src/thirdparty/fet.o src/thirdparty/scrappie/event_detection.o src/thirdparty/scrappie/scrappie_common.o src/thirdparty/stdaln.o -lz -lrt -lhdf5 -lhts -lminimap2 -lslow5 -lstreamvbyte -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -L/usr/lib/powerpc64le-linux-gnu/hdf5/serial In member function ‘deallocate’, inlined from ‘deallocate’ at /usr/include/c++/12/bits/alloc_traits.h:496:23, inlined from ‘_M_deallocate’ at /usr/include/c++/12/bits/stl_vector.h:387:19, inlined from ‘__dt_base ’ at /usr/include/c++/12/bits/stl_vector.h:366:15, inlined from ‘__dt_base ’ at /usr/include/c++/12/bits/stl_vector.h:733:7, inlined from ‘generate_training_data’ at src/test/nanopolish_test.cpp:534:1, inlined from ‘____C_A_T_C_H____T_E_S_T____536’ at src/test/nanopolish_test.cpp:560:63: /usr/include/c++/12/bits/new_allocator.h:158:33: warning: ‘operator delete’ called on pointer ‘_788’ with nonzero offset [4, 658812288346769700] [-Wfree-nonheap-object] 158 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In member function ‘allocate’, inlined from ‘allocate’ at /usr/include/c++/12/bits/alloc_traits.h:464:28, inlined from ‘_M_allocate’ at /usr/include/c++/12/bits/stl_vector.h:378:33, inlined from ‘_M_create_storage’ at /usr/include/c++/12/bits/stl_vector.h:395:44, inlined from ‘__ct ’ at /usr/include/c++/12/bits/stl_vector.h:332:26, inlined from ‘__ct ’ at /usr/include/c++/12/bits/stl_vector.h:566:47, inlined from ‘generate_training_data’ at src/test/nanopolish_test.cpp:486:58, inlined from ‘____C_A_T_C_H____T_E_S_T____536’ at src/test/nanopolish_test.cpp:560:63: /usr/include/c++/12/bits/new_allocator.h:137:55: note: returned from ‘operator new’ 137 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' echo "Since we need the executable created inside build time test in autopkgtest this is enforced in dh_auto_build to circumvent nocheck." Since we need the executable created inside build time test in autopkgtest this is enforced in dh_auto_build to circumvent nocheck. make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/nanopolish/ -a debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install for pl in `find debian -name "*.pl"` ; do \ sed -i '1s?^#!/usr/bin/env.*perl?#!/usr/bin/perl?' ${pl} ; \ done for pl in `grep -Rl '#![[:space:]]*/usr/bin/env *python' debian/*/usr/*` ; do \ sed -i '1s?^#!.*python.*?#!/usr/bin/python3?' ${pl} ; \ done make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_python3 -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian -name *.fast5 -exec chmod -x \{\} \; make[1]: Leaving directory '/<>' dh_missing -a dh_dwz -a dh_strip -a debugedit: debian/nanopolish/usr/bin/nanopolish: Unknown DWARF DW_FORM_0x1f21 588e2141a36647d11ebf6b91777f7d50183abb0a debugedit: debian/nanopolish/usr/lib/nanopolish/nanopolish_test: Unknown DWARF DW_FORM_0x1f21 9e639f69db3f0bd633d333714f8ca116119376a7 dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/nanopolish/usr/bin/nanopolish debian/nanopolish/usr/lib/nanopolish/nanopolish_test were not linked against libstreamvbyte.so.0 (they use none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 151 INFO: pkgstriptranslations version 151 pkgstriptranslations: processing nanopolish (in debian/nanopolish); do_strip: , oemstrip: pkgstriptranslations: processing nanopolish-dbgsym (in debian/.debhelper/nanopolish/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/nanopolish/DEBIAN/control, package nanopolish, directory debian/nanopolish pkgstripfiles: processing control file: debian/.debhelper/nanopolish/dbgsym-root/DEBIAN/control, package nanopolish-dbgsym, directory debian/.debhelper/nanopolish/dbgsym-root dpkg-deb: building package 'nanopolish-dbgsym' in 'debian/.debhelper/scratch-space/build-nanopolish/nanopolish-dbgsym_0.14.0-1ubuntu1_ppc64el.deb'. pkgstripfiles: Truncating usr/share/doc/nanopolish/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package nanopolish ... pkgstripfiles: No PNG files. dpkg-deb: building package 'nanopolish' in '../nanopolish_0.14.0-1ubuntu1_ppc64el.deb'. Renaming nanopolish-dbgsym_0.14.0-1ubuntu1_ppc64el.deb to nanopolish-dbgsym_0.14.0-1ubuntu1_ppc64el.ddeb dpkg-genbuildinfo --build=any -O../nanopolish_0.14.0-1ubuntu1_ppc64el.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../nanopolish_0.14.0-1ubuntu1_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-01-26T17:34:00Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ nanopolish_0.14.0-1ubuntu1_ppc64el.changes: ------------------------------------------- Format: 1.8 Date: Wed, 25 Jan 2023 11:31:01 -0500 Source: nanopolish Binary: nanopolish Built-For-Profiles: noudeb Architecture: ppc64el Version: 0.14.0-1ubuntu1 Distribution: lunar-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: William 'jawn-smith' Wilson Description: nanopolish - consensus caller for nanopore sequencing data Changes: nanopolish (0.14.0-1ubuntu1) lunar; urgency=medium . * Disable building on s390x to resolve missing dependencies Checksums-Sha1: 25ca7ddd9c9c0bf855920e937915d60705ba1a4e 6376928 nanopolish-dbgsym_0.14.0-1ubuntu1_ppc64el.ddeb 6f5c0f6e8d041a4ec90f86a7d497909a7a9ccc2d 8051 nanopolish_0.14.0-1ubuntu1_ppc64el.buildinfo 22948f5c15bc1a7a71d56adff757dfecf7d506f1 2408548 nanopolish_0.14.0-1ubuntu1_ppc64el.deb Checksums-Sha256: 3e2c645b37016523b6f2dc8e0b630cd7773e1c25965755374bc8bb66d1d5e182 6376928 nanopolish-dbgsym_0.14.0-1ubuntu1_ppc64el.ddeb 3086855d3f728956d44d74eb32c060f33a3f6a2c440f48870916d795d26c36cb 8051 nanopolish_0.14.0-1ubuntu1_ppc64el.buildinfo 14c10a9cffd666143db986f22bfeaa05a3711bd50533722b5fe078359895b8b6 2408548 nanopolish_0.14.0-1ubuntu1_ppc64el.deb Files: 321d28e5d4e9b5b6a299d678e752bdca 6376928 debug optional nanopolish-dbgsym_0.14.0-1ubuntu1_ppc64el.ddeb 0a2c4b6c7765366467bed4c74b358c97 8051 science optional nanopolish_0.14.0-1ubuntu1_ppc64el.buildinfo c2079870597d490e49368028ca23bf08 2408548 science optional nanopolish_0.14.0-1ubuntu1_ppc64el.deb Original-Maintainer: Debian Med Packaging Team /<>/nanopolish_0.14.0-1ubuntu1_ppc64el.changes.new could not be renamed to /<>/nanopolish_0.14.0-1ubuntu1_ppc64el.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: nanopolish Binary: nanopolish nanopolish-dbgsym Architecture: ppc64el Version: 0.14.0-1ubuntu1 Checksums-Md5: 321d28e5d4e9b5b6a299d678e752bdca 6376928 nanopolish-dbgsym_0.14.0-1ubuntu1_ppc64el.ddeb c2079870597d490e49368028ca23bf08 2408548 nanopolish_0.14.0-1ubuntu1_ppc64el.deb Checksums-Sha1: 25ca7ddd9c9c0bf855920e937915d60705ba1a4e 6376928 nanopolish-dbgsym_0.14.0-1ubuntu1_ppc64el.ddeb 22948f5c15bc1a7a71d56adff757dfecf7d506f1 2408548 nanopolish_0.14.0-1ubuntu1_ppc64el.deb Checksums-Sha256: 3e2c645b37016523b6f2dc8e0b630cd7773e1c25965755374bc8bb66d1d5e182 6376928 nanopolish-dbgsym_0.14.0-1ubuntu1_ppc64el.ddeb 14c10a9cffd666143db986f22bfeaa05a3711bd50533722b5fe078359895b8b6 2408548 nanopolish_0.14.0-1ubuntu1_ppc64el.deb Build-Origin: Ubuntu Build-Architecture: ppc64el Build-Date: Thu, 26 Jan 2023 17:34:00 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-10), autotools-dev (= 20220109.1), base-files (= 12.3ubuntu1), base-passwd (= 3.6.1), bash (= 5.2.15-2ubuntu1), binutils (= 2.40-2ubuntu1), binutils-common (= 2.40-2ubuntu1), binutils-powerpc64le-linux-gnu (= 2.40-2ubuntu1), bsdextrautils (= 2.38.1-4ubuntu1), bsdutils (= 1:2.38.1-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), coreutils (= 9.1-1ubuntu2), cpp (= 4:12.2.0-1ubuntu1), cpp-12 (= 12.2.0-14ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-9ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.4ubuntu3), debianutils (= 5.7-0.4), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-python (= 5.20230109), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-3), dpkg (= 1.21.18ubuntu3), dpkg-dev (= 1.21.18ubuntu3), dwz (= 0.15-1), file (= 1:5.44-2), findutils (= 4.9.0-3ubuntu1), g++ (= 4:12.2.0-1ubuntu1), g++-12 (= 12.2.0-14ubuntu1), gcc (= 4:12.2.0-1ubuntu1), gcc-12 (= 12.2.0-14ubuntu1), gcc-12-base (= 12.2.0-14ubuntu1), gettext (= 0.21-10), gettext-base (= 0.21-10), grep (= 3.8-3), groff-base (= 1.22.4-9), gzip (= 1.12-1ubuntu1), hdf5-helpers (= 1.10.8+repack1-1ubuntu1), hostname (= 3.23ubuntu2), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libaec-dev (= 1.0.6-1), libaec0 (= 1.0.6-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 12.2.0-14ubuntu1), libatomic1 (= 12.2.0-14ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.0.7-1.1), libaudit1 (= 1:3.0.7-1.1), libbinutils (= 2.40-2ubuntu1), libblkid1 (= 2.38.1-4ubuntu1), libbrotli1 (= 1.0.9-2build7), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.36-0ubuntu4), libc-dev-bin (= 2.36-0ubuntu4), libc6 (= 2.36-0ubuntu4), libc6-dev (= 2.36-0ubuntu4), libcap-ng0 (= 0.8.3-1build1), libcap2 (= 1:2.66-3ubuntu1), libcc1-0 (= 12.2.0-14ubuntu1), libcom-err2 (= 1.46.6~rc1-1ubuntu1), libcrypt-dev (= 1:4.4.33-2), libcrypt1 (= 1:4.4.33-2), libctf-nobfd0 (= 2.40-2ubuntu1), libctf0 (= 2.40-2ubuntu1), libcurl3-gnutls (= 7.87.0-1ubuntu1), libcurl4 (= 7.87.0-1ubuntu1), libcurl4-gnutls-dev (= 7.87.0-1ubuntu1), libdb5.3 (= 5.3.28+dfsg2-1), libdebconfclient0 (= 0.264ubuntu1), libdebhelper-perl (= 13.11.4ubuntu3), libdeflate-dev (= 1.14-1), libdeflate0 (= 1.14-1), libdpkg-perl (= 1.21.18ubuntu3), libdw1 (= 0.188-2.1), libeigen3-dev (= 3.4.0-2ubuntu2), libelf1 (= 0.188-2.1), libexpat1 (= 2.5.0-1), libfast5-dev (= 0.6.5-7build1), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-12-dev (= 12.2.0-14ubuntu1), libgcc-s1 (= 12.2.0-14ubuntu1), libgcrypt20 (= 1.10.1-3ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgfortran5 (= 12.2.0-14ubuntu1), libgmp10 (= 2:6.2.1+dfsg1-1.1ubuntu1), libgnutls30 (= 3.7.8-4ubuntu1), libgomp1 (= 12.2.0-14ubuntu1), libgpg-error0 (= 1.46-1), libgssapi-krb5-2 (= 1.20.1-1build1), libhdf5-103-1 (= 1.10.8+repack1-1ubuntu1), libhdf5-cpp-103-1 (= 1.10.8+repack1-1ubuntu1), libhdf5-dev (= 1.10.8+repack1-1ubuntu1), libhdf5-fortran-102 (= 1.10.8+repack1-1ubuntu1), libhdf5-hl-100 (= 1.10.8+repack1-1ubuntu1), libhdf5-hl-cpp-100 (= 1.10.8+repack1-1ubuntu1), libhdf5-hl-fortran-100 (= 1.10.8+repack1-1ubuntu1), libhogweed6 (= 3.8.1-2), libhts-dev (= 1.16+ds-3), libhts3 (= 1.16+ds-3), libhtscodecs2 (= 1.3.0-4), libicu71 (= 71.1-3ubuntu1), libidn2-0 (= 2.3.3-1build1), libisl23 (= 0.25-1), libitm1 (= 12.2.0-14ubuntu1), libjansson4 (= 2.14-2), libjpeg-dev (= 8c-2ubuntu10), libjpeg-turbo8 (= 2.1.2-0ubuntu1), libjpeg-turbo8-dev (= 2.1.2-0ubuntu1), libjpeg8 (= 8c-2ubuntu10), libjpeg8-dev (= 8c-2ubuntu10), libk5crypto3 (= 1.20.1-1build1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-1build1), libkrb5support0 (= 1.20.1-1build1), libldap2 (= 2.6.3+dfsg-1~exp1ubuntu1), liblsan0 (= 12.2.0-14ubuntu1), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.4.1-0.0), liblzma5 (= 5.4.1-0.0), libmagic-mgc (= 1:5.44-2), libmagic1 (= 1:5.44-2), libmd0 (= 1.0.4-2), libminimap2-dev (= 2.24+dfsg-3), libmount1 (= 2.38.1-4ubuntu1), libmpc3 (= 1.3.1-1), libmpdec3 (= 2.5.1-2build2), libmpfr6 (= 4.2.0-1), libncursesw6 (= 6.4-2), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.51.0-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-2ubuntu1), libpam-modules (= 1.5.2-5ubuntu1), libpam-modules-bin (= 1.5.2-5ubuntu1), libpam-runtime (= 1.5.2-5ubuntu1), libpam0g (= 1.5.2-5ubuntu1), libpcre2-8-0 (= 10.42-1), libperl5.36 (= 5.36.0-7), libpipeline1 (= 1.5.7-1), libpkgconf3 (= 1.8.1-1ubuntu2), libpsl5 (= 0.21.0-1.2build2), libpython3-stdlib (= 3.11.1-0ubuntu1), libpython3.11-minimal (= 3.11.1-2), libpython3.11-stdlib (= 3.11.1-2), libquadmath0 (= 12.2.0-14ubuntu1), libreadline8 (= 8.2-1.3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg-10), libsasl2-modules-db (= 2.1.28+dfsg-10), libseccomp2 (= 2.5.4-1ubuntu2), libselinux1 (= 3.4-1build2), libslow5-0 (= 0.7.0+dfsg-2ubuntu1), libslow5-dev (= 0.7.0+dfsg-2ubuntu1), libsmartcols1 (= 2.38.1-4ubuntu1), libsqlite3-0 (= 3.40.1-1), libssh-4 (= 0.10.4-2), libssl-dev (= 3.0.7-1ubuntu1), libssl3 (= 3.0.7-1ubuntu1), libstdc++-12-dev (= 12.2.0-14ubuntu1), libstdc++6 (= 12.2.0-14ubuntu1), libstreamvbyte-dev (= 0.4.1-4ubuntu1), libstreamvbyte0 (= 0.4.1-4ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 252.4-1ubuntu1), libsz2 (= 1.0.6-1), libtasn1-6 (= 4.19.0-2), libtinfo6 (= 6.4-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-5), libtsan2 (= 12.2.0-14ubuntu1), libubsan1 (= 12.2.0-14ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 252.4-1ubuntu1), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-4ubuntu1), libxml2 (= 2.9.14+dfsg-1.1), libzstd1 (= 1.5.2+dfsg2-3), linux-libc-dev (= 5.19.0-23.24), login (= 1:4.13+dfsg1-1ubuntu1), lto-disabled-list (= 37), m4 (= 1.4.19-2), make (= 4.3-4.1build1), man-db (= 2.11.2-1), mawk (= 1.3.4.20200120-3.1), media-types (= 8.0.0), ncurses-base (= 6.4-2), ncurses-bin (= 6.4-2), patch (= 2.7.6-7build2), perl (= 5.36.0-7), perl-base (= 5.36.0-7), perl-modules-5.36 (= 5.36.0-7), pkg-config (= 1.8.1-1ubuntu2), pkgconf (= 1.8.1-1ubuntu2), pkgconf-bin (= 1.8.1-1ubuntu2), po-debconf (= 1.0.21+nmu1), python3 (= 3.11.1-0ubuntu1), python3-distutils (= 3.10.8-1), python3-lib2to3 (= 3.10.8-1), python3-minimal (= 3.11.1-0ubuntu1), python3.11 (= 3.11.1-2), python3.11-minimal (= 3.11.1-2), readline-common (= 8.2-1.3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.17+nmu1), sysvinit-utils (= 3.05-7ubuntu2), tar (= 1.34+dfsg-1.1), usrmerge (= 33ubuntu1), util-linux (= 2.38.1-4ubuntu1), util-linux-extra (= 2.38.1-4ubuntu1), xz-utils (= 5.4.1-0.0), zlib1g (= 1:1.2.13.dfsg-1ubuntu4), zlib1g-dev (= 1:1.2.13.dfsg-1ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1674664261" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ nanopolish_0.14.0-1ubuntu1_ppc64el.deb -------------------------------------- new Debian package, version 2.0. size 2408548 bytes: control archive=2084 bytes. 1036 bytes, 19 lines control 2320 bytes, 30 lines md5sums 309 bytes, 12 lines * postinst #!/bin/sh 384 bytes, 12 lines * prerm #!/bin/sh Package: nanopolish Version: 0.14.0-1ubuntu1 Architecture: ppc64el Maintainer: Ubuntu Developers Installed-Size: 9602 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.4.4), libgomp1 (>= 6), libhdf5-103-1, libhts3 (>= 1.10), libslow5-0 (>= 0.5.1), libstdc++6 (>= 11), libstreamvbyte0 (>= 0.4.1), zlib1g (>= 1:1.1.4), python3:any, perl:any Recommends: python3-biopython, python3-pysam Suggests: perl, make Section: science Priority: optional Homepage: https://github.com/jts/nanopolish Description: consensus caller for nanopore sequencing data Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2023-01-25 16:31 ./ drwxr-xr-x root/root 0 2023-01-25 16:31 ./usr/ drwxr-xr-x root/root 0 2023-01-25 16:31 ./usr/bin/ -rwxr-xr-x root/root 4000912 2023-01-25 16:31 ./usr/bin/nanopolish -rwxr-xr-x root/root 75 2022-07-02 09:08 ./usr/bin/nanopolish_makerange drwxr-xr-x root/root 0 2023-01-25 16:31 ./usr/lib/ drwxr-xr-x root/root 0 2023-01-25 16:31 ./usr/lib/nanopolish/ -rwxr-xr-x root/root 2913 2023-01-25 16:31 ./usr/lib/nanopolish/calculate_methylation_frequency.py -rwxr-xr-x root/root 599 2023-01-25 16:31 ./usr/lib/nanopolish/consensus-preprocess.pl -rwxr-xr-x root/root 1044 2023-01-25 16:31 ./usr/lib/nanopolish/consensus.make -rw-r--r-- root/root 923 2023-01-25 16:31 ./usr/lib/nanopolish/convert_all_models.py -rw-r--r-- root/root 2738 2023-01-25 16:31 ./usr/lib/nanopolish/convert_model_to_header.py -rw-r--r-- root/root 2090 2023-01-25 16:31 ./usr/lib/nanopolish/dropmodel.py -rwxr-xr-x root/root 13202 2023-01-25 16:31 ./usr/lib/nanopolish/extract_reads_aligned_to_region.py -rw-r--r-- root/root 2592 2023-01-25 16:31 ./usr/lib/nanopolish/import_ont_model.py -rwxr-xr-x root/root 286 2023-01-25 16:31 ./usr/lib/nanopolish/import_ont_models_from_dir.sh -rwxr-xr-x root/root 1188 2023-01-25 16:31 ./usr/lib/nanopolish/nanopolish_makerange.py -rw-r--r-- root/root 3136 2023-01-25 16:31 ./usr/lib/nanopolish/nanopolish_merge.py -rwxr-xr-x root/root 3869776 2023-01-25 16:31 ./usr/lib/nanopolish/nanopolish_test drwxr-xr-x root/root 0 2023-01-25 16:31 ./usr/lib/nanopolish/polya_training/ -rw-r--r-- root/root 4915 2023-01-25 16:31 ./usr/lib/nanopolish/polya_training/dump_signal.py -rw-r--r-- root/root 2248 2022-04-19 15:17 ./usr/lib/nanopolish/polya_training/environment.yml -rw-r--r-- root/root 4739 2023-01-25 16:31 ./usr/lib/nanopolish/polya_training/hmmplot.py -rw-r--r-- root/root 4071 2023-01-25 16:31 ./usr/lib/nanopolish/polya_training/retrain_emission.py -rw-r--r-- root/root 4029 2023-01-25 16:31 ./usr/lib/nanopolish/polya_training/workflow.md -rw-r--r-- root/root 13736 2023-01-25 16:31 ./usr/lib/nanopolish/reestimate_polya_emissions.py -rw-r--r-- root/root 184 2022-04-19 15:17 ./usr/lib/nanopolish/requirements.txt drwxr-xr-x root/root 0 2023-01-25 16:31 ./usr/share/ drwxr-xr-x root/root 0 2023-01-25 16:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-01-25 16:31 ./usr/share/doc/nanopolish/ -rw-r--r-- root/root 190 2022-07-02 09:08 ./usr/share/doc/nanopolish/README.Debian -rw-r--r-- root/root 3296 2022-04-19 15:17 ./usr/share/doc/nanopolish/README.md.gz -rw-r--r-- root/root 278 2022-07-02 09:08 ./usr/share/doc/nanopolish/README.test -rw-r--r-- root/root 1195 2023-01-25 16:31 ./usr/share/doc/nanopolish/changelog.Debian.gz -rw-r--r-- root/root 4071 2022-07-02 09:08 ./usr/share/doc/nanopolish/copyright drwxr-xr-x root/root 0 2023-01-25 16:31 ./usr/share/doc/nanopolish/examples/ drwxr-xr-x root/root 0 2022-04-19 15:17 ./usr/share/doc/nanopolish/examples/data/ -rw-r--r-- root/root 1850695 2022-04-19 15:17 ./usr/share/doc/nanopolish/examples/data/LomanLabz_PC_Ecoli_K12_R7.3_2549_1_ch8_file30_strand.fast5 -rw-r--r-- root/root 487 2022-07-02 09:08 ./usr/share/doc/nanopolish/run-unit-test drwxr-xr-x root/root 0 2023-01-25 16:31 ./usr/share/man/ drwxr-xr-x root/root 0 2023-01-25 16:31 ./usr/share/man/man1/ -rw-r--r-- root/root 451 2023-01-25 16:31 ./usr/share/man/man1/nanopolish.1.gz drwxr-xr-x root/root 0 2023-01-25 16:31 ./usr/share/python3/ drwxr-xr-x root/root 0 2023-01-25 16:31 ./usr/share/python3/runtime.d/ -rwxr-xr-x root/root 141 2023-01-25 16:31 ./usr/share/python3/runtime.d/nanopolish.rtupdate +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: 205332 Build-Time: 86 Distribution: lunar-proposed Host Architecture: ppc64el Install-Time: 11 Job: nanopolish_0.14.0-1ubuntu1.dsc Machine Architecture: ppc64el Package: nanopolish Package-Time: 98 Source-Version: 0.14.0-1ubuntu1 Space: 205332 Status: successful Version: 0.14.0-1ubuntu1 -------------------------------------------------------------------------------- Finished at 2023-01-26T17:34:00Z Build needed 00:01:38, 205332k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=ppc64el PACKAGEBUILD-25524223 Scanning for processes to kill in build PACKAGEBUILD-25524223