ncbi-blast+ 2.2.25-6 source package in Ubuntu


ncbi-blast+ (2.2.25-6) unstable; urgency=low

   * debian/control:
     Luca Capello <email address hidden>, fix reference for legacy_blast (Closes: #642986).
     + add a new line to separate the actual description from usage
      instruction in the long Description:.
   * debian/rules: add gene_info_reader binary in package

ncbi-blast+ (2.2.25-5) unstable; urgency=low

  * Team upload.
  * debian/patches/hurd_fixes: further patch configure(.ac) to reflect
    -Wl,rpath,... support.  (Closes: #629656.)
  * debian/patches/fix_lib_deps: link makembindex and srsearch against
    libxconnect rather than libconnect for consistency with libblast,
    which uses the former for consistency with other projects.

ncbi-blast+ (2.2.25-4) unstable; urgency=low

  [ Aaron M. Ucko ]
  * Team upload.
  * debian/patches/support_other_cpus: belatedly add a descriptive header.
  * debian/patches/hurd_fixes: new; fix hurd-specific issues.
    (In conjunction with the following change, finally closes: #629656.)
  * debian/control:
    - Build-Depends += libc0.3-dev (>= 2.13-9~) [hurd-i386] to avoid #630180.
    - Declare both binary packages as Multi-Arch: foreign.
  * debian/patches/fix_lib_deps: new; ensure that all libraries link against
    all direct dependencies.  (Break the dependency loop between libxblast
    and libxalgoblastdbindex by having the former provide only the C++ BLAST
    API, leaving the C core only in libblast.)  (Closes: #633567.)
  * debian/rules: tweak LDFLAGS, supplying -Wl,--as-needed across the
    board (as it is now safe to do so) and adding -Wl,--enable-new-dtags
    to allow LD_LIBRARY_PATH to override the private rpath.
  * debian/patches/no_multiarch_rpath: new; avoid redundant rpath entries
    on multiarch systems (courtesy of overzealous logic to ensure
    executables will be able to find libstdc++.)

  [ Andreas Tille ]
  * Enhances: t-coffee (as stated in tasks file)
 -- Julian Taylor <email address hidden>   Mon,  24 Oct 2011 09:43:19 +0000

Upload details

Uploaded by:
Julian Taylor on 2011-10-24
Uploaded to:
Original maintainer:
Debian Med
Low Urgency

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File Size SHA-256 Checksum
ncbi-blast+_2.2.25.orig.tar.gz 11.4 MiB b0c57e5ab1a69d74131a090182ea730cdbe23adeca241e466264789226b145a3
ncbi-blast+_2.2.25-6.debian.tar.gz 16.5 KiB d47af4e713ef0dfabf2f5e672eea2142d632e5753d6ee734c120f5b18bf61002
ncbi-blast+_2.2.25-6.dsc 2.2 KiB 053eea46b22f29c89dad7734ae4e94399f9e6cc19970959df7bc732e36964d7f

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Binary packages built by this source

ncbi-blast+: next generation suite of BLAST sequence search tools

 The Basic Local Alignment Search Tool (BLAST) is the most widely
 used sequence similarity tool. There are versions of BLAST that
 compare protein queries to protein databases, nucleotide queries
 to nucleotide databases, as well as versions that translate nucleotide
 queries or databases in all six frames and compare to protein databases
 or queries.
 PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting
 with a protein query, and then uses that PSSM to perform further searches.
 It is also possible to compare a protein or nucleotide query to a
 database of PSSM’s.
 The NCBI supports a BLAST web page at as well as
 a network service.

ncbi-blast+-legacy: NCBI Blast legacy call script

 This package adds some fake scripts to call NCBI+ programs
 with the NCBI blast command line. It makes use of the
 legacy_blast script in ncbi-blast+ package.
 To use those scripts, /usr/share/ncbi-blast+/bin must be added
 to the PATH.