RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-arm64-038 4.4.0-51-generic #72+buildd1-Ubuntu SMP Wed Nov 30 07:18:56 UTC 2016 aarch64 Buildd toolchain package versions: launchpad-buildd_140 python-lpbuildd_140 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1 dpkg-dev_1.18.4ubuntu1.1 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.6. Syncing the system clock with the buildd NTP service... 2 Dec 17:21:03 ntpdate[1724]: adjust time server 10.211.37.1 offset 0.015223 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-11407473', '/home/buildd/filecache-default/da5a7fe91cfeb8b88d00c8c12442026baa97f2d9'] Unpacking chroot for build PACKAGEBUILD-11407473 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-11407473'] Mounting chroot for build PACKAGEBUILD-11407473 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-11407473', 'deb http://ftpmaster.internal/ubuntu zesty main universe', 'deb http://ftpmaster.internal/ubuntu zesty-security main universe', 'deb http://ftpmaster.internal/ubuntu zesty-updates main universe', 'deb http://ftpmaster.internal/ubuntu zesty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-11407473 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-11407473', 'armhf'] Updating debian chroot for build PACKAGEBUILD-11407473 Get:1 http://ftpmaster.internal/ubuntu zesty InRelease [253 kB] Get:2 http://ftpmaster.internal/ubuntu zesty-security InRelease [102 kB] Get:3 http://ftpmaster.internal/ubuntu zesty-updates InRelease [102 kB] Get:4 http://ftpmaster.internal/ubuntu zesty-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main armhf Packages [1194 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main Translation-en [584 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/universe armhf Packages [7694 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/universe Translation-en [4597 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf Packages [81.8 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main Translation-en [42.0 kB] Get:11 http://ftpmaster.internal/ubuntu zesty-proposed/universe armhf Packages [471 kB] Get:12 http://ftpmaster.internal/ubuntu zesty-proposed/universe Translation-en [258 kB] Fetched 15.5 MB in 6s (2480 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.24 perl-modules-5.24 The following packages will be upgraded: adduser apt apt-transport-https base-files base-passwd bash binutils bsdutils ca-certificates cpp cpp-6 debianutils diffutils dmsetup findutils g++ g++-6 gcc gcc-6 gcc-6-base grep init init-system-helpers libapparmor1 libapt-pkg5.0 libasan3 libasn1-8-heimdal libassuan0 libatomic1 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcurl3-gnutls libdevmapper1.02.1 libfdisk1 libgcc-6-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libk5crypto3 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libksba8 libldap-2.4-2 liblzma5 libmount1 libnettle6 libnpth0 libpng16-16 libroken18-heimdal libsasl2-2 libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libssl1.0.0 libstdc++-6-dev libstdc++6 libsystemd0 libubsan0 libudev1 libustr-1.0-1 libuuid1 libwind0-heimdal linux-libc-dev mount multiarch-support openssl perl perl-base pinentry-curses pkg-create-dbgsym systemd systemd-sysv tar tzdata ubuntu-keyring util-linux xz-utils 96 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 47.9 MB of archives. After this operation, 32.6 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu zesty/main armhf base-files armhf 9.6ubuntu7 [56.6 kB] Get:2 http://ftpmaster.internal/ubuntu zesty/main armhf debianutils armhf 4.8.1 [84.3 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main armhf bash armhf 4.4-2ubuntu1 [527 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main armhf bsdutils armhf 1:2.29-1ubuntu2 [52.4 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main armhf diffutils armhf 1:3.5-1 [150 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main armhf findutils armhf 4.6.0+git+20161106-1 [268 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main armhf grep armhf 2.26-1 [141 kB] Get:8 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libc6-dev armhf 2.24-7ubuntu1 [1807 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libc-dev-bin armhf 2.24-7ubuntu1 [59.4 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf linux-libc-dev armhf 4.9.0-3.4 [841 kB] Get:11 http://ftpmaster.internal/ubuntu zesty/main armhf libgomp1 armhf 6.2.1-5ubuntu1 [67.6 kB] Get:12 http://ftpmaster.internal/ubuntu zesty/main armhf gcc-6-base armhf 6.2.1-5ubuntu1 [16.9 kB] Get:13 http://ftpmaster.internal/ubuntu zesty/main armhf libgcc1 armhf 1:6.2.1-5ubuntu1 [38.4 kB] Get:14 http://ftpmaster.internal/ubuntu zesty/main armhf libcc1-0 armhf 6.2.1-5ubuntu1 [25.9 kB] Get:15 http://ftpmaster.internal/ubuntu zesty/main armhf binutils armhf 2.27.51.20161201-1ubuntu1 [2394 kB] Get:16 http://ftpmaster.internal/ubuntu zesty/main armhf libatomic1 armhf 6.2.1-5ubuntu1 [6244 B] Get:17 http://ftpmaster.internal/ubuntu zesty/main armhf libasan3 armhf 6.2.1-5ubuntu1 [294 kB] Get:18 http://ftpmaster.internal/ubuntu zesty/main armhf libubsan0 armhf 6.2.1-5ubuntu1 [96.0 kB] Get:19 http://ftpmaster.internal/ubuntu zesty/main armhf g++-6 armhf 6.2.1-5ubuntu1 [5917 kB] Get:20 http://ftpmaster.internal/ubuntu zesty/main armhf libstdc++-6-dev armhf 6.2.1-5ubuntu1 [1496 kB] Get:21 http://ftpmaster.internal/ubuntu zesty/main armhf libgcc-6-dev armhf 6.2.1-5ubuntu1 [548 kB] Get:22 http://ftpmaster.internal/ubuntu zesty/main armhf gcc-6 armhf 6.2.1-5ubuntu1 [5749 kB] Get:23 http://ftpmaster.internal/ubuntu zesty/main armhf cpp-6 armhf 6.2.1-5ubuntu1 [5223 kB] Get:24 http://ftpmaster.internal/ubuntu zesty/main armhf libstdc++6 armhf 6.2.1-5ubuntu1 [356 kB] Get:25 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libc6 armhf 2.24-7ubuntu1 [2150 kB] Get:26 http://ftpmaster.internal/ubuntu zesty/main armhf libuuid1 armhf 2.29-1ubuntu2 [14.4 kB] Get:27 http://ftpmaster.internal/ubuntu zesty/main armhf libblkid1 armhf 2.29-1ubuntu2 [98.1 kB] Get:28 http://ftpmaster.internal/ubuntu zesty/main armhf libfdisk1 armhf 2.29-1ubuntu2 [132 kB] Get:29 http://ftpmaster.internal/ubuntu zesty/main armhf libselinux1 armhf 2.6-3 [59.6 kB] Get:30 http://ftpmaster.internal/ubuntu zesty/main armhf util-linux armhf 2.29-1ubuntu2 [843 kB] Get:31 http://ftpmaster.internal/ubuntu zesty/main armhf mount armhf 2.29-1ubuntu2 [125 kB] Get:32 http://ftpmaster.internal/ubuntu zesty/main armhf perl-modules-5.24 all 5.24.1~rc4-1 [2663 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main armhf libperl5.24 armhf 5.24.1~rc4-1 [2804 kB] Get:34 http://ftpmaster.internal/ubuntu zesty/main armhf perl armhf 5.24.1~rc4-1 [219 kB] Get:35 http://ftpmaster.internal/ubuntu zesty/main armhf perl-base armhf 5.24.1~rc4-1 [1218 kB] Get:36 http://ftpmaster.internal/ubuntu zesty/main armhf tar armhf 1.29b-1.1 [194 kB] Get:37 http://ftpmaster.internal/ubuntu zesty/main armhf base-passwd armhf 3.5.41 [47.3 kB] Get:38 http://ftpmaster.internal/ubuntu zesty/main armhf init-system-helpers all 1.46 [37.3 kB] Get:39 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libc-bin armhf 2.24-7ubuntu1 [489 kB] Get:40 http://ftpmaster.internal/ubuntu zesty/main armhf liblzma5 armhf 5.2.2-1.2 [83.2 kB] Get:41 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libapt-pkg5.0 armhf 1.4~beta1 [713 kB] Get:42 http://ftpmaster.internal/ubuntu zesty/main armhf adduser all 3.113+nmu3ubuntu5 [161 kB] Get:43 http://ftpmaster.internal/ubuntu zesty/main armhf ubuntu-keyring all 2016.10.27 [16.6 kB] Get:44 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf apt armhf 1.4~beta1 [1037 kB] Get:45 http://ftpmaster.internal/ubuntu zesty/main armhf libapparmor1 armhf 2.10.95-4ubuntu5.2 [26.3 kB] Get:46 http://ftpmaster.internal/ubuntu zesty/main armhf libgpg-error0 armhf 1.25-1 [30.2 kB] Get:47 http://ftpmaster.internal/ubuntu zesty/main armhf libgcrypt20 armhf 1.7.3-2 [342 kB] Get:48 http://ftpmaster.internal/ubuntu zesty/main armhf libmount1 armhf 2.29-1ubuntu2 [106 kB] Get:49 http://ftpmaster.internal/ubuntu zesty/main armhf systemd armhf 232-7 [2173 kB] Get:50 http://ftpmaster.internal/ubuntu zesty/main armhf libsystemd0 armhf 232-7 [190 kB] Get:51 http://ftpmaster.internal/ubuntu zesty/main armhf init armhf 1.46 [5318 B] Get:52 http://ftpmaster.internal/ubuntu zesty/main armhf systemd-sysv armhf 232-7 [13.9 kB] Get:53 http://ftpmaster.internal/ubuntu zesty/main armhf libsepol1 armhf 2.6-1 [191 kB] Get:54 http://ftpmaster.internal/ubuntu zesty/main armhf libustr-1.0-1 armhf 1.0.4-6 [48.0 kB] Get:55 http://ftpmaster.internal/ubuntu zesty/main armhf libsemanage-common all 2.6-1 [6832 B] Get:56 http://ftpmaster.internal/ubuntu zesty/main armhf libsemanage1 armhf 2.6-1 [71.3 kB] Get:57 http://ftpmaster.internal/ubuntu zesty/main armhf libsmartcols1 armhf 2.29-1ubuntu2 [60.4 kB] Get:58 http://ftpmaster.internal/ubuntu zesty/main armhf libudev1 armhf 232-7 [51.9 kB] Get:59 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf multiarch-support armhf 2.24-7ubuntu1 [6824 B] Get:60 http://ftpmaster.internal/ubuntu zesty/main armhf tzdata all 2016j-2 [204 kB] Get:61 http://ftpmaster.internal/ubuntu zesty/main armhf libdevmapper1.02.1 armhf 2:1.02.136-1ubuntu1 [126 kB] Get:62 http://ftpmaster.internal/ubuntu zesty/main armhf dmsetup armhf 2:1.02.136-1ubuntu1 [71.2 kB] Get:63 http://ftpmaster.internal/ubuntu zesty/main armhf libroken18-heimdal armhf 1.7~git20160703+dfsg-1ubuntu1 [33.8 kB] Get:64 http://ftpmaster.internal/ubuntu zesty/main armhf libasn1-8-heimdal armhf 1.7~git20160703+dfsg-1ubuntu1 [138 kB] Get:65 http://ftpmaster.internal/ubuntu zesty/main armhf libassuan0 armhf 2.4.3-2 [28.2 kB] Get:66 http://ftpmaster.internal/ubuntu zesty/main armhf libhogweed4 armhf 3.3-1 [126 kB] Get:67 http://ftpmaster.internal/ubuntu zesty/main armhf libnettle6 armhf 3.3-1 [112 kB] Get:68 http://ftpmaster.internal/ubuntu zesty/main armhf libgnutls30 armhf 3.5.6-4ubuntu2 [570 kB] Get:69 http://ftpmaster.internal/ubuntu zesty/main armhf libheimbase1-heimdal armhf 1.7~git20160703+dfsg-1ubuntu1 [24.1 kB] Get:70 http://ftpmaster.internal/ubuntu zesty/main armhf libhcrypto4-heimdal armhf 1.7~git20160703+dfsg-1ubuntu1 [77.2 kB] Get:71 http://ftpmaster.internal/ubuntu zesty/main armhf libwind0-heimdal armhf 1.7~git20160703+dfsg-1ubuntu1 [47.0 kB] Get:72 http://ftpmaster.internal/ubuntu zesty/main armhf libhx509-5-heimdal armhf 1.7~git20160703+dfsg-1ubuntu1 [88.3 kB] Get:73 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libsqlite3-0 armhf 3.15.2-1 [411 kB] Get:74 http://ftpmaster.internal/ubuntu zesty/main armhf libkrb5-26-heimdal armhf 1.7~git20160703+dfsg-1ubuntu1 [165 kB] Get:75 http://ftpmaster.internal/ubuntu zesty/main armhf libheimntlm0-heimdal armhf 1.7~git20160703+dfsg-1ubuntu1 [13.3 kB] Get:76 http://ftpmaster.internal/ubuntu zesty/main armhf libgssapi3-heimdal armhf 1.7~git20160703+dfsg-1ubuntu1 [79.3 kB] Get:77 http://ftpmaster.internal/ubuntu zesty/main armhf libksba8 armhf 1.3.5-2 [78.7 kB] Get:78 http://ftpmaster.internal/ubuntu zesty/main armhf libsasl2-modules-db armhf 2.1.27~72-g88d82a3+dfsg-1 [13.5 kB] Get:79 http://ftpmaster.internal/ubuntu zesty/main armhf libsasl2-2 armhf 2.1.27~72-g88d82a3+dfsg-1 [42.2 kB] Get:80 http://ftpmaster.internal/ubuntu zesty/main armhf libldap-2.4-2 armhf 2.4.42+dfsg-2ubuntu5 [139 kB] Get:81 http://ftpmaster.internal/ubuntu zesty/main armhf libnpth0 armhf 1.3-1 [7020 B] Get:82 http://ftpmaster.internal/ubuntu zesty/main armhf libslang2 armhf 2.3.1-5ubuntu1 [381 kB] Get:83 http://ftpmaster.internal/ubuntu zesty/main armhf libssl1.0.0 armhf 1.0.2g-1ubuntu10 [711 kB] Get:84 http://ftpmaster.internal/ubuntu zesty/main armhf pinentry-curses armhf 0.9.7-9 [27.5 kB] Get:85 http://ftpmaster.internal/ubuntu zesty/main armhf xz-utils armhf 5.2.2-1.2 [80.0 kB] Get:86 http://ftpmaster.internal/ubuntu zesty/main armhf libgssapi-krb5-2 armhf 1.15~beta1-1 [98.4 kB] Get:87 http://ftpmaster.internal/ubuntu zesty/main armhf libkrb5-3 armhf 1.15~beta1-1 [230 kB] Get:88 http://ftpmaster.internal/ubuntu zesty/main armhf libkrb5support0 armhf 1.15~beta1-1 [28.1 kB] Get:89 http://ftpmaster.internal/ubuntu zesty/main armhf libk5crypto3 armhf 1.15~beta1-1 [82.5 kB] Get:90 http://ftpmaster.internal/ubuntu zesty/main armhf libcurl3-gnutls armhf 7.51.0-1ubuntu1 [163 kB] Get:91 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf apt-transport-https armhf 1.4~beta1 [30.5 kB] Get:92 http://ftpmaster.internal/ubuntu zesty/main armhf openssl armhf 1.0.2g-1ubuntu10 [484 kB] Get:93 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf ca-certificates all 20161102 [194 kB] Get:94 http://ftpmaster.internal/ubuntu zesty/main armhf libpng16-16 armhf 1.6.26-2ubuntu1 [158 kB] Get:95 http://ftpmaster.internal/ubuntu zesty/main armhf cpp armhf 4:6.2.1-1ubuntu1 [27.4 kB] Get:96 http://ftpmaster.internal/ubuntu zesty/main armhf gcc armhf 4:6.2.1-1ubuntu1 [5186 B] Get:97 http://ftpmaster.internal/ubuntu zesty/main armhf g++ armhf 4:6.2.1-1ubuntu1 [1482 B] Get:98 http://ftpmaster.internal/ubuntu zesty/main armhf pkg-create-dbgsym all 0.73 [8952 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 47.9 MB in 4s (10.5 MB/s) (Reading database ... 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Installing new version of config file /etc/systemd/system.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13851 files and directories currently installed.) Preparing to unpack .../0-systemd-sysv_232-7_armhf.deb ... Unpacking systemd-sysv (232-7) over (231-9git1) ... Preparing to unpack .../1-libsepol1_2.6-1_armhf.deb ... Unpacking libsepol1:armhf (2.6-1) over (2.5-1) ... 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Setting up libcc1-0:armhf (6.2.1-5ubuntu1) ... Setting up libasan3:armhf (6.2.1-5ubuntu1) ... Setting up libssl1.0.0:armhf (1.0.2g-1ubuntu10) ... Setting up libpng16-16:armhf (1.6.26-2ubuntu1) ... Setting up tzdata (2016j-2) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Dec 2 17:22:12 UTC 2016. Universal Time is now: Fri Dec 2 17:22:12 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (232-7) ... Setting up libubsan0:armhf (6.2.1-5ubuntu1) ... Setting up libsasl2-modules-db:armhf (2.1.27~72-g88d82a3+dfsg-1) ... Setting up linux-libc-dev:armhf (4.9.0-3.4) ... Setting up libsasl2-2:armhf (2.1.27~72-g88d82a3+dfsg-1) ... Setting up libroken18-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libksba8:armhf (1.3.5-2) ... Setting up libdevmapper1.02.1:armhf (2:1.02.136-1ubuntu1) ... Setting up libkrb5support0:armhf (1.15~beta1-1) ... Setting up libhogweed4:armhf (3.3-1) ... Setting up perl (5.24.1~rc4-1) ... Installing new version of config file /etc/perl/sitecustomize.pl ... Processing triggers for libc-bin (2.24-7ubuntu1) ... Setting up pkg-create-dbgsym (0.73) ... Setting up xz-utils (5.2.2-1.2) ... Setting up libheimbase1-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) ... Setting up openssl (1.0.2g-1ubuntu10) ... Setting up libsqlite3-0:armhf (3.15.2-1) ... Setting up dmsetup (2:1.02.136-1ubuntu1) ... Setting up binutils (2.27.51.20161201-1ubuntu1) ... Setting up cpp-6 (6.2.1-5ubuntu1) ... Setting up libc-dev-bin (2.24-7ubuntu1) ... Setting up ca-certificates (20161102) ... Updating certificates in /etc/ssl/certs... 10 added, 10 removed; done. Setting up libc6-dev:armhf (2.24-7ubuntu1) ... Setting up libslang2:armhf (2.3.1-5ubuntu1) ... Setting up libassuan0:armhf (2.4.3-2) ... Setting up cpp (4:6.2.1-1ubuntu1) ... Setting up libk5crypto3:armhf (1.15~beta1-1) ... Setting up libgcc-6-dev:armhf (6.2.1-5ubuntu1) ... Setting up libstdc++-6-dev:armhf (6.2.1-5ubuntu1) ... Setting up libwind0-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) ... Setting up init (1.46) ... Setting up libasn1-8-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libhcrypto4-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libgnutls30:armhf (3.5.6-4ubuntu2) ... Setting up libhx509-5-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) ... Setting up gcc-6 (6.2.1-5ubuntu1) ... Setting up g++-6 (6.2.1-5ubuntu1) ... Setting up pinentry-curses (0.9.7-9) ... Setting up libkrb5-3:armhf (1.15~beta1-1) ... Setting up libkrb5-26-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libheimntlm0-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) ... Setting up gcc (4:6.2.1-1ubuntu1) ... Setting up libgssapi-krb5-2:armhf (1.15~beta1-1) ... Setting up g++ (4:6.2.1-1ubuntu1) ... Setting up libgssapi3-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libldap-2.4-2:armhf (2.4.42+dfsg-2ubuntu5) ... Setting up libcurl3-gnutls:armhf (7.51.0-1ubuntu1) ... Setting up apt-transport-https (1.4~beta1) ... Processing triggers for libc-bin (2.24-7ubuntu1) ... Processing triggers for ca-certificates (20161102) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-11407473', 'armhf', 'zesty-proposed', '-c', 'chroot:autobuild', '--arch=armhf', '--dist=zesty-proposed', '--purge=never', '--nolog', 'ncbi-blast+_2.5.0-1.dsc'] Initiating build PACKAGEBUILD-11407473 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-51-generic #72+buildd1-Ubuntu SMP Wed Nov 30 07:18:56 UTC 2016 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-arm64-038.buildd +==============================================================================+ | ncbi-blast+ 2.5.0-1 (armhf) 02 Dec 2016 17:22 | +==============================================================================+ Package: ncbi-blast+ Version: 2.5.0-1 Source Version: 2.5.0-1 Distribution: zesty-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0' with '<>' I: NOTICE: Log filtering will replace 'build/ncbi-blast+-kcARvj' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-11407473/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ncbi-blast+_2.5.0-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/build/ncbi-blast+-kcARvj/resolver-7ET5q0/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/build/ncbi-blast+-kcARvj/resolver-7ET5q0/apt_archive ./ InRelease Get:2 copy:/build/ncbi-blast+-kcARvj/resolver-7ET5q0/apt_archive ./ Release [2119 B] Ign:3 copy:/build/ncbi-blast+-kcARvj/resolver-7ET5q0/apt_archive ./ Release.gpg Get:4 copy:/build/ncbi-blast+-kcARvj/resolver-7ET5q0/apt_archive ./ Sources [214 B] Get:5 copy:/build/ncbi-blast+-kcARvj/resolver-7ET5q0/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (66.6 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 768 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/build/ncbi-blast+-kcARvj/resolver-7ET5q0/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 768 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 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Merged Build-Depends: autotools-dev, debhelper (>= 9), libboost-test-dev, libbz2-dev, libc-dev-bin, libpcre3-dev, time, zlib1g-dev Filtered Build-Depends: autotools-dev, debhelper (>= 9), libboost-test-dev, libbz2-dev, libc-dev-bin, libpcre3-dev, time, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-ncbi-blast+-dummy' in '/build/ncbi-blast+-kcARvj/resolver-9IsLql/apt_archive/sbuild-build-depends-ncbi-blast+-dummy.deb'. Ign:1 copy:/build/ncbi-blast+-kcARvj/resolver-9IsLql/apt_archive ./ InRelease Get:2 copy:/build/ncbi-blast+-kcARvj/resolver-9IsLql/apt_archive ./ Release [2119 B] Ign:3 copy:/build/ncbi-blast+-kcARvj/resolver-9IsLql/apt_archive ./ Release.gpg Get:4 copy:/build/ncbi-blast+-kcARvj/resolver-9IsLql/apt_archive ./ Sources [258 B] Get:5 copy:/build/ncbi-blast+-kcARvj/resolver-9IsLql/apt_archive ./ Packages [574 B] Fetched 2951 B in 0s (53.7 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install ncbi-blast+ build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libboost-test-dev libboost-test1.62-dev libboost-test1.62.0 libboost1.62-dev libbsd0 libbz2-dev libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc libmagic1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf time zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.62-doc libboost-atomic1.62-dev libboost-chrono1.62-dev libboost-context1.62-dev libboost-coroutine1.62-dev libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev libboost-filesystem1.62-dev libboost-graph1.62-dev libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev libboost-program-options1.62-dev libboost-python1.62-dev libboost-random1.62-dev libboost-regex1.62-dev libboost-serialization1.62-dev libboost-signals1.62-dev libboost-system1.62-dev libboost-thread1.62-dev libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev libmpfrc++-dev libntl-dev libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur bzip2-doc libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libboost-test-dev libboost-test1.62-dev libboost-test1.62.0 libboost1.62-dev libbsd0 libbz2-dev libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc libmagic1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf sbuild-build-depends-ncbi-blast+-dummy time zlib1g-dev 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 24.0 MB of archives. After this operation, 183 MB of additional disk space will be used. Get:1 copy:/build/ncbi-blast+-kcARvj/resolver-9IsLql/apt_archive ./ sbuild-build-depends-ncbi-blast+-dummy 0.invalid.0 [822 B] Get:2 http://ftpmaster.internal/ubuntu zesty/main armhf groff-base armhf 1.22.3-8 [1013 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main armhf libbsd0 armhf 0.8.3-1 [48.3 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main armhf bsdmainutils armhf 9.0.12ubuntu1 [169 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main armhf libpipeline1 armhf 1.4.1-2 [21.0 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main armhf man-db armhf 2.7.5-2 [835 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main armhf libpcrecpp0v5 armhf 2:8.39-2 [13.2 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/main armhf libunistring0 armhf 0.9.3-5.2ubuntu1 [250 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libmagic-mgc armhf 1:5.29-1 [178 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libmagic1 armhf 1:5.29-1 [62.8 kB] Get:11 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf file armhf 1:5.29-1 [21.5 kB] Get:12 http://ftpmaster.internal/ubuntu zesty/main armhf gettext-base armhf 0.19.8.1-1ubuntu2 [45.0 kB] Get:13 http://ftpmaster.internal/ubuntu zesty/main armhf libglib2.0-0 armhf 2.51.0-2 [999 kB] Get:14 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libicu57 armhf 57.1-5 [7423 kB] Get:15 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libxml2 armhf 2.9.4+dfsg1-2.1 [604 kB] Get:16 http://ftpmaster.internal/ubuntu zesty/main armhf time armhf 1.7-25.1 [25.9 kB] Get:17 http://ftpmaster.internal/ubuntu zesty/main armhf libsigsegv2 armhf 2.10-5 [13.3 kB] Get:18 http://ftpmaster.internal/ubuntu zesty/main armhf m4 armhf 1.4.17-5 [179 kB] Get:19 http://ftpmaster.internal/ubuntu zesty/main armhf autoconf all 2.69-10 [321 kB] Get:20 http://ftpmaster.internal/ubuntu zesty/main armhf autotools-dev all 20161112.1 [39.5 kB] Get:21 http://ftpmaster.internal/ubuntu zesty/main armhf automake all 1:1.15-5ubuntu1 [509 kB] Get:22 http://ftpmaster.internal/ubuntu zesty/main armhf autopoint all 0.19.8.1-1ubuntu2 [412 kB] Get:23 http://ftpmaster.internal/ubuntu zesty/main armhf libtool all 2.4.6-2 [194 kB] Get:24 http://ftpmaster.internal/ubuntu zesty/main armhf dh-autoreconf all 12 [15.8 kB] Get:25 http://ftpmaster.internal/ubuntu zesty/main armhf libarchive-zip-perl all 1.59-1 [84.0 kB] Get:26 http://ftpmaster.internal/ubuntu zesty/main armhf libfile-stripnondeterminism-perl all 0.028-1 [12.5 kB] Get:27 http://ftpmaster.internal/ubuntu zesty/main armhf libtimedate-perl all 2.3000-2 [37.5 kB] Get:28 http://ftpmaster.internal/ubuntu zesty/main armhf dh-strip-nondeterminism all 0.028-1 [4820 B] Get:29 http://ftpmaster.internal/ubuntu zesty/main armhf libcroco3 armhf 0.6.11-2 [69.6 kB] Get:30 http://ftpmaster.internal/ubuntu zesty/main armhf gettext armhf 0.19.8.1-1ubuntu2 [1016 kB] Get:31 http://ftpmaster.internal/ubuntu zesty/main armhf intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:32 http://ftpmaster.internal/ubuntu zesty/main armhf po-debconf all 1.0.20 [232 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main armhf debhelper all 10.2.2ubuntu1 [742 kB] Get:34 http://ftpmaster.internal/ubuntu zesty/main armhf libboost1.62-dev armhf 1.62.0+dfsg-4 [6986 kB] Get:35 http://ftpmaster.internal/ubuntu zesty/universe armhf libboost-test1.62.0 armhf 1.62.0+dfsg-4 [208 kB] Get:36 http://ftpmaster.internal/ubuntu zesty/universe armhf libboost-test1.62-dev armhf 1.62.0+dfsg-4 [277 kB] Get:37 http://ftpmaster.internal/ubuntu zesty/universe armhf libboost-test-dev armhf 1.62.0.1 [2902 B] Get:38 http://ftpmaster.internal/ubuntu zesty/main armhf libbz2-dev armhf 1.0.6-8build1 [27.3 kB] Get:39 http://ftpmaster.internal/ubuntu zesty/main armhf libpcre16-3 armhf 2:8.39-2 [129 kB] Get:40 http://ftpmaster.internal/ubuntu zesty/main armhf libpcre32-3 armhf 2:8.39-2 [122 kB] Get:41 http://ftpmaster.internal/ubuntu zesty/main armhf libpcre3-dev armhf 2:8.39-2 [474 kB] Get:42 http://ftpmaster.internal/ubuntu zesty/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2ubuntu5 [161 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 24.0 MB in 2s (11.6 MB/s) Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13861 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-8_armhf.deb ... Unpacking groff-base (1.22.3-8) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../01-libbsd0_0.8.3-1_armhf.deb ... Unpacking libbsd0:armhf (0.8.3-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_9.0.12ubuntu1_armhf.deb ... 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Setting up groff-base (1.22.3-8) ... Setting up libglib2.0-0:armhf (2.51.0-2) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-1ubuntu2) ... Setting up libpipeline1:armhf (1.4.1-2) ... Setting up m4 (1.4.17-5) ... Setting up libicu57:armhf (57.1-5) ... Setting up libbsd0:armhf (0.8.3-1) ... Setting up libxml2:armhf (2.9.4+dfsg1-2.1) ... Setting up libmagic-mgc (1:5.29-1) ... Setting up libmagic1:armhf (1:5.29-1) ... Setting up libcroco3:armhf (0.6.11-2) ... Processing triggers for libc-bin (2.24-7ubuntu1) ... Setting up autotools-dev (20161112.1) ... Setting up libunistring0:armhf (0.9.3-5.2ubuntu1) ... Setting up libboost-test1.62.0:armhf (1.62.0+dfsg-4) ... Setting up libpcrecpp0v5:armhf (2:8.39-2) ... Setting up libpcre32-3:armhf (2:8.39-2) ... Setting up libpcre16-3:armhf (2:8.39-2) ... Setting up bsdmainutils (9.0.12ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-1ubuntu2) ... Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2ubuntu5) ... Setting up libfile-stripnondeterminism-perl (0.028-1) ... Setting up libpcre3-dev:armhf (2:8.39-2) ... Setting up gettext (0.19.8.1-1ubuntu2) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.29-1) ... Setting up libboost-test1.62-dev:armhf (1.62.0+dfsg-4) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15-5ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-test-dev:armhf (1.62.0.1) ... Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (12) ... Setting up dh-strip-nondeterminism (0.028-1) ... Setting up debhelper (10.2.2ubuntu1) ... Setting up sbuild-build-depends-ncbi-blast+-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-7ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-51-generic arm64 (armv7l) Toolchain package versions: binutils_2.27.51.20161201-1ubuntu1 dpkg-dev_1.18.10ubuntu1 g++-6_6.2.1-5ubuntu1 gcc-6_6.2.1-5ubuntu1 libc6-dev_2.24-7ubuntu1 libstdc++-6-dev_6.2.1-5ubuntu1 libstdc++6_6.2.1-5ubuntu1 linux-libc-dev_4.9.0-3.4 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_1.20-1 apt_1.4~beta1 apt-transport-https_1.4~beta1 autoconf_2.69-10 automake_1:1.15-5ubuntu1 autopoint_0.19.8.1-1ubuntu2 autotools-dev_20161112.1 base-files_9.6ubuntu7 base-passwd_3.5.41 bash_4.4-2ubuntu1 binutils_2.27.51.20161201-1ubuntu1 bsdmainutils_9.0.12ubuntu1 bsdutils_1:2.29-1ubuntu2 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20161102 coreutils_8.25-2ubuntu2 cpp_4:6.2.1-1ubuntu1 cpp-6_6.2.1-5ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.59ubuntu1 debhelper_10.2.2ubuntu1 debianutils_4.8.1 dh-autoreconf_12 dh-strip-nondeterminism_0.028-1 diffutils_1:3.5-1 dmsetup_2:1.02.136-1ubuntu1 dpkg_1.18.10ubuntu1 dpkg-dev_1.18.10ubuntu1 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-1ubuntu2 file_1:5.29-1 findutils_4.6.0+git+20161106-1 g++_4:6.2.1-1ubuntu1 g++-6_6.2.1-5ubuntu1 gcc_4:6.2.1-1ubuntu1 gcc-6_6.2.1-5ubuntu1 gcc-6-base_6.2.1-5ubuntu1 gettext_0.19.8.1-1ubuntu2 gettext-base_0.19.8.1-1ubuntu2 gnupg_2.1.15-1ubuntu6 gnupg-agent_2.1.15-1ubuntu6 gpgv_2.1.15-1ubuntu6 grep_2.26-1 groff-base_1.22.3-8 gzip_1.6-4ubuntu1 hostname_3.18 init_1.46 init-system-helpers_1.46 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-4ubuntu5.2 libapt-pkg5.0_1.4~beta1 libarchive-zip-perl_1.59-1 libasan3_6.2.1-5ubuntu1 libasn1-8-heimdal_1.7~git20160703+dfsg-1ubuntu1 libassuan0_2.4.3-2 libatomic1_6.2.1-5ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.6-1ubuntu1 libaudit1_1:2.6.6-1ubuntu1 libblkid1_2.29-1ubuntu2 libboost-test-dev_1.62.0.1 libboost-test1.62-dev_1.62.0+dfsg-4 libboost-test1.62.0_1.62.0+dfsg-4 libboost1.62-dev_1.62.0+dfsg-4 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8build1 libbz2-dev_1.0.6-8build1 libc-bin_2.24-7ubuntu1 libc-dev-bin_2.24-7ubuntu1 libc6_2.24-7ubuntu1 libc6-dev_2.24-7ubuntu1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_6.2.1-5ubuntu1 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.51.0-1ubuntu1 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.136-1ubuntu1 libdpkg-perl_1.18.10ubuntu1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.29-1ubuntu2 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.028-1 libgcc-6-dev_6.2.1-5ubuntu1 libgcc1_1:6.2.1-5ubuntu1 libgcrypt20_1.7.3-2 libgdbm3_1.8.3-14 libglib2.0-0_2.51.0-2 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.5.6-4ubuntu2 libgomp1_6.2.1-5ubuntu1 libgpg-error0_1.25-1 libgssapi-krb5-2_1.15~beta1-1 libgssapi3-heimdal_1.7~git20160703+dfsg-1ubuntu1 libhcrypto4-heimdal_1.7~git20160703+dfsg-1ubuntu1 libheimbase1-heimdal_1.7~git20160703+dfsg-1ubuntu1 libheimntlm0-heimdal_1.7~git20160703+dfsg-1ubuntu1 libhogweed4_3.3-1 libhx509-5-heimdal_1.7~git20160703+dfsg-1ubuntu1 libicu57_57.1-5 libidn11_1.33-1 libip4tc0_1.6.0-3ubuntu2 libisl15_0.17.1-1 libk5crypto3_1.15~beta1-1 libkeyutils1_1.5.9-9ubuntu1 libkmod2_22-1.1ubuntu1 libkrb5-26-heimdal_1.7~git20160703+dfsg-1ubuntu1 libkrb5-3_1.15~beta1-1 libkrb5support0_1.15~beta1-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.42+dfsg-2ubuntu5 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.29-1 libmagic1_1:5.29-1 libmount1_2.29-1ubuntu2 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-1 libnpth0_1.3-1 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre16-3_2:8.39-2 libpcre3_2:8.39-2 libpcre3-dev_2:8.39-2 libpcre32-3_2:8.39-2 libpcrecpp0v5_2:8.39-2 libperl5.22_5.22.2-3 libperl5.24_5.24.1~rc4-1 libpipeline1_1.4.1-2 libpng16-16_1.6.26-2ubuntu1 libprocps6_2:3.3.12-1ubuntu2 libreadline7_7.0-0ubuntu2 libroken18-heimdal_1.7~git20160703+dfsg-1ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~72-g88d82a3+dfsg-1 libsasl2-modules-db_2.1.27~72-g88d82a3+dfsg-1 libseccomp2_2.3.1-2ubuntu2 libselinux1_2.6-3 libsemanage-common_2.6-1 libsemanage1_2.6-1 libsepol1_2.6-1 libsigsegv2_2.10-5 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.29-1ubuntu2 libsqlite3-0_3.15.2-1 libss2_1.43.3-1 libssl1.0.0_1.0.2g-1ubuntu10 libstdc++-6-dev_6.2.1-5ubuntu1 libstdc++6_6.2.1-5ubuntu1 libsystemd0_232-7 libtasn1-6_4.9-4 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libubsan0_6.2.1-5ubuntu1 libudev1_232-7 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1ubuntu2 libwind0-heimdal_1.7~git20160703+dfsg-1ubuntu1 libxml2_2.9.4+dfsg1-2.1 linux-libc-dev_4.9.0-3.4 lockfile-progs_0.1.17 login_1:4.2-3.2ubuntu1 lsb-base_9.20160110ubuntu5 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-2 mawk_1.3.3-17ubuntu2 mount_2.29-1ubuntu2 multiarch-support_2.24-7ubuntu1 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu10 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu1 patch_2.7.5-1 perl_5.24.1~rc4-1 perl-base_5.24.1~rc4-1 perl-modules-5.22_5.22.2-3 perl-modules-5.24_5.24.1~rc4-1 pinentry-curses_0.9.7-9 pkg-create-dbgsym_0.73 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ncbi-blast+-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 systemd_232-7 systemd-sysv_232-7 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1.1 time_1.7-25.1 tzdata_2016j-2 ubuntu-keyring_2016.10.27 util-linux_2.29-1ubuntu2 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-2ubuntu5 zlib1g-dev_1:1.2.8.dfsg-2ubuntu5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Dec 2 08:54:13 2016 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ncbi-blast+_2.5.0-1.dsc dpkg-source: info: extracting ncbi-blast+ in ncbi-blast+-2.5.0 dpkg-source: info: unpacking ncbi-blast+_2.5.0.orig.tar.gz dpkg-source: info: unpacking ncbi-blast+_2.5.0-1.debian.tar.xz dpkg-source: info: applying enable_clean_after_failed_compile dpkg-source: info: applying hurd_fixes dpkg-source: info: applying legacy_rename_rpsblast dpkg-source: info: applying fix_lib_deps dpkg-source: info: applying no_multiarch_rpath dpkg-source: info: applying use_pie_for_apps dpkg-source: info: applying skip_services_unit_test dpkg-source: info: applying fix_configure dpkg-source: info: applying support_x32 Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0 SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package ncbi-blast+ dpkg-buildpackage: info: source version 2.5.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build ncbi-blast+-2.5.0 dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean -Dc++ --with autotools_dev dh_testdir -O-Dc\+\+ dh_auto_clean -O-Dc\+\+ dh_autotools-dev_restoreconfig -O-Dc\+\+ debian/rules override_dh_clean make[1]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0' cp c++/configure.orig configure.orig.save dh_clean #Tricky - for each module directory there may be several module files #or there may be none but then there is still a module named after the #directory. Clean everything! for x in c++/src/objects/* ; do \ (cd "$x" && ( \ mods="`echo *.module`" ; \ [ "${mods#*\*}" = "$mods" ] || mods="`basename $x`" ; \ for mod in $mods ; do \ ../../../BUILD/build/new_module.sh $mod purge_sources ; \ done ) ; \ ) ; \ done /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found debian/rules:94: recipe for target 'override_dh_clean' failed make[1]: [override_dh_clean] Error 127 (ignored) rm -rf c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module find -name check_exec.pid -delete rm -rf c++/BUILD mv configure.orig.save c++/configure.orig make[1]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0' debian/rules build-arch dh build-arch -Dc++ --with autotools_dev dh_testdir -a -O-Dc\+\+ dh_update_autotools_config -a -O-Dc\+\+ dh_autotools-dev_updateconfig -a -O-Dc\+\+ debian/rules override_dh_auto_configure make[1]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0' cd c++ && LD_LIBRARY_PATH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib${LD_LIBRARY_PATH+:$LD_LIBRARY_PATH} \ CONFIG_SHELL=/bin/bash ./configure --with-dll --with-mt --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --with-runpath=/usr/lib/ncbi-blast+ --with-build-root=BUILD --without-debug --without-downloaded-vdb --with-symbols CFLAGS_FOR_BUILD="-g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE" LDFLAGS_FOR_BUILD="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed" configure: loading site script ./src/build-system/config.site configure: creating cache config.cache checking TeamCity build number... none checking Subversion revision... unknown checking NCBI stable components' version... unknown checking build system type... armv7l-unknown-linux-gnueabihf checking host system type... armv7l-unknown-linux-gnueabihf checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for gcc... gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes adjusted C compiler: /usr/bin/gcc adjusted C++ compiler: /usr/bin/g++ checking whether /usr/bin/gcc has an option to export all symbols... -Wl,-export-dynamic checking whether /usr/bin/gcc supports -Wl,--{en,dis}able-new-dtags... yes checking whether _LIBCPP_VERSION is declared... no checking how to enable C++ '11 features in /usr/bin/g++ ... -std=gnu++11 checking how to enable C '11 or at least '99 features in /usr/bin/gcc ... -std=gnu11 -fgnu89-inline checking for dpkg-architecture... /usr/bin/dpkg-architecture checking for gawk... no checking for mawk... mawk checking for GNU make... /usr/bin/make checking for /usr/bin/make... /usr/bin/make checking whether ln -s works... yes checking for ranlib... ranlib checking for ar... ar cr checking ranlib's effectiveness... neutral checking for strip... strip checking whether strip loses runtime type information... no checking for ccache... no checking for tail... /usr/bin/tail checking whether /usr/bin/tail accepts modern syntax (-n N)... yes checking for basename... /usr/bin/basename checking for sed... /bin/sed checking for touch... /bin/touch checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking how to run /bin/grep -E quietly... /bin/grep -E -q checking for valgrind... no checking for ldd... /usr/bin/ldd checking whether /usr/bin/ldd accepts -r... yes checking how to run the C++ preprocessor... /usr/bin/g++ -std=gnu++11 -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for size_t... yes checking for size_t... (cached) yes checking size of size_t... 4 checking for amq... no checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -Wl,--no-allow-shlib-undefined... yes checking how to run the C preprocessor... gcc -E checking whether cross-directory hard links work... yes checking iostream usability... yes checking iostream presence... yes checking for iostream... yes checking iostream.h usability... no checking iostream.h presence... no checking for iostream.h... no checking fstream usability... yes checking fstream presence... yes checking for fstream... yes checking fstream.h usability... no checking fstream.h presence... no checking for fstream.h... no checking strstream usability... yes checking strstream presence... yes checking for strstream... yes checking strstream.h usability... no checking strstream.h presence... no checking for strstream.h... no checking strstrea.h usability... no checking strstrea.h presence... no checking for strstrea.h... no checking for inttypes.h... (cached) yes checking limits usability... yes checking limits presence... yes checking for limits... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for unistd.h... (cached) yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for wstring... yes checking for socklen_t... yes checking atomic.h usability... no checking atomic.h presence... no checking for atomic.h... no checking cpuid.h usability... no checking cpuid.h presence... no checking for cpuid.h... no checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking ieeefp.h usability... no checking ieeefp.h presence... no checking for ieeefp.h... no checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking sys/epoll.h usability... yes checking sys/epoll.h presence... yes checking for sys/epoll.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking sys/sysinfo.h usability... yes checking sys/sysinfo.h presence... yes checking for sys/sysinfo.h... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking x86intrin.h usability... no checking x86intrin.h presence... no checking for x86intrin.h... no checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking libgen.h usability... yes checking libgen.h presence... yes checking for libgen.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking paths.h usability... yes checking paths.h presence... yes checking for paths.h... yes checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking valgrind/memcheck.h usability... no checking 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/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/blastdb/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/cache/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/id1/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/id2/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/seqmasks_io/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/edit/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/format/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/services/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/services/unit_test/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_writer/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader/test/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/blastdb_format/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/align_format/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/align_format/unit_test/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/alnmgr/Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/./Makefile config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc/common/ncbi_build_ver.h config.status: creating /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc/ncbiconf_unix.h config.status: executing default commands /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/corelib/ncbicfg.c is updated /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc/common/ncbi_build_ver.h is updated make[2]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/build-system/helpers' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/helpers TMPL=run_with_lock -kw all make[3]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/build-system/helpers' gcc -c -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/helpers/run_with_lock.c -o run_with_lock.o gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -fPIE -pie run_with_lock.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lm -lpthread -o run_with_lock /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f run_with_lock /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f run_with_lock /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/run_with_lock make[3]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/build-system/helpers' make[2]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/build-system/helpers' Platform not defined for Linux armv7l -- please fix me project_tree_builder is not found at /net/snowman/vol/export2/win-coremake/App/Ncbi/cppcore/ptb/UNKNOWN/4.1.5/project_tree_builder Will build project_tree_builder locally ********************************************************************** Building project_tree_builder ********************************************************************** make[2]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/corelib' make[3]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/corelib' /usr/bin/make[3] (Makefile.precompile): Nothing to be done for `all'. make[3]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/corelib' /usr/bin/make[2] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib TMPL=corelib -w all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_os_unix.cpp:34:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/blob_storage.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/blob_storage.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ddumpable.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ddumpable.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbienv.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/env_reg.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/env_reg.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/metareg.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/metareg.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_config.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_param.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/blob_storage.cpp -o blob_storage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ddumpable.cpp -o ddumpable.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/env_reg.cpp -o env_reg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/metareg.cpp -o metareg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_process.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_safe_static.hpp:48, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_safe_static.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_signal.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_signal.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_stack.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_system.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbiapp.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbiargs.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbiargs.cpp: In function 'std::__cxx11::string ncbi::s_CArgs_ReadFromConsole(const string&, ncbi::EEchoInput, const char*)': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbiargs.cpp:2058:56: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write( tty, prompt.data(), prompt.length()); ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbiargs.cpp:2087:50: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write( tty, thx.data(), thx.length()); ^ O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOUIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbiatomic.cpp:45: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_safe_static.hpp:48, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidbg.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_process.hpp:44:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag.cpp:849:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbidiag.hpp:1810:34: note: declared here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag.cpp:1819:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag.cpp:979:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag.cpp: In member function 'std::__cxx11::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag.cpp:1882:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag.cpp:979:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag.cpp:1907:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag.cpp:979:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag.cpp:1939:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag.cpp:979:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag.cpp:3221:48: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:354:34: note: declared here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag_p.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag_p.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbidll.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidll.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbienv.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbienv.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ RCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include ncbicfg.c -o ncbicfg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbidll.cpp -o ncbidll.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbienv.cpp -o ncbienv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/inclIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_process.hpp:44:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexec.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbiexec.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbiexpt.cpp:41: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbifile.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimempool.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbimempool.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbimtx.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbiobj.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbireg.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbistr.cpp:35:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ude /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbifile.cpp -o ncbifile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbireg.cpp -o ncbireg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbistr.cpp -o ncbistr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbistre.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbithr.cpp:45: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbitime.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/obj_store.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/obj_store.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/plugin_manager.hpp:70, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/plugin_manager.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/plugin_manager.hpp:70, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/plugin_manager_store.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/plugin_manager_store.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbistre.cpp -o ncbistre.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbithr.cpp -o ncbithr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbitime.cpp -o ncbitime.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/obj_store.cpp -o obj_store.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/stream_utils.cpp:42: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/syslog.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/syslog.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/version.cpp:457:12: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] : date(__DATE__ " " __TIME__) ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/version.cpp:457:25: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] : date(__DATE__ " " __TIME__) ^~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/version.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/version.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/request_ctx.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/request_ctx.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/request_control.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/expr.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/expr.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/stream_utils.cpp -o stream_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/syslog.cpp -o syslog.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/version.cpp -o version.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/request_ctx.cpp -o request_ctx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/request_control.cpp -o request_control.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/expr.cpp -o expr.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/incIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/resource_info.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/interprocess_lock.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_autoinit.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/perf_log.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/perf_log.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_toolkit.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbierror.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbienv.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_url.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/resource_info.cpp -o resource_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/perf_log.cpp -o perf_log.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbierror.cpp -o ncbierror.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_url.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_cookies.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_cookies.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_message.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_message.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ies.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/guard.cpp -o guard.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o /bin/rm -f libxncbi.so .libxncbi.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxncbi.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ldl -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxncbi.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxncbi.so /bin/ln -f .xncbi.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xncbi.dep make[3]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib TMPL=test_mt -w all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_mt.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/test_mt.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.so .libtest_mt.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtest_mt.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC test_mt.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libtest_mt.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libtest_mt.so /bin/ln -f .test_mt.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.test_mt.dep make[3]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib TMPL=test_boost -w all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbienv.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/test_boost.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/test_boost.cpp -o test_boost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/corelib/teamcity_messages.cpp -o teamcity_messages.o /bin/rm -f libtest_boost.so .libtest_boost.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtest_boost.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC test_boost.o teamcity_messages.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_boost.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libtest_boost.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libtest_boost.so /bin/ln -f .test_boost.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.test_boost.dep make[3]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/corelib' make[2]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/corelib' make[2]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util' /usr/bin/make[2] (Makefile.util.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util TMPL=util -w all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/random_gen.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/random_gen.cpp:75: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/utf8.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/utf8.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/checksum.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/bytesrc.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/strbuffer.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/strbuffer.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/itree.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/smalldns.cpp:34:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/random_gen.cpp -o random_gen.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/utf8.cpp -o utf8.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/checksum.cpp -o checksum.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/bytesrc.cpp -o bytesrc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/strbuffer.cpp -o strbuffer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/itree.cpp -o itree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/smalldns.cpp -o smalldns.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blastIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/thread_pool_old.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/thread_pool.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/thread_pool_old.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/ddump_viewer.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/strsearch.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/logrotate.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/logrotate.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/format_guess.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/format_guess.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/format_guess.cpp: In static member function 'static bool ncbi::CFormatGuess::IsLineAugustus(const string&)': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/format_guess.cpp:2683:75: warning: logical not is only applied to the left hand side of comparison [-Wlogical-not-parentheses] if (!NStr::SplitInTwo(remaining, " \t", head, tail) || !head.size() == 1 || ^~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/format_guess.cpp:2691:75: warning: logical not is only applied to the left hand side of comparison [-Wlogical-not-parentheses] if (!NStr::SplitInTwo(remaining, " \t", head, tail) || !head.size() == 1 || ^~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/ascii85.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/ascii85.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/md5.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/md5.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/thread_pool_old.cpp -o thread_pool_old.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/ddump_viewer.cpp -o ddump_viewer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/strsearch.cpp -o strsearch.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/logrotate.cpp -o logrotate.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/format_guess.cpp -o format_guess.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/ascii85.cpp -o ascii85.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/md5.cpp -o md5.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/file_obsolete.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/file_obsolete.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/unicode.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/unicode.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/dictionary.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/dictionary.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/static_set.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/dictionary_util.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/dictionary_util.cpp: In static member function 'static void ncbi::CDictionaryUtil::Stem(const string&, std::__cxx11::string*)': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/thread_nonstop.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/thread_nonstop.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/sgml_entity.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/sgml_entity.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/static_set.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/static_set.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/file_obsolete.cpp -o file_obsolete.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/unicode.cpp -o unicode.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/dictionary.cpp -o dictionary.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/dictionary_util.cpp -o dictionary_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/thread_nonstop.cpp -o thread_nonstop.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/sgml_entity.cpp -o sgml_entity.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/static_set.cpp -o static_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbiIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/transmissionrw.cpp:35:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/mutex_pool.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/mutex_pool.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/ncbi_cache.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/ncbi_cache.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/line_reader.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/line_reader.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/ncbi_table.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/util_exception.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/multi_writer.cpp:32:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -blast+-2.5.0/c++/src/util/transmissionrw.cpp -o transmissionrw.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/miscmath.c -o miscmath.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/mutex_pool.cpp -o mutex_pool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/ncbi_cache.cpp -o ncbi_cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/line_reader.cpp -o line_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/util_exception.cpp -o util_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/uttp.cpp -o uttp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/multi_writer.cpp -o multi_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/itransaction.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/itransaction.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/thread_pool_old.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/thread_pool.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/thread_pool.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/thread_pool_old.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/thread_pool.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/thread_pool_ctrl.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/thread_pool_ctrl.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/scheduler.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/rangelist.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/distribution.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/distribution.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/rangelist.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/rangelist.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/util_misc.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/util_misc.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/itransaction.cpp -o itransaction.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/thread_pool.cpp -o thread_pool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/thread_pool_ctrl.cpp -o thread_pool_ctrl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/scheduler.cpp -o scheduler.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/distribution.cpp -o distribution.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/rangelist.cpp -o rangelist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/util_misc.cpp -o util_misc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/table_printer.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/table_printer.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_url.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_cookies.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/retry_ctx.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/stream_source.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/file_manifest.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ E64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/histogram_binning.cpp -o histogram_binning.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/table_printer.cpp -o table_printer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/retry_ctx.cpp -o retry_ctx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/stream_source.cpp -o stream_source.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/file_manifest.cpp -o file_manifest.o /bin/rm -f libxutil.so .libxutil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxutil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC random_gen.o utf8.o checksum.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxutil.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxutil.so /bin/ln -f .xutil.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xutil.dep make[3]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util' make[2]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util' make[2]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[3]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/regexp' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/regexp TMPL=regexp -w mark-as-disabled make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/regexp' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/regexp' make[3]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/regexp' make[2]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/regexp' make[2]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/xregexp' /usr/bin/make[2] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.xregexp_template_tester.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/xregexp TMPL=xregexp -w all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/xregexp/regexp.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/xregexp/regexp.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/xregexp/arg_regexp.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/xregexp/arg_regexp.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/xregexp/mask_regexp.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/xregexp/mask_regexp.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/xregexp' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/xregexp/regexp.cpp -o regexp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /bin/rm -f libxregexp.so .libxregexp.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxregexp.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC regexp.o arg_regexp.o mask_regexp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxncbi -lpcre /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxregexp.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxregexp.so /bin/ln -f .xregexp.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xregexp.dep make[3]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/xregexp' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/xregexp TMPL=xregexp_template_tester -w all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/xregexp/regexp_template_tester.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/xregexp' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.so .libxregexp_template_tester.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxregexp_template_tester.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC regexp_template_tester.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxregexp -lxncbi -lpcre /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxregexp_template_tester.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxregexp_template_tester.so /bin/ln -f .xregexp_template_tester.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xregexp_template_tester.dep make[3]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/xregexp' make[2]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/xregexp' make[2]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/build-system/project_tree_builder' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbienv.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_utils.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/file_contents.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/file_contents.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_site.hpp:31, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_configure.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_configure.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_makefile.hpp:31, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_makefile.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_item.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_prj_generator.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_item.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_prj_generator.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/build-system/project_tree_builder' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvjIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_item.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_project_context.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_project_context.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_site.hpp:31, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_site.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_item.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_project_context.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_sln_generator.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_builder_app.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbienv.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_item.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_item.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_tree.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_tree.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-timeIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_item.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_tree_builder.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbienv.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_utils.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/file_contents.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/resolver.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_src_resolver.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_utils.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbienv.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_utils.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/file_contents.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/resolver.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/resolver.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_item.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_prj_generator.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbienv.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_projects.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_projects.cpp:30: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_dlls_info.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_item.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_project_context.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/configurable_file.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/configurable_file.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/ptb_gui.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/ptb_registry.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_item.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/mac_prj_generator.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/prj_file_collector.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]': /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ UG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxutil -lxncbi -lxregexp -lpcre -ldl -lm -lpthread -o project_tree_builder /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f project_tree_builder /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/project_tree_builder make[3]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/build-system/project_tree_builder' make[2]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/build-system/project_tree_builder' ********************************************************************** Running project_tree_builder. Please wait. ********************************************************************** ./build-system/project_tree_builder/project_tree_builder -dll -dtdep -conffile /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder.ini -logfile Flat.configuration_log /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ src Makefile.flat Done =============================================================================== NCBI C++ Toolkit documentation: Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/ Local: ./doc/public/index.html For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE LDFLAGS = -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O LIBRARIES: build as dynamic by default FEATURES: GCC MT LFS DLL DLL_BUILD unix WinMain Linux PACKAGES: enabled: Iconv Z BZ2 PCRE Boost.Spirit Boost.Test.Included disabled: UUID FUSE LocalZ LocalBZ2 LZO LocalPCRE GMP GCRYPT NETTLE GNUTLS OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON25 PYTHON26 PYTHON27 PYTHON3 PERL Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.System Boost.Test Boost.Thread C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC VDB OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF UNGIF GIF XPM FreeType FTGL MAGIC MIMETIC GSOAP AVRO Cereal SASL2 MONGODB GMOCK LAPACK LMDB PROJECTS: enabled: cgi serial objects app algo disabled: local_lbsm connext ncbi_crypt bdb dbapi ctools gui gbench Tools / flags / paths: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.mk Configuration header: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc/ncbiconf_unix.h To build everything: cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build && /usr/bin/make all_r or simply run /usr/bin/make in the current directory Alternatively, cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build && /usr/bin/make -f Makefile.flat ******* CONFIGURATION SUCCESSFUL ******* make[1]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0' cd c++/BUILD/build && \ make -j4 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" make[2]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build' /usr/bin/make -w -j --jobserver-fds=3,4 -f Makefile.flat ptb_all.real MTARGET= make[3]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build' cd corelib/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd util/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd serial/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd serial/datatool/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/serial' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/corelib' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/serial/datatool' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/serial/datatool' cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/corelib' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util' cd util/tables/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.serial.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/tables' /usr/bin/make[4] (Makefile.composition_adjustment.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/composition_adjustment' cd connect/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.cserial.lib): Nothing to be done for `export-headers'. /usr/bin/make[5] (Makefile.precompile): Nothing to be done for `all'. make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/connect' /usr/bin/make[4] (Makefile.tables.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/corelib' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/tables' cd algo/blast/core/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/core' /usr/bin/make[4] (Makefile.connect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/core' cd util/sequtil/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/sequtil' /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.connssl.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.sequtil.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/sequtil' cd util/creaders/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/serial' cd objmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/creaders' /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr' /usr/bin/make[4] (Makefile.xxconnect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.creaders.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/creaders' cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make[4] (Makefile.objmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr' cd objtools/readers/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/readers' /usr/bin/make[4] (Makefile.seqdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader' cd objmgr/util/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/corelib' cd objtools/seqmasks_io/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xconnect.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make[4] (Makefile.xobjread.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr/util' /usr/bin/make[4] (Makefile.seqmasks_io.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/seqmasks_io' cd algo/blast/dbindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xobjreadex.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make[4] (Makefile.xthrserv.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr/util' cd algo/dustmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/dustmask' /usr/bin/make[4] (Makefile.xalgoblastdbindex.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/dbindex' cd algo/winmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xalgodustmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/dustmask' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/winmask' cd algo/blast/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/readers' cd objtools/blast/services/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xalgowinmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/winmask' cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/services' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make[4] (Makefile.xblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/api' cd util/compress/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.blast_services.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/services' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/compress/api' cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make[4] (Makefile.gene_info.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make[4] (Makefile.compress.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/compress/api' cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/make[4] (Makefile.ncbi_xreader.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/make[4] (Makefile.ncbi_xreader_cache.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.ncbi_xloader_genbank.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make[4] (Makefile.ncbi_xreader_id1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' cd objtools/alnmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/alnmgr' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/connect' cd cgi/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.ncbi_xreader_id2.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' cd html/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/cgi' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/html' cd objtools/align_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.alnmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/alnmgr' cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/align_format' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make[4] (Makefile.cgi.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.align_format.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/align_format' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.html.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/html' cd algo/blast/blastinput/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make[4] (Makefile.blastdb_format.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/blastdb_format' cd util/xregexp/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.fcgi.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/xregexp' /usr/bin/make[4] (Makefile.blastinput.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/blastinput' cd objtools/cleanup/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb_rmt.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/cleanup' /usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.cleanup.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/cleanup' cd objtools/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/format' /usr/bin/make[4] (Makefile.xregexp_template_tester.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/blastdb' cd algo/blast/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xformat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/format' cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/format' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/blastinput/unit_test' cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/xregexp' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/cgi' /usr/bin/make[4] (Makefile.xblastformat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/format' cd algo/blast/igblast/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objtools/simple/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/igblast' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/simple' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make[4] (Makefile.igblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/igblast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.blast_unit_test_util.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xobjsimple.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/simple' cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_writer' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/make[4] (Makefile.seqalign_util.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.writedb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_writer' cd app/dustmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/dustmasker' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/dustmasker' cd algo/segmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/Makefile.legacy_blast builddir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast -w -j --jobserver-fds=3,4 all make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/segmask' make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/legacy_blast.pl /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/legacy_blast.pl /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/legacy_blast.pl make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/make[4] (Makefile.xalgosegmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/segmask' cd app/segmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/segmasker' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/segmasker' cd app/winmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/Makefile.update_blastdb builddir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast -w -j --jobserver-fds=3,4 all make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/winmasker' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/winmasker' make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/update_blastdb.pl /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/update_blastdb.pl /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/update_blastdb.pl make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' cd objmgr/split/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr/split' /usr/bin/make[4] (Makefile.blast_app_util.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/winmasker -w -j --jobserver-fds=3,4 all /usr/bin/make[4] (Makefile.id2_split.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr/split' cd objtools/align_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/align_format/unit_test' cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/winmasker' /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/windowmasker_2.2.22_adapter.py make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/winmasker' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/winmasker' /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/windowmasker_2.2.22_adapter.py make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/winmasker' cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/winmasker' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/winmasker' cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' cd objtools/blast/seqdb_reader/test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/services/unit_test' cd corelib/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=corelib UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=composition_adjustment UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/composition_adjustment' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `all'. /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j --jobserver-fds=3,4 all make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/corelib' cd util/tables/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=tables UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/tables' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/tables TMPL=tables -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: ‘s_CompoHeapIsValid’ defined but not used [-Wunused-function] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' cd connect/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xconnect UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/connect' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect TMPL=xconnect -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/tables' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.so .libtables.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtables.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC raw_scoremat.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libtables.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libtables.so /bin/ln -f .tables.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.tables.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/tables' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/run_with_lock: Adjusting base from make_xconnect to make__connect_common per /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/.#lock-map. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/tables' cd util/sequtil/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=sequtil UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/sequtil' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/sequtil TMPL=sequtil -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/connect' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_types.c -o ncbi_types.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_core.c -o ncbi_core.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/nIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_util.c:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_util.c: In function ‘CORE_SetLOGFILE_NAME_Ex’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_util.c:148:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(1, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -WforIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/sequtil/sequtil.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: ‘s_DistinctAlignmentsLength’ defined but not used [-Wunused-function] s_DistinctAlignmentsLength(BlastCompo_Alignment * list) ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: ‘s_AlignmentsAreSorted’ defined but not used [-Wunused-function] s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:77: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_DoLog’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:503:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(112, level, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:195:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:543:13: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(109, level, data, size, ^~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:576:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(113, level, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:584:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_InitAPI_’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:866:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Secure socket layer (SSL) has not" ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostname’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:175:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:1011:13: note: in expansion of macro ‘CORE_LOG_ERRNO_EXX’ CORE_LOG_ERRNO_EXX(103, eLOG_Error, ^~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:1020:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(104, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyname_’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:1153:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(106, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_getlocalhostaddress’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:1193:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, reget == eDefault ? eLOG_Warning : eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyname’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:1219:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(155, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyaddr_’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:1350:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(108, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyaddr’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:1384:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(10, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘x_TryLowerSockFileno’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:1493:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(111, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_Select_’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:1618:21: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(145, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:1747:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(5, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_Poll_’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:1891:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(146, eLOG_Critical, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:2036:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(147, ready ? eLOG_Warning : eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_IsConnected_’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:2610:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Trace, ^~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:2620:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(6, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:2655:25: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Trace, ^~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_Recv’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:2806:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(7, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_Read_’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:2987:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_Send’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:3337:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(11, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_WritePending’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:3489:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(12, sock->log != eOff ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_Shutdown’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:3661:21: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, !tv || (tv->tv_sec | tv->tv_usec) ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:3698:25: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(127, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:3747:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(16, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_Close_’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:3811:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(17, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:3827:21: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(18, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:3857:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(19, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:3916:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(21, abort == 1 ? eLOG_Warning : eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_Connect_’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4022:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(131, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4039:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(142, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4058:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(22, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4084:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(23, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4128:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(24, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4143:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(151, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4154:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(135, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4174:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(129, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4215:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(25, sock->log != eOff ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4259:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(26, sock->log != eOff ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_Create’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4351:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(27, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_CreateOnTop’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4404:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(47, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4427:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(148, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4465:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(48, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4506:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(50, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4520:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(49, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4583:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(132, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4605:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(153, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4616:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(138, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4636:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(124, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4651:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(43, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_CreateListening’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4703:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(144, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4737:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(34, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4783:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(35, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4838:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(36, error != SOCK_EADDRINUSE ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4859:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(150, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4910:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(38, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4929:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(37, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4980:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(110, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:4994:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(115, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_Accept’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5041:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(39, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5097:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(40, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5156:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(41, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5215:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(42, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5226:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(152, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5237:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(137, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5257:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(128, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_CloseListening’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5302:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(44, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5331:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(45, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_RecvMsg’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5419:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(20, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5467:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(94, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘s_SendMsg’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5502:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(154, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5518:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(88, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5527:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(89, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5577:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(90, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5623:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(91, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘TRIGGER_Create’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5666:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(28, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5676:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(143, eLOG_Warning, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5688:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(29, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5698:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(30, eLOG_Warning, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5717:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(116, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘TRIGGER_Close’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5779:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(117, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘LSOCK_GetOSHandleEx’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:5990:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(46, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Reconnect’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6178:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(52, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6188:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(53, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6200:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(51, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Shutdown’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6230:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(54, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6237:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(55, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6245:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(15, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Wait’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6375:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(56, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6403:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(57, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6417:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(58, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6431:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(59, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6440:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(60, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6450:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(61, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6460:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(62, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetTimeout’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6597:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(63, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_GetTimeout’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6638:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(64, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Read’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6680:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(65, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6690:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(66, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_ReadLine’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6721:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(125, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Pushback’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6797:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(67, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Write’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6849:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(68, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6876:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(69, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6886:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(70, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Abort’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6905:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(71, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:6912:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(72, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_GetOSHandleEx’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7063:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(73, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetCork’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7126:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(158, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7133:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(159, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7146:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(160, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_DisableOSSendDelay’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7163:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(156, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7170:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(157, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7183:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(75, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_CreateEx’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7224:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(76, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7263:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(77, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7313:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(130, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_Bind’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7343:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(79, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7350:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(78, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7368:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(80, error != SOCK_EADDRINUSE ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7384:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(114, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_Connect’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7413:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(82, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7420:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(81, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7439:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(83, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7452:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(84, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7481:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(85, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_WaitMsg’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7509:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(96, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7516:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(95, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_RecvMsg’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7555:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(93, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7562:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(92, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_SendMsg’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7599:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(87, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7606:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(86, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_WipeMsg’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7638:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(98, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7645:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(97, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7665:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(99, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_SetBroadcast’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7683:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(101, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7690:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(100, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7710:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(102, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetReuseAddress’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:7872:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(74, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetupSSL’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c:8263:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Cannot reset SSL while it is in use"); ^~~~~~~~ mat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libcomposition_adjustment.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libcomposition_adjustment.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libcomposition_adjustment.so /bin/ln -f .composition_adjustment.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.composition_adjustment.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/composition_adjustment' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/composition_adjustment' cd util/creaders/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=creaders UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/creaders' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/creaders TMPL=creaders -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/sequtil/sequtil_convert.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/sequtil/sequtil_convert_imp.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/creaders' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/creaders/alnread.c -o alnread.o /bin/rm -f libcreaders.so .libcreaders.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libcreaders.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC alnread.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcreaders.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libcreaders.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libcreaders.so /bin/ln -f .creaders.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.creaders.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/creaders' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/creaders' cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=gene_info UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j --jobserver-fds=3,4 all make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd connect/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=connect UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/connect' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect TMPL=connect -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/run_with_lock: Adjusting base from make_connect to make__connect_common per /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/.#lock-map. Waiting for /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/connect/make__connect_common.lockIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connutil.c:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connutil.c: In function ‘ConnNetInfo_Log’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:114:54: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ LOG_Write(lg, code, subcode, level, THIS_MODULE, CORE_CURRENT_FUNCTION, \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connutil.c:1366:9: note: in expansion of macro ‘LOG_WRITE’ LOG_WRITE(lg, NCBI_C_ERRCODE_X, 11, ^~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connutil.c: In function ‘URL_ConnectEx’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connutil.c:1585:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(2, eLOG_Critical, "[URL_Connect] Bad argument(s)"); ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connutil.c:1598:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Critical, ^~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connutil.c:1626:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connutil.c:1637:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connutil.c:1683:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(5, eLOG_Error, x_errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connutil.c:1696:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(6, eLOG_Error, x_errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connutil.c:1735:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connutil.c: In function ‘URL_Connect’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connutil.c:1768:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(9, eLOG_Error, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connutil.c:1808:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/sequtil/sequtil_manip.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp: In member function ‘void ncbi::CGeneInfo::ToString(std::__cxx11::string&, bool, const string&, unsigned int) const’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp:177:60: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(GetDescription(), " ", strDescrWords); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c: In function ‘x_ReInit’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:273:13: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(4, ReInit, eLOG_Critical, "Partial re-init not allowed"); ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:303:21: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(3, Close, ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:307:21: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(3, ReInit, eLOG_Error, ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c: In function ‘s_Open’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:384:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(5, Open, eLOG_Error, "Failed to open connection"); ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_CreateEx’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:426:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(2, Create, eLOG_Error, "NULL connector"); ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_ReInit’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:448:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(1, ReInit); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:448:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(1, ReInit); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetType’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:456:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(6, GetType, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:456:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(6, GetType, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Description’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:465:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(7, Description, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:465:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(7, Description, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetPosition’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:477:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(30, GetPosition, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:477:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(30, GetPosition, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:490:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(31, GetPosition, eLOG_Error, errbuf, 0); ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_SetTimeout’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:506:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(8, SetTimeout); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:506:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(8, SetTimeout); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:546:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(9, SetTimeout, eLOG_Error, errbuf, eIO_InvalidArg); ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetTimeout’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:561:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(10, GetTimeout, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:561:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(10, GetTimeout, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:569:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(11, GetTimeout, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:584:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(12, GetTimeout, eLOG_Error, errbuf, 0); ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Wait’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:600:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(13, Wait); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:600:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(13, Wait); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:644:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(event != eIO_Read ? 15 : 14, Wait, level, ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c: In function ‘s_CONN_Write’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:665:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(16, Write, eLOG_Critical, "Cannot write data"); ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:707:13: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(17, Write, level, "Unable to write data"); ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Write’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:749:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(18, Write); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:749:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(18, Write); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Pushback’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:784:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(19, Pushback); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:784:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(19, Pushback); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Flush’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:804:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(20, Flush); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:804:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(20, Flush); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:819:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(21, Flush, eLOG_Warning, "Failed to flush"); ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c: In function ‘s_CONN_Read’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:844:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(22, Read, eLOG_Critical, "Cannot read data"); ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:885:17: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(32, Read, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:911:13: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(23, Read, level, "Unable to read data"); ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Read’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:962:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(24, Read); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:962:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(24, Read); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_ReadLine’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:1011:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(25, ReadLine); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:1011:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(25, ReadLine); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:1059:17: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(35, ReadLine, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Status’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:1078:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(26, Status); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:1078:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(26, Status); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Close’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:1117:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(27, Close); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:1117:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(27, Close); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_SetCallback’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:1137:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(28, SetCallback); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:1137:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(28, SetCallback); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:1143:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(29, SetCallback, eLOG_Error, errbuf, eIO_InvalidArg); ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetSOCK’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:1164:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(36, GetSOCK); ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c:1164:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(36, GetSOCK); ^~~~~~~~~~~~~ .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connector.c:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connector.c: In function ‘METACONN_Remove’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connector.c:41:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connector.c:63:13: note: in expansion of macro ‘METACONN_LOG’ METACONN_LOG(34, eLOG_Error, ^~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connector.c: In function ‘METACONN_Insert’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connector.c:41:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connector.c:92:9: note: in expansion of macro ‘METACONN_LOG’ METACONN_LOG(33, eLOG_Error, ^~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket_connector.c:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket_connector.c: In function ‘s_VT_Open’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket_connector.c:171:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(163, eLOG_Error, ^~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/sequtil/sequtil.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/sequtil/sequtil_tables.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/sequtil/sequtil_tables.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_util.c -o ncbi_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_Adjust’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:367:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(2, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:382:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(17, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:408:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:423:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(18, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:433:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:457:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_Connect’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:560:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:700:25: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(20, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_ConnectAndSend’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:911:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(6, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c: In function ‘x_ReadChunkHead’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:1042:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(23, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_ReadData’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:1113:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(24, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:1137:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(25, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_ReadHeader’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:1211:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(7, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:1248:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, level, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:195:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:1310:9: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(9, fatal ? eLOG_Error : eLOG_Note, hdr, size, ^~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:1327:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(22, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:195:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:1346:17: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(9, eLOG_Note, hdr, size, ^~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:1394:25: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(10, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:1553:21: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:1569:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(11, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:1624:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(19, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:1629:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(12, err && !(uuu->flags & fHTTP_SuppressMessages) ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:1640:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:195:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:1648:17: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(14, eLOG_Note, s, n, ^~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:1657:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(15, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_Read’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:1828:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(16, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c:1872:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(21, eLOG_Warning, ^~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbienv.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/env_reg.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/sequtil/sequtil_shared.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:115: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Create’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:243:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:264:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(2, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_AttachFast’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:288:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:297:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Attach’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:326:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(34, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c: In function ‘s_HEAP_Find’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:422:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Alloc’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:630:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(6, eLOG_Warning, "Heap Alloc: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:636:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:683:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Free’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:805:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(10, eLOG_Warning, "Heap Free: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:811:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(11, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:824:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:832:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(12, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:844:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(14, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_FreeFast’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:856:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(15, eLOG_Warning, "Heap Free: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:862:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(16, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:876:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(17, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:887:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(18, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:894:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(19, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Trim’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:916:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(30, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:951:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(31, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:978:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(32, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c: In function ‘s_HEAP_Walk’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:1000:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(28, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:1014:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(26, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:1017:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(27, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:1029:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(23, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:1116:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(21, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:1131:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(20, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:1149:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(22, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:1160:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(24, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Walk’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:1176:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(29, eLOG_Warning, "Heap Walk: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Destroy’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c:1278:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(33, eLOG_Error, ^~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/sequtil' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.so .libsequtil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libsequtil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libsequtil.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libsequtil.so /bin/ln -f .sequtil.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.sequtil.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/sequtil' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/sequtil' cd html/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=html UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/html' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html TMPL=html -w -j --jobserver-fds=3,4 all .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_service.c:40: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_service.c: In function ‘x_ServiceName’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_service.c:84:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_service.c:93:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_service.c: In function ‘x_Open’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_service.c:319:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html/node.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_dispd.c:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_dispd.c: In function ‘s_Resolve’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_dispd.c:198:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Error, ^~~~~~~~~~~ TRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_service.c -o ncbi_service.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOUIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_service_connector.c:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_OpenDispatcher’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_service_connector.c:94:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_ParseHeader’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_service_connector.c:169:49: warning: format ‘%n’ expects argument of type ‘int *’, but argument 7 has type ‘unsigned int *’ [-Wformat=] if (sscanf(header, "%u.%u.%u.%u%n", &i1, &i2, &i3, &i4, &n) < 4 ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_service_connector.c:170:51: warning: format ‘%n’ expects argument of type ‘int *’, but argument 5 has type ‘unsigned int *’ [-Wformat=] || sscanf(header + n, "%hu%x%n", &uuu->port, &tkt, &m) < 2 ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_service_connector.c:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_Open’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_service_connector.c:823:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_service_connector.c:849:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_VT_Open’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_service_connector.c:1039:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(6, eLOG_Error, ^~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c: In function ‘s_SendRcpt’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:389:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(3, "Recipient address is too long"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:392:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:400:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(4, write_error); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:403:13: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(5, proto_error, buf); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c: In function ‘CORE_SendMailEx’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:455:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(6, "Invalid magic cookie"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:460:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(7, "At least one message recipient must be specified"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:470:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(8, "Cannot connect to sendmail", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:477:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(9, "Protocol error in connection init", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:482:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(10, "Unable to get local host name"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:487:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(11, "Write error in HELO command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:490:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(12, "Protocol error in HELO command", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:495:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(13, "Write error in MAIL command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:498:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(14, "Protocol error in MAIL command", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:519:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(15, "Write error in DATA command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:521:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(16, "Protocol error in DATA command", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:552:21: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(32, "Write error in sending Date"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:559:21: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(33, "Write error in sending From"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:567:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(17, "Write error in sending Subject"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:574:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(18, "Write error in sending To"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:581:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(19, "Write error in sending Cc"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:585:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(2, eLOG_Warning, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:596:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(20, "Write error in sending mailer information"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:623:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(21, "Write error while sending custom header"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:626:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(22, "Header write error"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:628:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(23, "Write error while finalizing custom header"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:636:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(24, "Write error in message body delimiter"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:662:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(25, "Write error while sending message body"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:665:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(26, "Body write error"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:668:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(27, "Write error while finalizing message body"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:671:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(28, "Write error while finalizing message"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:676:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(29, "Protocol error in sending message", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:679:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(30, "Write error in QUIT command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c:681:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(31, "Protocol error in QUIT command", buffer); ^~~~~~~~~~~~~~~~ .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/gene_info_reader/file_utils.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp: In static member function ‘static void ncbi::CGeneFileUtils::ReadGeneInfo(ncbi::CNcbiIfstream&, int, ncbi::CRef&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:161:42: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(strBuf, "\t", strItems); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/gene_info_reader/file_utils.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c:50: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPCloseData’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c:143:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c:148:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c:162:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(11, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c:166:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c:180:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, xxx->send ? eLOG_Error : eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_FTPReply’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c:283:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(10, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_FTPCommandEx’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c:359:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPLogin’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c:592:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPPassive’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c:950:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(2, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPXfer’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c:1110:21: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_FTPPollCntl’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c:1635:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(12, xxx->data ? eLOG_Error : eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_VT_Open’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c:1901:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_VT_Write’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c:1976:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(6, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_CreateConnector’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c:2286:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "fFTP_UseProxy not yet implemented"); ^~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/html/html.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html/html.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.so .libgene_info.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgene_info.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC gene_info.o gene_info_reader.o file_utils.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libgene_info.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libgene_info.so /bin/ln -f .gene_info.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.gene_info.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader' cd corelib/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=test_boost UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/corelib' cd util/xregexp/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xregexp UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/xregexp' /usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/xregexp' cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gene_info_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/gene_info_reader/unit_test TMPL=gene_info_unit_test -w -j --jobserver-fds=3,4 all RCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_local.c -o ncbi_local.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_version.c -o ncbi_version.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_StringConcat’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:433:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_StringNConcat’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:458:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_RegGet’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:483:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:497:13: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_MemAlloc, eLOG_Warning, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_GetLBOSAddressEx’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:565:5: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Trace, "Getting LBOS addresses..."); ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:579:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Use of custom LBOS address was " ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:586:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Did not manage to copy custom " ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:594:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Trying to find LBOS using " ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:604:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Trying to find LBOS in " ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ReadLbosresolver’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:723:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("LBOS mapper: " ^~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:731:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_ReadLBOSResolve: " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:739:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ^~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:756:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (s_LBOS_Lbosresolver == NULL) ^~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:759:9: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ s_LBOS_Lbosresolver = strdup(str + 7); ^~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ConnectURL’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:822:5: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Note, ("Parsing URL \"%s\"", url)); ^~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:824:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Cannot parse URL"); ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:827:5: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Note, ("Creating HTTP%s connector", ^~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:834:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Cannot create HTTP connector"); ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:837:5: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Note, "Creating connection"); ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:839:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Cannot create connection"); ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_UrlReadAll’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:898:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_UrlReadAll: No RAM. " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:910:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned " ^~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:938:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:952:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer shrink error, using " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ResolveIPPort’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:984:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1043:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_FillCandidates’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1183:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ("Trying to find servers of \"%s\" with " ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1189:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ("Ho servers of \"%s\" found by LBOS", ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1194:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ("Found %u servers of \"%s\" with " ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1207:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_CheckAnnounceArgs’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1237:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1244:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, missing http:// or " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1254:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1264:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, incorrect port."); ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1268:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1273:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1278:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_CheckDeannounceArgs’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1292:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1298:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1303:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1308:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Replace0000WithIP’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1393:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1401:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1408:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ConstructData’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1552:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Error, "Could not allocate memory for LBOS mapper"); ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Initialize’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1623:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Trace, "No DTAB in registry"); ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1625:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1634:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Note, "LBOS is turned ON in config."); ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1636:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1652:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ParseHeader’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1700:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned status " ^~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Reset’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1763:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_Reset: No RAM. " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘SERV_LBOS_Open’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1889:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Mask was provided instead of service name. " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1897:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "\"iter->name\" is null, not able " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1912:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Could not concatenate dbaf with service " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1927:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:1936:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Announce’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:2061:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Announce failed. No LBOS found."); ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:2066:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("Announce failed. " ^~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:2075:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:2085:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "g_LBOS_Announce: LBOS answered 200 OK, but " ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:2098:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("Announce failed. " ^~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_Announce’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:2164:13: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Critical, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_AnnounceFromRegistry’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:2233:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(eLBOS_InvalidArgs, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:2240:53: warning: format ‘%d’ expects argument of type ‘int *’, but argument 3 has type ‘unsigned int *’ [-Wformat=] if (strlen(port_str) > 5 || (sscanf(port_str, "%d", &port) != 1) || ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_Deannounce’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:2355:13: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_DNSResolve, eLOG_Critical, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_DeannounceAll’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:2413:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_MemAlloc, eLOG_Warning, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_CheckConfArgs’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:2465:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Warning, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:2472:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(eLBOS_InvalidArgs, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_ServiceVersionSet’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c:2564:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Warning, ^~~~~~~~~~ .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/parson.c: In function ‘remove_comments’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/parson.c:282:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for (i = 0; i < (ptr - string) + end_token_len; i++) ^~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/parson.c:284:12: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘for’ string = ptr + end_token_len - 1; ^~~~~~ .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_socket.hpp:38:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_socket_unix.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket_cxx.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_core_cxx.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/html/html.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html/htmlhelper.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html/page.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp -o gene_info_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gene_info_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ltest_boost -lgene_info -lxncbi -ldl -lm -lpthread -o gene_info_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f gene_info_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/gene_info_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' cd util/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util' cd serial/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=serial UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/serial' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial TMPL=serial -w -j --jobserver-fds=3,4 all .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/email_diag_handler.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/email_diag_handler.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/hookdata.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_core_cxx.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_namedpipe.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_namedpipe_connector.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_conn_stream.hpp:73, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_conn_streambuf.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_conn_streambuf.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/hookdatakey.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_core_cxx.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_namedpipe.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_namedpipe_connector.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_conn_stream.hpp:73, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_conn_streambuf.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_conn_stream.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/typeinfo.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html/pager.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/typeinfo.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ .Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos.c -o ncbi_lbos.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/parson.c -o parson.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objectinfo.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objectinfo.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_conn_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/stream_utils.hpp:45:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/cgi/ncbicgi.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html/selection.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objectiter.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectiter.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objectiter.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objectio.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectiter.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectio.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objectio.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/html/html.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/html/components.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html/components.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/html' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html/node.cpp -o node.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html/html.cpp -o html.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html/htmlhelper.cpp -o htmlhelper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html/page.cpp -o page.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html/pager.cpp -o pager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html/selection.cpp -o selection.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html/components.cpp -o components.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialdef.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/typeref.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/typeref.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/html/commentdiag.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html/commentdiag.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/typeref.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_core_cxx.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_namedpipe.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_namedpipe.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/serial' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/hookdata.cpp -o hookdata.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/typeinfo.cpp -o typeinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objectinfo.cpp -o objectinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objectiter.cpp -o objectiter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objectio.cpp -o objectio.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/typeref.cpp -o typeref.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-maIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/html/indentstream.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html/indentstream.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/typemap.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/html/node.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html/html_exception.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_core_cxx.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_namedpipe.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_namedpipe_connector.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_namedpipe_connector.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialdef.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/stdtypes.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypesimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/stdtypes.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/html/htmlhelper.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html/writer_htmlenc.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html/commentdiag.cpp -o commentdiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html/indentstream.cpp -o indentstream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html/html_exception.cpp -o html_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.so .libxhtml.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxhtml.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxhtml.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxhtml.so /bin/ln -f .xhtml.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xhtml.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/html' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/html' cd util/compress/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=compress UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/compress/api' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_pipe.cpp:41: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned int/usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api TMPL=compress -w -j --jobserver-fds=3,4 all eger expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/compress/compress.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/compress.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/compress/compress.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/compress/stream.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/streambuf.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/stream.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_process.hpp:44:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_pipe.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_pipe_connector.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_pipe_connector.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/enumerated.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/enumerated.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/enumerated.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/compress/compress.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/compress/stream.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/streambuf.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/streambuf.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_core_cxx.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_conn_reader_writer.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_conn_reader_writer.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -DIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/compress/compress.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/compress/stream.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/compress/stream_util.hpp:49, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/stream_util.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_socket.hpp:38:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_userhost.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/typeinfo.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/ptrinfo.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/ptrinfo.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/ptrinfo.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_session.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/compress/compress.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/compress/stream.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/compress/bzip2.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/bzip2.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_safe_static.hpp:48, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/autoptrinfo.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/autoptrinfo.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/zlib.cpp:40: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/continfo.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/continfo.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos_cxx.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypesimpl.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/stltypes.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/stltypes.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ p=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/typemap.cpp -o typemap.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/stdtypes.cpp -o stdtypes.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/enumerated.cpp -o enumerated.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/continfo.cpp -o continfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/stltypes.cpp -o stltypes.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-tiIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/lzo.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/memberid.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/compress/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/compress.cpp -o compress.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/stream.cpp -o stream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/zlib.cpp -o zlib.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/lzo.cpp -o lzo.o /usr/bin/g++ -stdIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_gnutls.c:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_gnutls.c: In function ‘s_GnuTlsInit’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_gnutls.c:690:5: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Unavailable feature GNUTLS"); ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_gnutls.c: In function ‘NcbiSetupGnuTls’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_gnutls.c:714:5: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Unavailable feature GNUTLS"); ^~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/compress/reader_zlib.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/reader_zlib.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/memberlist.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ._REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o /bin/rm -f libxconnect.so .libxconnect.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxconnect.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o parson.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_gnutls.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxncbi -lnsl -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxconnect.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxconnect.so /bin/ln -f .xconnect.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xconnect.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/connect' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/connect' cd cgi/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=cgi UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/cgi' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi TMPL=cgi -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/run_with_lock: Adjusting base from make_cgi to make__cgi_common per /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/.#lock-map. In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbienv.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/ncbicgi.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ . Acquired /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/connect/make__connect_common.lock for PID 29494 (make__connect_common) In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/tar.cpp:52: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/connect' /bin/rm -f libconnect.so .libconnect.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libconnect.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o parson.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lnsl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libconnect.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libconnect.so /bin/ln -f .connect.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.connect.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/connect' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/connect' cd algo/blast/core/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/core' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core TMPL=blast -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/aa_ungapped.c: In function ‘s_BlastAaWordFinder_TwoHit’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/aa_ungapped.c:484:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/aa_ungapped.c:491:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/aa_ungapped.c: In function ‘s_BlastAaWordFinder_OneHit’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/aa_ungapped.c:751:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/aa_ungapped.c:758:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/item.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_engine.c: In function ‘BLAST_PreliminarySearchEngine’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_engine.c:1489:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_engine.c:1627:22: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] ((T_MB_IdxEndSearchIndication)( ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_engine.c:1705:10: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] ((T_MB_IdxEndSearchIndication)( ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/classinfob.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/classinfob.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/core' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFEIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/member.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/member.cpp:40: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbienv.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/cgiapp.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_aascan.c: In function ‘BlastChooseProteinScanSubject’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_aascan.c:567:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastAaScanSubject; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_aascan.c:570:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastSmallAaScanSubject; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_aascan.c:575:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastCompressedAaScanSubject; ^ -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FI/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nalookup.c: In function ‘s_BlastNaHashLookupFinalize’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nalookup.c:1682:36: warning: ISO C forbids passing argument 3 of ‘s_NaHashLookupRemovePolyAWords’ between function pointer and ‘void *’ [-Wpedantic] lookup->hash_callback, lookup->mask); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nalookup.c:1605:13: note: expected ‘TNaLookupHashFunction {aka unsigned int (*)(unsigned char *, unsigned int)}’ but argument is of type ‘void *’ static Int2 s_NaHashLookupRemovePolyAWords(BackboneCell** thin_backbone, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nalookup.c: In function ‘BlastNaHashLookupTableNew’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nalookup.c:1875:27: warning: ISO C forbids assignment between function pointer and ‘void *’ [-Wpedantic] lookup->hash_callback = FNV_hash; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nalookup.c:1911:43: warning: ISO C forbids passing argument 7 of ‘BlastHashLookupIndexQueryExactMatches’ between function pointer and ‘void *’ [-Wpedantic] lookup->hash_callback, ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/core/blast_nalookup.h:36:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nalookup.c:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/core/blast_lookup.h:169:6: note: expected ‘TNaLookupHashFunction {aka unsigned int (*)(unsigned char *, unsigned int)}’ but argument is of type ‘void *’ void BlastHashLookupIndexQueryExactMatches(BackboneCell **backbone, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_NaChooseScanSubject’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:291:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastNaScanSubject_8_4; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:293:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastNaScanSubject_Any; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_SmallNaChooseScanSubject’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:1320:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_4_1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:1322:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:1327:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_5_1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:1329:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:1334:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_6_1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:1336:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_6_2; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:1338:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:1343:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:1345:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_2; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:1347:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_3; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:1349:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:1354:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_8_4; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:1360:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:1364:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_1Mod4; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:1368:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_2Mod4; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:1372:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_3Mod4; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_MBChooseScanSubject’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:2620:24: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_MB_DiscWordScanSubject_TwoTemplates_1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:2622:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_18_1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:2624:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_21_1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:2626:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:2634:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_9_1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:2636:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_9_2; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:2638:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:2643:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_1; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:2645:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_2; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:2647:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_3; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:2649:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:2655:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:2658:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_1Mod4; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:2661:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_2Mod4; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:2664:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_3Mod4; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:2676:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_BlastNaHashLookupRetieveHits’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:2705:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (TNaLookupHashFunction)lookup->hash_callback; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_NaHashChooseScanSubject’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:2978:32: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void*)s_BlastNaHashScanSubject_Any; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘BlastChooseNucleotideScanSubjectAny’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:2997:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_BlastNaScanSubject_Any; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:3000:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:3003:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void*)s_BlastNaHashScanSubject_Any; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c:3006:12: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_MBScanSubject_Any; ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/classinfo.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/classinfo.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘s_IsSeedMasked’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:485:15: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] return !(((T_Lookup_Callback)(lookup_wrap->lookup_callback)) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘BlastNaWordFinder’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1619:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1620:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1632:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1633:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1640:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1641:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1654:23: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘MB_IndexedWordFinder’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1720:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1722:25: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbGetResults)lookup_wrap->read_indexed_db; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘BlastChooseNaExtend’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1792:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_MBLookup; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1796:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1799:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendAligned; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1801:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtend; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1805:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_SmallNaLookup; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1809:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1813:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastSmallNaExtendAlignedOneByte; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1815:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastSmallNaExtend; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1822:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_NaLookup; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1826:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1829:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendAligned; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1831:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtend; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘JumperNaWordFinder’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1971:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1983:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1991:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:1998:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:2011:23: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘ShortRead_IndexedWordFinder’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:2184:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c:2186:25: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbGetResults)lookup_wrap->read_indexed_db; ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/variant.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/variant.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ LE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_message.c -o blast_message.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_options.c -o blast_options.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-me -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/memberid.cpp -o memberid.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/memberlist.cpp -o memberlist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/item.cpp -o item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/classinfob.cpp -o classinfob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/member.cpp -o member.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/classinfo.cpp -o classinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/variant.cpp -o variant.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-bIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/cgictx.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/classinfob.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/choice.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/choice.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/choice.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_util.c: In function ‘BlastProgram2Number’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_util.c:306:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] else if (strcasecmp("mapper", program) == 0) ^~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_util.c:309:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ return 0; ^~~~~~ protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_stat.c -o blast_stat.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_util.c -o blast_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/gapinfo.c -o gapinfo.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopeIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_safe_static.hpp:48, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/choiceptr.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/choiceptr.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/choiceptr.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/link_hsps.c: In function ‘s_FwdCompareHSPs’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/link_hsps.c:133:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] else if (h1->context > h2->context) ^~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/link_hsps.c:136:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ if (h1->query.offset < h2->query.offset) ^~ nmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/greedy_align.c -o greedy_align.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/hspfilter_collector.c -o hspfilter_collector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/hspfilter_besthit.c -o hspfilter_besthit.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/hspfilter_culling.c -o hspfilter_culling.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/link_hsps.c -o link_hsps.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/lookup_util.c -o lookup_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/lookup_wrap.c -o lookup_wrap.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/matrix_freq_ratios.c -o matrix_freq_ratios.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/ncbi_std.c -o ncbi_std.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/ncbi_math.c -o ncbi_math.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_encoding.c -o blast_encoding.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/pattern.c -o pattern.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/phi_extend.c -o phi_extend.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/archive.cpp:34:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/typeinfo.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/ptrinfo.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/aliasinfo.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/aliasinfo.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/aliasinfo.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/request_ctx.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/ncbicgir.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_program.c -o blast_program.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objistr.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objistr.cpp:46: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/split_query.c -o split_query.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/compress/archive_.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/archive_.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/ncbires.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/jumper.c -o jumper.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o /bin/rm -f libblast.so .libblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lcomposition_adjustment -lxconnect -ltables -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libblast.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so /bin/ln -f .blast.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.blast.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/core' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/core' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/compress/compress.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/compress/stream.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/compress/zlib.hpp:54, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/archive_zip.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/archive_zip.cpp:45:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/miniz/miniz.c: In function ‘ncbi::tinfl_status ncbi::tinfl_decompress(ncbi::tinfl_decompressor*, const mz_uint8*, size_t*, ncbi::mz_uint8*, ncbi::mz_uint8*, size_t*, ncbi::mz_uint32)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/miniz/miniz.c:1531:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; ^~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/miniz/miniz.c:1531:47: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘for’ for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; ^~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/miniz/miniz.c: In function ‘void ncbi::tdefl_find_match(ncbi::tdefl_compressor*, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint*, ncbi::mz_uint*)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/miniz/miniz.c:2361:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (!dist) break; p = s; q = d->m_dict + probe_pos; for (probe_len = 0; probe_len < max_match_len; probe_len++) if (*p++ != *q++) break; ^~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/miniz/miniz.c:2361:23: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ if (!dist) break; p = s; q = d->m_dict + probe_pos; for (probe_len = 0; probe_len < max_match_len; probe_len++) if (*p++ != *q++) break; ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/cgi/ref_args.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/ref_args.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/cgi/cgiapp.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/cgi_run.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/cgi' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/cgiapp.cpp -o cgiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/cgictx.cpp -o cgictx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/ncbires.cpp -o ncbires.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/ref_args.cpp -o ref_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/cgi_run.cpp -o cgi_run.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_url.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/ncbi_url.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/cgi/cgi_util.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/cgi_util.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbienv.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/cgi_serial.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objostr.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objostr.cpp:43: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ =gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/tar.cpp -o tar.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/archive.cpp -o archive.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/archive_.cpp -o archive_.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.so .libxcompress.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcompress.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxutil -lxncbi -lbz2 -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxcompress.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxcompress.so /bin/ln -f .xcompress.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xcompress.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/compress/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/compress/api' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/cgi_session.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objcopy.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objcopy.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objcopy.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/iterator.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectiter.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/iterator.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/serial.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/cgi/cgi_exception.hpp:39:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/cgi_exception.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/serial.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ last+-2.5.0/c++/src/serial/choice.cpp -o choice.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/choiceptr.cpp -o choiceptr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/aliasinfo.cpp -o aliasinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objistr.cpp -o objistr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objostr.cpp -o objostr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objcopy.cpp -o objcopy.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/iterator.cpp -o iterator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/serial.cpp -o serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protectoIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/delaybuf.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/delaybuf.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/plugin_manager.hpp:70, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/plugin_manager_store.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/cgiapp_cached.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialdef.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/pack_string.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/pack_string.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/exception.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/exception.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/pack_string.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/pack_string.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/exception.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objhook.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objhook.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objlist.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objstack.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ r-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/delaybuf.cpp -o delaybuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/pack_string.cpp -o pack_string.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/exception.cpp -o exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objhook.cpp -o objhook.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objlist.cpp -o objlist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objstack.cpp -o objstack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objostrasn.cpp -o objostrasn.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/buIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objostrasn.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objostrasn.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objostrasn.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/stream_utils.hpp:45:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/cgi/ncbicgi.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/cgi/impl/cgi_entry_reader.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/cgi_entry_reader.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objistrasn.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objostrasnb.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistrasn.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objistrasn.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objostrasnb.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objostrasnb.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/version.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/cgi/user_agent.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/user_agent.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objistrasnb.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objostrxml.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objostrxml.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objostrxml.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistrasnb.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objistrasnb.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objistrxml.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistrxml.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objistrxml.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ .0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/cgi_util.cpp -o cgi_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/cgi_session.cpp -o cgi_session.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.so .libxcgi.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcgi.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxcgi.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxcgi.so /bin/ln -f .xcgi.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xcgi.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/cgi' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/cgi' ild/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objistrasn.cpp -o objistrasn.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objostrasnb.cpp -o objostrasnb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objistrasnb.cpp -o objistrasnb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objostrxml.cpp -o objostrxml.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objistrxml.cpp -o objistrxml.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objostrjson.cpp -o objostrjson.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objistrjson.cpp -o objistrjson.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/seIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objostrjson.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objostrjson.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objostrjson.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objistrjson.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistrjson.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/objistrjson.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serializable.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/serializable.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_safe_static.hpp:48, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/serialobject.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/serialobject.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/pathhook.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/pathhook.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/rpcbase.cpp:33:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/rpcbase_impl.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/rpcbase.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ rial/serializable.cpp -o serializable.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/serialobject.cpp -o serialobject.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/pathhook.cpp -o pathhook.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.so .libxser.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxser.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxser.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxser.so /bin/ln -f .xser.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xser.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/serial' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/serial' cd serial/datatool/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=datatool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/serial/datatool' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool TMPL=datatool -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/namespace.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/exceptions.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/statictype.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/type.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/type.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/statictype.cpp:40: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/datatool.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/datatool.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/type.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/enumtype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/enumtype.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/enumerated.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/enumtype.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/type.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/reftype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/reftype.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/reftype.cpp:43: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/serial/datatool' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/datatool.cpp -o datatool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/type.cpp -o type.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/namespace.cpp -o namespace.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/statictype.cpp -o statictype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/reftype.cpp -o reftype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/unitype.cpp -o unitype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-formatIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/unitype.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/unitype.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/exceptions.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/blocktype.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/exceptions.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/choicetype.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/exceptions.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/typestr.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/typestr.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/ptrstr.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/ptrstr.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/typestr.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/stdstr.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/stdstr.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/choicetype.cpp -o choicetype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/typestr.cpp -o typestr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/stdstr.cpp -o stdstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/classstr.cpp -o classstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/enumstr.cpp -o enumstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/datatool.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/classstr.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/exceptions.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/stlstr.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/typestr.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/enumstr.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/enumstr.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/choicestr.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/choiceptrstr.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/value.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/value.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/mcontainer.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/mcontainer.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/module.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/stlstr.cpp -o stlstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/choicestr.cpp -o choicestr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/choiceptrstr.cpp -o choiceptrstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/value.cpp -o value.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/mcontainer.cpp -o mcontainer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/module.cpp -o module.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/moduleset.cpp -o moduleset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFEIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/moduleset.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/generate.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/filecode.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/code.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/code.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/fileutil.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/exceptions.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/alexer.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/exceptions.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/aparser.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/generate.cpp -o generate.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/filecode.cpp -o filecode.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/code.cpp -o code.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/fileutil.cpp -o fileutil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/alexer.cpp -o alexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/aparser.cpp -o aparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/parser.cpp -o parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c+In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/parser.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/parser.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/alexer.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/lexer.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/lexer.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/exceptions.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/exceptions.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/comments.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/srcutil.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/dtdaux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/dtdaux.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/alexer.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/dtdlexer.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/dtdlexer.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/src/serial/datatool/lexer.cpp -o lexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/exceptions.cpp -o exceptions.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/comments.cpp -o comments.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/srcutil.cpp -o srcutil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/dtdaux.cpp -o dtdaux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/dtdlexer.cpp -o dtdlexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/dtdparser.cpp -o dtdparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/rpcgen.cpp -o rpcgen.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbiIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/exceptions.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/dtdparser.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/exceptions.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/rpcgen.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/aliasstr.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/alexer.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/dtdlexer.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/xsdlexer.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/xsdlexer.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/exceptions.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/xsdparser.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/alexer.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/dtdlexer.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/xsdlexer.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/wsdllexer.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/wsdllexer.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/exceptions.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/wsdlparser.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/exceptions.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/wsdlstr.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/traversal_pattern_match_callback.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/traversal_pattern_match_callback.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/aliasstr.cpp -o aliasstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/xsdlexer.cpp -o xsdlexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/wsdllexer.cpp -o wsdllexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/traversal_code_generator.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/traversal_node.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/traversal_merger.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/traversal_merger.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/typestr.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/aliasstr.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/traversal_node.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/traversal_spec_file_parser.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/traversal_spec_file_parser.cpp:187: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread -o datatool /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f datatool /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/serial/datatool' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/serial/datatool' cd objects/general/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objects/biblio/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objects/medline/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objects/pub/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/pub' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/biblio' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh biblio all make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/general' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh pub all make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/medline' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh general all cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh medline all Platform not defined for Linux armv7l -- please fix me Platform not defined for Linux armv7l -- please fix me Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio' Platform not defined for Linux armv7l -- please fix me make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general' /usr/bin/make[4] (Makefile.biblio.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/biblio' cd objects/seqcode/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqcode' /usr/bin/make[4] (Makefile.general.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/general' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqcode && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh seqcode all cd objects/seq/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub' /usr/bin/make[4] (Makefile.medline.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/medline' cd objects/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seq' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastdb' /usr/bin/make[4] (Makefile.pub.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/pub' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastdb && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh blastdb all cd objects/genomecoll/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/genomecoll' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh genome_collection all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seq' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/Makefile.sources builddir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -w -j --jobserver-fds=3,4 all Platform not defined for Linux armv7l -- please fix me Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastdb' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastdb' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastdb' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqcode' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqcode' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqcode' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastdb' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqcode' Platform not defined for Linux armv7l -- please fix me /usr/bin/make[4] (Makefile.seqcode.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqcode' cd objects/seqset/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.blastdb.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqset' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastdb' cd objects/scoremat/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh seqset all Platform not defined for Linux armv7l -- please fix me make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/scoremat' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/scoremat && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh scoremat all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh gencoll_client all Waiting for /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll/make_asn.lockPlatform not defined for Linux armv7l -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/scoremat' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/scoremat' Platform not defined for Linux armv7l -- please fix me make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/scoremat' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/scoremat' Platform not defined for Linux armv7l -- please fix me /usr/bin/make[4] (Makefile.scoremat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/scoremat' cd objects/seqedit/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqedit' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqedit && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh seqedit all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset' /usr/bin/make[4] (Makefile.seqset.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqset' cd objects/seqsplit/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqsplit' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqsplit && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh seqsplit all Platform not defined for Linux armv7l -- please fix me Platform not defined for Linux armv7l -- please fix me make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seq' status=0 ; \ MAKE="/usr/bin/make -w -j --jobserver-fds=3,4"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../$x ; \ (cd $d && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqalign' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqalign' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqblock' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqblock' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objectPlatform not defined for Linux armv7l -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqedit' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqedit' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqedit' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqedit' /usr/bin/make[4] (Makefile.seqedit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqedit' cd objects/submit/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/submit' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/submit && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh submit all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqsplit' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqsplit' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqsplit' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqsplit' /usr/bin/make[4] (Makefile.seqsplit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqsplit' cd objects/variation/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/variation' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/variation && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh variation all Platform not defined for Linux armv7l -- please fix me Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/submit' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/submit' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/submit' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/submit' Platform not defined for Linux armv7l -- please fix me /usr/bin/make[4] (Makefile.submit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/submit' cd objects/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blast' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh blast all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/variation' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/variation' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/variation' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/variation' /usr/bin/make[4] (Makefile.variation.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/variation' cd objects/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources Platform not defined for Linux armv7l -- please fix me s/seqloc/seqloc objects/seq/seq' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqfeat' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqfeat' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqres' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opmmake[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/id1' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id1 && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh id1 all Platform not defined for Linux armv7l -- please fix me Platform not defined for Linux armv7l -- please fix me Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/scoremat/scoremat.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqres' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqtable' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqtable' make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seq' /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id1' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id1' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh seq all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id1' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id1' /usr/bin/make[4] (Makefile.xnetblastcli.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.id1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blast' /usr/bin/make[4] (Makefile.id1cli.lib): Nothing to be done for `export-headers'. cd objects/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/id2' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id2 && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh id2 all Platform not defined for Linux armv7l -- please fix me make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/id1' cd objects/taxon1/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/taxon1' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1 && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh taxon1 all Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqblock/seqblock.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqres/seqres.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqsplit/seqsplit.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id2' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id2' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id2' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id2' /usr/bin/make[4] (Makefile.seq.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seq' cd objects/blastxml/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.id2.lib): Nothing to be done for `export-headers'. Platform not defined for Linux armv7l -- please fix me make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastxml' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh blastxml all /usr/bin/make[4] (Makefile.id2cli.lib): Nothing to be done for `export-headers'. Warning: (110.8) Found multiple [Taxon1-name] taxid._type settings; using the one from line 18 /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/id2' cd objects/blastxml2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources Platform not defined for Linux armv7l -- please fix me make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastxml2' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml2 && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh blastxml2 all /usr/bin/make[4] (Makefile.taxon1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/taxon1' cd objects/entrez2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/entrez2' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2 && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh entrez2 all File blastxml.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml' /usr/bin/make[4] (Makefile.blastxml.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastxml' cd objects/gbseq/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/gbseq' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/gbseq && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh gbseq all Platform not defined for Linux armv7l -- please fix me Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2' File blastxml2.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml2' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m blastxml2.asn -M "" -oA -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml2' Platform not defined for Linux armv7l -- please fix me make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml2' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml2' /usr/bin/make[4] (Makefile.entrez2.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.blastxml2.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastxml2' cd objects/medlars/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/gbseq' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m gbseq.asn -M "" -oA -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/gbseq' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/gbseq' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/medlars' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/gbseq' /usr/bin/make[4] (Makefile.entrez2cli.lib): Nothing to be done for `export-headers'. cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medlars && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh medlars all /usr/bin/make[4] (Makefile.gbseq.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/gbseq' cd objects/pubmed/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/pubmed' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pubmed && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh pubmed all make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/entrez2' cd objects/mla/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/mla' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh mla all Platform not defined for Linux armv7l -- please fix me Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medlars' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medlars -or objects/medlars -odi -od medlars.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medlars' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medlars' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medlars' /usr/bin/make[4] (Makefile.medlars.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/medlars' cd objects/taxon3/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pubmed' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pubmed' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pubmed' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/taxon3' Platform not defined for Linux armv7l -- please fix me make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pubmed' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3 && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh taxon3 all /usr/bin/make[4] (Makefile.pubmed.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/pubmed' cd objects/valid/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medlars/medlars.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pubmed/pubmed.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA -oc mla -or objects/mla -odi -od mla.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/valid' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valid && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh valid all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla' /usr/bin/make[4] (Makefile.mla.lib): Nothing to be done for `export-headers'. Platform not defined for Linux armv7l -- please fix me /usr/bin/make[4] (Makefile.mlacli.lib): Nothing to be done for `export-headers'. /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3' Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/mla' cd objects/valerr/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.taxon3.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/taxon3' cd objects/general/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=general UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/general' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/valerr' cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valerr && /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/new_module.sh valerr all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valid' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valid' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valid' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valid' /usr/bin/make[4] (Makefile.valid.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/valid' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general TMPL=general -w -j --jobserver-fds=3,4 all cd objects/seqcode/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqcode UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqcode' Platform not defined for Linux armv7l -- please fix me /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqcode TMPL=seqcode -w -j --jobserver-fds=3,4 all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valerr' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m valerr.asn -M "" -oA -oc valerr -or objects/valerr -odi -od valerr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valerr' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valerr' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valerr' /usr/bin/make[4] (Makefile.valerr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/valerr' cd objects/blastxml/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastxml UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastxml' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastdb' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastdb' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqcode' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqcode' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml TMPL=blastxml -w -j --jobserver-fds=3,4 all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/scoremat' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/scoremat' ./usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset' Acquired /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll/make_asn.lock for PID 31420 (make_asn) Platform not defined for Linux armv7l -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqedit' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqedit' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqsplit' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqsplit' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll' /usr/bin/make[4] (Makefile.genome_collection.lib): Nothing to be done for `export-headers'. /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/submit' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/submit' /usr/bin/make[4] (Makefile.gencoll_client.lib): Nothing to be done for `export-headers'. /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/variation' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/variation' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/genomecoll' cd objects/blastxml2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastxml2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastxml2' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/scoremat/scoremat.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j --jobserver-fds=3,4 all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id1' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id1' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqres' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqtable' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqtable' make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqblock/seqblock.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqres/seqres.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqsplit/seqsplit.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id2' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id2' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastxml/BlastOutput_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastxml/BlastOutput.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml/BlastOutput.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml/blastxml__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ File blastxml.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2' File blastxml2.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml2' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m blastxml2.asn -M "" -oA -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml2' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/gbseq' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m gbseq.asn -M "" -oA -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/gbseq' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastxml/BlastOutput_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastxml/BlastOutput.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml/BlastOutput.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml/blastxml__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqcode/Seq_code_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqcode/Seq_code_set.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqcode/Seq_code_set.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqcode/seqcode__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medlars' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medlars -or objects/medlars -odi -od medlars.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medlars' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pubmed' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pubmed' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medlars/medlars.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pubmed/pubmed.asn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA -oc mla -or objects/mla -odi -od mla.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valid' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valid' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqcode/Seq_code_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqcode/Seq_code_set.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqcode/Seq_code_set.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqcode/seqcode__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valerr' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m valerr.asn -M "" -oA -oc valerr -or objects/valerr -odi -od valerr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valerr' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ DATATOOL=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++ -opm /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastxml2/BlastOutput2_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastxml2/BlastOutput2.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml2/BlastOutput2.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml2/blastxml2__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastxml2/BlastOutput2_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastxml2/BlastOutput2.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml2/BlastOutput2.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml2/blastxml2__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqcode/Seq_code_set_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqcode/seqcode___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqcode/Seq_code_set_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqcode/seqcode___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml/BlastOutput_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml/blastxml___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml/BlastOutput_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml/blastxml___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml2/BlastOutput2_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml2/blastxml2___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml2/BlastOutput2_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml2/blastxml2___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqcode' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.so .libseqcode.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqcode.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqcode__.o seqcode___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libseqcode.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libseqcode.so /bin/ln -f .seqcode.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.seqcode.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqcode' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqcode' cd objects/entrez2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=entrez2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/entrez2' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2 TMPL=entrez2 -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastxml' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.so .libblastxml.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastxml.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastxml__.o blastxml___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libblastxml.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblastxml.so /bin/ln -f .blastxml.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.blastxml.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastxml' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastxml' cd objects/gbseq/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=gbseq UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/gbseq' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/gbseq TMPL=gbseq -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/entrez2/E2Reply_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/entrez2/E2Reply.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2/E2Reply.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2/entrez2__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/entrez2/E2Reply_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/entrez2/E2Reply.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2/E2Reply.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2/entrez2__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/gbseq/GBAltSeqData_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/gbseq/GBAltSeqData.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/gbseq/GBAltSeqData.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/gbseq/gbseq__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/gbseq/GBAltSeqData_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/gbseq/GBAltSeqData.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/gbseq/GBAltSeqData.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/gbseq/gbseq__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2/E2Reply_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2/entrez2___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/gbseq/GBAltSeqData_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/gbseq/gbseq___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2/E2Reply_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2/entrez2___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastxml2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.so .libblastxml2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastxml2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastxml2__.o blastxml2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libblastxml2.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblastxml2.so /bin/ln -f .blastxml2.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.blastxml2.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastxml2' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastxml2' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/gbseq/GBAltSeqData_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/gbseq/gbseq___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/Date_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/uoconv.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/uoconv.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/Date_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/uoconv.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/uoconv.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.so .libentrez2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libentrez2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC entrez2__.o entrez2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libentrez2.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libentrez2.so /bin/ln -f .entrez2.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.entrez2.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/entrez2' cd objects/entrez2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=entrez2cli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/entrez2' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2 TMPL=entrez2cli -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/gbseq' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.so .libgbseq.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgbseq.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC gbseq__.o gbseq___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libgbseq.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libgbseq.so /bin/ln -f .gbseq.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.gbseq.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/gbseq' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/gbseq' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/entrez2/entrez2_client_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/entrez2/entrez2_client.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2/entrez2_client.cpp:42: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/entrez2/entrez2_client_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/entrez2/entrez2_client.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2/entrez2_client.cpp:42: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/general' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general__.cpp -o general__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/general___.cpp -o general___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.so .libgeneral.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgeneral.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC general__.o general___.o uoconv.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxser -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libgeneral.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libgeneral.so /bin/ln -f .general.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.general.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/general' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/general' cd objects/biblio/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=biblio UNIX_PROJ="" sources= configurables=configurables.null cd objects/valid/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=valid UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/valid' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/biblio' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2/entrez2_client_.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio TMPL=biblio -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valid TMPL=valid -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2/entrez2_client_.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/static_set.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valid/Comment_rule.cpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valid/valid__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/biblio/Affil_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/biblio/Affil.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/Affil.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/biblio/Affil_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/biblio/Affil.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/Affil.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/misc/sequence_util_macros.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valid/Comment_rule.cpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valid/valid__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valid/valid__.cpp:2:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valid/Comment_rule.cpp: In member function ‘ncbi::objects::CComment_rule::TErrorList ncbi::objects::CComment_rule::IsValid(const ncbi::objects::CUser_object&) const’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valid/Comment_rule.cpp:290:28: warning: unused variable ‘sev’ [-Wunused-variable] CField_rule::TSeverity sev; ^~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.so .libentrez2cli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libentrez2cli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC entrez2_client.o entrez2_client_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lentrez2 -lxconnect -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libentrez2cli.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libentrez2cli.so /bin/ln -f .entrez2cli.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.entrez2cli.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/entrez2' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valid/Comment_rule_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valid/valid___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valid/Comment_rule_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valid/valid___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/Affil_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/Affil_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/biblio/citation_base.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/citation_base.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/citation_base.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/valid' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valid/valid__.cpp -o valid__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.so .libvalid.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libvalid.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC valid__.o valid___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lgeneral -lxser -lxregexp -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libvalid.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libvalid.so /bin/ln -f .valid.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.valid.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/valid' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/valid' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/biblio' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.so .libbiblio.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libbiblio.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC biblio__.o biblio___.o citation_base.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lgeneral -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libbiblio.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libbiblio.so /bin/ln -f .biblio.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.biblio.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/biblio' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/biblio' cd objects/medline/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=medline UNIX_PROJ="" sources= configurables=configurables.null cd objects/medlars/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=medlars UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/medlars' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/medline' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medlars TMPL=medlars -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline TMPL=medline -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/medline/DocRef_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/medline/DocRef.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/DocRef.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/medline__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/DocRef_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/medline___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/medline/DocRef_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/medline/DocRef.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/DocRef.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/medline__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/medlars/Medlars_entry_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/medlars/Medlars_entry.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medlars/Medlars_entry.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medlars/medlars__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/medlars/Medlars_entry_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/medlars/Medlars_entry.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medlars/Medlars_entry.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medlars/medlars__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medlars/Medlars_entry_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medlars/medlars___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/DocRef_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/medline___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medlars/Medlars_entry_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medlars/medlars___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/medlars' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.so .libmedlars.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmedlars.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC medlars__.o medlars___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lbiblio -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libmedlars.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libmedlars.so /bin/ln -f .medlars.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.medlars.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/medlars' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/medlars' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/medline' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/medline__.cpp -o medline__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.so .libmedline.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmedline.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC medline__.o medline___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lbiblio -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libmedline.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libmedline.so /bin/ln -f .medline.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.medline.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/medline' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/medline' cd objects/pub/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=pub UNIX_PROJ="" sources= configurables=configurables.null cd objects/pubmed/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=pubmed UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/pubmed' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/pub' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub TMPL=pub -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pubmed TMPL=pubmed -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub/Pub_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub/pub___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/pubmed/Pubmed_entry_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/pubmed/Pubmed_entry.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pubmed/Pubmed_entry.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pubmed/pubmed__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pubmed/Pubmed_entry_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pubmed/pubmed___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub/Pub_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub/pub___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/pubmed/Pubmed_entry_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/pubmed/Pubmed_entry.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pubmed/Pubmed_entry.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pubmed/pubmed__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/pub/Pub_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/pub/Pub.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub/Pub.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub/pub__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pubmed/Pubmed_entry_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pubmed/pubmed___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/pub/Pub_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/pub/Pub.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub/Pub.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub/pub__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/pubmed' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.so .libpubmed.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libpubmed.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC pubmed__.o pubmed___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lmedline -lbiblio -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libpubmed.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libpubmed.so /bin/ln -f .pubmed.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.pubmed.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/pubmed' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/pubmed' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/pub' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub/pub__.cpp -o pub__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.so .libpub.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libpub.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC pub__.o pub___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lmedline -lbiblio -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libpub.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libpub.so /bin/ln -f .pub.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.pub.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/pub' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/pub' cd objects/seq/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seq UNIX_PROJ="" sources= configurables=configurables.null cd objects/mla/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=mla UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seq' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/mla' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq TMPL=seq -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla TMPL=mla -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/Align_def.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_diag.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqalign/Dense_diag.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:2, from seqalign__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqblock/EMBL_block_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqblock/EMBL_block.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqblock/EMBL_block.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqblock/seqblock__.cpp:2, from seqblock__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/mla/Error_val_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/mla/Error_val.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla/Error_val.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla/mla__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_diag.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqalign/Dense_diag.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:2, from seqalign__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqblock/EMBL_block_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqblock/EMBL_block.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqblock/EMBL_block.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqblock/seqblock__.cpp:2, from seqblock__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/Align_def.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/mla/Error_val_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/mla/Error_val.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla/Error_val.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla/mla__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla/Error_val_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla/mla___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function ‘void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1381:69: warning: ‘void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations] SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:3:0, from seqalign__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909:6: note: declared here void CDense_seg::RemapToLoc(TDim row, const CSeq_loc& loc, ^~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1385:62: warning: ‘void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations] (*std_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:42:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Std_seg.hpp:79:26: note: declared here NCBI_DEPRECATED void RemapToLoc(TDim row, ^~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1390:68: warning: ‘void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations] (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1364:6: note: declared here void CSeq_align::RemapToLoc(TDim row, ^~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla/Error_val_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla/mla___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30:0, from seqfeat__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp: In static member function ‘static bool ncbi::objects::CPCRPrimerSeq::Fixi(std::__cxx11::string&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp:249:72: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] pos = NStr::Find(seq, "i", pos, NPOS, NStr::eFirst, NStr::eCase); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:42:0, from seqfeat__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function ‘ncbi::CTempString ncbi::objects::s_AaName(int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (idx > 0 && idx < ArraySize(sc_TrnaList)) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/mla' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla/mla__.cpp -o mla__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.so .libmla.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmla.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC mla__.o mla___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lmedlars -lpub -lpubmed -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libmla.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libmla.so /bin/ln -f .mla.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.mla.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/mla' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/mla' cd objects/mla/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=mlacli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/mla' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla TMPL=mlacli -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static size_t ncbi::objects::CSubSource::CheckDateFormat(const string&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:457:14: warning: unused variable ‘first_bad’ [-Wunused-variable] bool first_bad = false; ^~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:458:14: warning: unused variable ‘first_future’ [-Wunused-variable] bool first_future = false; ^~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:459:14: warning: unused variable ‘second_bad’ [-Wunused-variable] bool second_bad = false; ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:460:14: warning: unused variable ‘second_future’ [-Wunused-variable] bool second_future = false; ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static std::__cxx11::string ncbi::objects::CSubSource::GetCollectionDateProblem(const string&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:509:10: warning: unused variable ‘bad_format’ [-Wunused-variable] bool bad_format = false; ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:510:10: warning: unused variable ‘in_future’ [-Wunused-variable] bool in_future = false; ^~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static std::vector > ncbi::objects::CSubSource::x_GetDateTokens(const string&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:739:12: warning: unused variable ‘i’ [-Wunused-variable] size_t i; ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static std::__cxx11::string ncbi::objects::CSubSource::ValidateLatLonCountry(const string&, std::__cxx11::string&, bool, ncbi::objects::CSubSource::ELatLonCountryErr&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:1985:67: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(lat_lon, ",", 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In function ‘bool ncbi::objects::s_ContainsWholeWord(const string&, const string&, ncbi::NStr::ECase)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:3554:74: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(test, word, 0, NPOS, NStr::eFirst, case_sense); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:3560:77: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] pos = NStr::Find(test, word, pos + 1, NPOS, NStr::eFirst, case_sense); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/mla/mla_client_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/mla/mla_client.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla/mla_client.cpp:41: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/mla/mla_client_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/mla/mla_client.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla/mla_client.cpp:41: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla/mla_client_.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla/mla_client_.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqloc/seqloc__.cpp:10:0, from seqloc__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqloc/Seq_id.cpp: In static member function ‘static ncbi::SIZE_TYPE ncbi::objects::CSeq_id::ParseIDs(ncbi::objects::CBioseq_Base::TId&, const ncbi::CTempString&, ncbi::objects::CSeq_id::TParseFlags)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqloc/Seq_id.cpp:1859:60: warning: ‘static std::__cxx11::list& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Split(ss, "|", fasta_pieces, NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2516:31: note: declared here static list& Split( ^~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/mla' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla/mla_client.cpp -o mla_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.so .libmlacli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmlacli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC mla_client.o mla_client_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lmla -lxconnect -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libmlacli.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libmlacli.so /bin/ln -f .mlacli.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.mlacli.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/mla' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/mla' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqres/Byte_graph_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqres/Byte_graph.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqres/Byte_graph.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqres/seqres__.cpp:2, from seqres__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqres/Byte_graph_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqres/Byte_graph.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqres/Byte_graph.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqres/seqres__.cpp:2, from seqres__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seq' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq__.cpp -o seq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include seqalign__.cpp -o seqalign__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include seqblock__.cpp -o seqblock__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include seqfeat__.cpp -o seqfeat__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include seqloc__.cpp -o seqloc__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include seqres__.cpp -o seqres__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-pIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqtable/BVector_data_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqtable/BVector_data.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqtable/BVector_data.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqtable/seqtable__.cpp:2, from seqtable__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqtable/BVector_data_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqtable/BVector_data.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqtable/BVector_data.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqtable/seqtable__.cpp:2, from seqtable__.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/Align_def_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/Align_def_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqalign/seqalign___.cpp:2, from seqalign___.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqalign/seqalign___.cpp:2, from seqalign___.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqblock/seqblock___.cpp:2, from seqblock___.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqblock/seqblock___.cpp:2, from seqblock___.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, from seqfeat___.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, from seqfeat___.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqloc/seqloc___.cpp:2, from seqloc___.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqloc/seqloc___.cpp:2, from seqloc___.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ rotector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include seqtable__.cpp -o seqtable__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq___.cpp -o seq___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include seqalign___.cpp -o seqalign___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include seqblock___.cpp -o seqblock___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include seqfeat___.cpp -o seqfeat___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include seqloc___.cpp -o seqloc___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqres/seqres___.cpp:2, from seqres___.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqres/seqres___.cpp:2, from seqres___.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqtable/seqtable___.cpp:2, from seqtable___.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/../seqtable/seqtable___.cpp:2, from seqtable___.cpp:1: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_data_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_data.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seqport_util.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seqport_util.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_data_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_data.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seqport_util.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seqport_util.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_id_tree.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_id_handle.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_id_handle.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_id_tree.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_id_tree.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_mapper.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_id_mapper.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_mapper.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_id_mapper.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include seqres___.cpp -o seqres___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include seqtable___.cpp -o seqtable___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_loc_mapper_base.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_loc_mapper_base.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_loc_mapper_base.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_loc_mapper_base.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_align_mapper_base.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_align_mapper_base.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_align_mapper_base.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_align_mapper_base.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function ‘void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef&) const’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_align_mapper_base.cpp:1505:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( row_n == p_row ) { ~~~~~~^~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seqlocinfo.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seqlocinfo.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seqlocinfo.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seqlocinfo.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/sofa_type.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/sofa_map.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/sofa_type.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/sofa_map.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_loc_from_string.cpp:35:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_loc_from_string.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_loc_from_string.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.so .libseq.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseq.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lseqcode -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libseq.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libseq.so /bin/ln -f .seq.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.seq.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seq' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seq' cd objects/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastdb UNIX_PROJ="" sources= configurables=configurables.null cd objects/genomecoll/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=genome_collection UNIX_PROJ="" sources= configurables=configurables.null cd objects/seqset/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqset UNIX_PROJ="" sources= configurables=configurables.null cd objects/variation/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=variation UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/genomecoll' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastdb' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/variation' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqset' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll TMPL=genome_collection -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset TMPL=seqset -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/variation TMPL=variation -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastdb TMPL=blastdb -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialdef.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/typeref.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serial.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/Bioseq_set.cpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/seqset__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/variation/VariantPlacement_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/variation/VariantPlacement.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/variation/VariantPlacement.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/variation/variation__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/Bioseq_set.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/seqset__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastdb/Blast_db_mask_info_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastdb/Blast_db_mask_info.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastdb/Blast_db_mask_info.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastdb/blastdb__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastdb/Blast_db_mask_info_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastdb/Blast_db_mask_info.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastdb/Blast_db_mask_info.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastdb/blastdb__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/variation/VariantPlacement_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/variation/VariantPlacement.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/variation/VariantPlacement.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/variation/variation__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/genomecoll/GC_Assemblies_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/genomecoll/GC_Assemblies.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll/GC_Assemblies.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll/genome_collection__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/genomecoll/GC_Assemblies_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/genomecoll/GC_Assemblies.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll/GC_Assemblies.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll/genome_collection__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/variation/VariantPlacement_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/variation/variation___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/variation/VariantPlacement_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/variation/variation___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastdb/blastdb___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastdb/blastdb___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.so .libblastdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastdb__.o blastdb___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libblastdb.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblastdb.so /bin/ln -f .blastdb.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.blastdb.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastdb' cd objects/taxon1/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=taxon1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/taxon1' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1 TMPL=taxon1 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/Bioseq_set_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/seqset___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/Bioseq_set_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/seqset___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/Taxon1_data.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/taxon1__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/Taxon1_data.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/taxon1__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll/genome_collection___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/variation' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/variation/variation__.cpp -o variation__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.so .libvariation.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libvariation.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC variation__.o variation___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libvariation.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libvariation.so /bin/ln -f .variation.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.variation.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/variation' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/variation' cd objects/taxon3/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=taxon3 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/taxon3' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll/genome_collection___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3 TMPL=taxon3 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/gb_release_file.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/gb_release_file.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon3/SequenceOfInt_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon3/SequenceOfInt.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3/SequenceOfInt.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3/taxon3__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/gb_release_file.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/gb_release_file.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/Taxon1_data_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/taxon1___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon3/SequenceOfInt_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon3/SequenceOfInt.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3/SequenceOfInt.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3/taxon3__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/Taxon1_data_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/taxon1___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqset' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.so .libseqset.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqset.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqset__.o seqset___.o gb_release_file.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libseqset.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libseqset.so /bin/ln -f .seqset.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.seqset.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqset' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqset' cd objects/scoremat/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=scoremat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/scoremat' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/scoremat TMPL=scoremat -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3/SequenceOfInt_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3/taxon3___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3/SequenceOfInt_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3/taxon3___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/scoremat/BlockProperty_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/scoremat/BlockProperty.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/scoremat/BlockProperty.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/scoremat/scoremat__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/scoremat/BlockProperty_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/scoremat/BlockProperty.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/scoremat/BlockProperty.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/scoremat/scoremat__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/taxon1.cpp:34:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/taxon1.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/scoremat/BlockProperty_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/scoremat/scoremat___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/scoremat/BlockProperty_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/scoremat/scoremat___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/genomecoll' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.so .libgenome_collection.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgenome_collection.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC genome_collection__.o genome_collection___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libgenome_collection.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libgenome_collection.so /bin/ln -f .genome_collection.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.genome_collection.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/genomecoll' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/genomecoll' cd objects/seqedit/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqedit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqedit' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqedit TMPL=seqedit -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3/taxon3.cpp:34:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon3/SequenceOfInt_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon3/SequenceOfInt.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon3/taxon3__.hpp:1, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon3/taxon3.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3/taxon3.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqedit/SeqEdit_Cmd_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqedit/SeqEdit_Cmd.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqedit/SeqEdit_Cmd.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqedit/seqedit__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqedit/SeqEdit_Cmd_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqedit/SeqEdit_Cmd.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqedit/SeqEdit_Cmd.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqedit/seqedit__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqedit/seqedit___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqedit/seqedit___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/scoremat' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.so .libscoremat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libscoremat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC scoremat__.o scoremat___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libscoremat.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libscoremat.so /bin/ln -f .scoremat.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.scoremat.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/scoremat' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/scoremat' cd objects/seqsplit/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqsplit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqsplit' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqsplit TMPL=seqsplit -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqsplit/ID2S_Bioseq_Ids_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqsplit/ID2S_Bioseq_Ids.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqsplit/ID2S_Bioseq_Ids.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqsplit/seqsplit__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3/cached_taxon3.cpp:34:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqsplit/ID2S_Bioseq_Ids_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqsplit/ID2S_Bioseq_Ids.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqsplit/ID2S_Bioseq_Ids.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqsplit/seqsplit__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon3/SequenceOfInt_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon3/SequenceOfInt.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon3/taxon3__.hpp:1, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon3/cached_taxon3.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3/cached_taxon3.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqsplit/seqsplit___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqsplit/seqsplit___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialdef.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/typeref.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serial.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/cache.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistrasn.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/cache.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/taxon3' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon3/cached_taxon3.cpp -o cached_taxon3.o /bin/rm -f libtaxon3.so .libtaxon3.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtaxon3.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC taxon3__.o taxon3___.o taxon3.o cached_taxon3.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxconnect -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libtaxon3.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libtaxon3.so /bin/ln -f .taxon3.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.taxon3.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/taxon3' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/taxon3' cd objects/submit/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=submit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/submit' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/submit TMPL=submit -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/submit/Contact_info_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/submit/Contact_info.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/submit/Contact_info.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/submit/submit__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/submit/Contact_info_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/submit/Contact_info.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/submit/Contact_info.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/submit/submit__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqedit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.so .libseqedit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqedit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqedit__.o seqedit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libseqedit.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libseqedit.so /bin/ln -f .seqedit.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.seqedit.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqedit' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqedit' cd objects/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blast' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast TMPL=blast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/submit/Contact_info_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/submit/submit___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/submit/Contact_info_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/submit/submit___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blas_get_searc_resul_reply_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blas_get_searc_resul_reply.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast/Blas_get_searc_resul_reply.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast/blast__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blas_get_searc_resul_reply_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blas_get_searc_resul_reply.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast/Blas_get_searc_resul_reply.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast/blast__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/utils.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/utils.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqsplit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.so .libseqsplit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqsplit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqsplit__.o seqsplit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libseqsplit.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libseqsplit.so /bin/ln -f .seqsplit.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.seqsplit.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqsplit' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqsplit' cd objects/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=id1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/id1' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id1 TMPL=id1 -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/submit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/submit/submit__.cpp -o submit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.so .libsubmit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libsubmit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC submit__.o submit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lseqset -lseq -lbiblio -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libsubmit.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libsubmit.so /bin/ln -f .submit.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.submit.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/submit' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/submit' cd objects/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=id2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/id2' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id2 TMPL=id2 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast/blast___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast/blast___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/id1/Entry_complexities_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/id1/Entry_complexities.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id1/Entry_complexities.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id1/id1__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/id1/Entry_complexities_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/id1/Entry_complexities.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id1/Entry_complexities.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id1/id1__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/id2/ID2S_Reply_Get_Chunk_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/id2/ID2S_Reply_Get_Chunk.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id2/ID2S_Reply_Get_Chunk.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id2/id2__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/id2/ID2S_Reply_Get_Chunk_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/id2/ID2S_Reply_Get_Chunk.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id2/ID2S_Reply_Get_Chunk.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id2/id2__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id1/Entry_complexities_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id1/id1___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id1/Entry_complexities_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id1/id1___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/ctreecont.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/ctreecont.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/ctreecont.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/ctreecont.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id2/id2___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id2/id2___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/id1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id1/id1__.cpp -o id1__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.so .libid1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC id1__.o id1___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libid1.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libid1.so /bin/ln -f .id1.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.id1.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/id1' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/id1' cd objects/valerr/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=valerr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/valerr' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valerr TMPL=valerr -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/taxon1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/cache.cpp -o cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/utils.cpp -o utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.so .libtaxon1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtaxon1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxconnect -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libtaxon1.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libtaxon1.so /bin/ln -f .taxon1.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.taxon1.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/taxon1' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/taxon1' cd objmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=objmgr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr TMPL=objmgr -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/valerr/ValidErrItem.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valerr/ValidErrItem.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valerr/valerr__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/valerr/ValidErrItem.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valerr/ValidErrItem.cpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valerr/valerr__.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/objmgr_exception.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_table_setters.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_table_setters.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_table_setters.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valerr/ValidErrItem_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valerr/valerr___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valerr/ValidErrItem_.cpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valerr/valerr___.cpp:2: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/id2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id2/id2__.cpp -o id2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.so .libid2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC id2__.o id2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lseqsplit -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libid2.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libid2.so /bin/ln -f .id2.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.id2.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/id2' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/id2' cd objtools/readers/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xobjread UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/readers' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers TMPL=xobjread -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/valerr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.so .libvalerr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libvalerr.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC valerr__.o valerr___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libvalerr.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libvalerr.so /bin/ln -f .valerr.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.valerr.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/valerr' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/valerr' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/read_util.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/read_util.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_table_info.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_table_info.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_annot_info.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_annot_info.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_table_info.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_table_info.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_annot_info.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_annot_info.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/NCBI_Blast4_module.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/names.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast/names.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/NCBI_Blast4_module.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/names.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast/names.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/format_guess_ex.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/format_guess_ex.cpp:45: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_table_info.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/table_field.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_table_info.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/table_field.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/acc_pattern.cpp:43: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast/blast__.cpp -o blast__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast/blast___.cpp -o blast___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.so .libxnetblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxnetblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast__.o blast___.o names.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lscoremat -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxnetblast.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxnetblast.so /bin/ln -f .xnetblast.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xnetblast.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blast' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blast' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_map.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_map_switch.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_map_switch.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_map.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_map_switch.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_map_switch.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/agp_read.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_read.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/agp_read.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_read.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_read.cpp: In function ‘ncbi::CRef ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_read.cpp:58:74: warning: ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’ is deprecated [-Wdeprecated-declarations] AgpRead(is, entries, component_id_rule, set_gap_data, component_types); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_read.cpp:33:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_read.cpp: In function ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_read.cpp:74:74: warning: ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’ is deprecated [-Wdeprecated-declarations] AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_read.cpp:33:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_read.cpp: In function ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_read.cpp:123:42: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", fields); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/agp_read.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_read.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/agp_seq_entry.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_seq_entry.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/agp_seq_entry.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_seq_entry.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/readers' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/read_util.cpp -o read_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_validate_reaIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_util.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/snp_annot_info.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/snp_annot_info.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/snp_annot_info.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/agp_validate_reader.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_validate_reader.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_validate_reader.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/annot_collector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_types_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_types_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/aln_reader.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/aln_reader.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/aln_reader.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/aln_reader.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/table_field.cpp -o table_field.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o /usr/bin/g++ -std=gnu+In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_name.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_selector.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_selector.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_selector.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/bed_reader.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_loc_cvt.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_loc_cvt.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_loc_cvt.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_loc_cvt.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/bed_reader.cpp:44: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/bed_reader.cpp: In member function ‘virtual ncbi::CRef ncbi::objects::CBedReader::ReadSeqAnnot(ncbi::ILineReader&, ncbi::objects::ILineErrorListener*)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/bed_reader.cpp:148:34: warning: unused variable ‘tbl’ [-Wunused-variable] CSeq_annot::C_Data::TFtable& tbl = annot->SetData().SetFtable(); ^~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/cigar.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/cigar.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/cigar.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/cigar.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/bed_reader.cpp: In member function ‘void ncbi::objects::CBedReader::xSetFeatureColorFromScore(ncbi::CRef, const string&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/bed_reader.cpp:1266:20: warning: ‘score’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (score < 0 || 1000 < score) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/fasta.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/fasta.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/fasta.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_descr.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_descr_ci.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_descr_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_descr.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_descr_ci.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_descr_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/fasta_aln_builder.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/fasta_aln_builder.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/fasta_aln_builder.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/fasta.cpp: In member function ‘virtual bool ncbi::objects::CFastaReader::ParseGapLine(const TStr&, ncbi::objects::ILineErrorListener*)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/fasta.cpp:1285:35: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/fasta.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/fasta.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2685:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/feat_ci.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/feat_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/range.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/getfeature.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/feat_ci.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/feat_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/featuredump.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/getfeature.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/getfeature.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/annot_collector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/graph_ci.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/graph_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/graph_ci.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/graph_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/gff_reader.hpp:48, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff_reader.cpp: In member function ‘virtual bool ncbi::objects::CGFFReader::x_ParseStructuredComment(const TStr&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff_reader.cpp:408:55: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "# \t", v, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2685:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff_reader.cpp: In member function ‘virtual ncbi::CRef ncbi::objects::CGFFReader::x_ParseFeatureInterval(const TStr&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff_reader.cpp:479:55: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", v, NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2685:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff_reader.cpp:482:58: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, " \t", v, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2685:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff_reader.cpp: In member function ‘virtual void ncbi::objects::CGFFReader::x_ParseV3Attributes(ncbi::objects::CGFFReader::SRecord&, const TStrVec&, ncbi::SIZE_TYPE&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff_reader.cpp:930:53: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(v[i], ";", v2, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff_reader.cpp:938:45: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(values, ",", vals); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/annot_object.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_object.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/annot_object.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_object.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/annot_object_index.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_object_index.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/annot_object.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/annot_object_index.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_object_index.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ +11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_selector.cpp -o annot_selector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/feat_ci.cpp -o feat_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/graph_ci.cpp -o graph_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_object.cpp -o annot_object.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformader.cpp -o agp_validate_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/cigar.cpp -o cigar.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/fasta.cpp -o fasta.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff_reader.cpp -o gff_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/annot_collector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_ci.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_ci.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/track_data.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info_object.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/data_source.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/tse_info.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/data_source.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/tse_info.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/reader_data.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info_object.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/tse_info_object.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/tse_info_object.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/microarray_reader.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/microarray_reader.cpp:44: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/range.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/phrap.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/phrap.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info_object.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_entry_info.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_entry_info.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/reader_base.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/reader_base.cpp:44: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/bioseq_base_info.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_base_info.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/bioseq_base_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_base_info.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/reader_base.cpp: In member function ‘virtual bool ncbi::objects::CReaderBase::xIsTrackTerminator(const ncbi::CTempString&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/reader_base.cpp:672:41: warning: ‘static ncbi::CTempString ncbi::NStr::TruncateSpaces(ncbi::CTempString, ncbi::NStr::ETrunc)’ is deprecated [-Wdeprecated-declarations] return (NStr::TruncateSpaces(strLine) == "###"); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/reader_base.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2212:24: note: declared here static CTempString TruncateSpaces(const CTempString str, ^~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info_object.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_set_info.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_set_info.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/bioseq_base_info.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/bioseq_info.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_info.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/bioseq_base_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/bioseq_info.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_info.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ t -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_ci.cpp -o annot_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/tse_info.cpp -o tse_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/readfeat.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/readfeat.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info_object.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/data_source.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/data_source.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/data_source.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/data_source.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/rm_reader.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/rm_reader.cpp:43: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/readfeat.cpp: In function ‘ncbi::CRef ncbi::objects::{anonymous}::GetBestId(const TId&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/readfeat.cpp:146:29: warning: large integer implicitly truncated to unsigned type [-Woverflow] Uint1 best_weight = UINT_MAX; ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/readfeat.cpp: In constructor ‘ncbi::objects::CFeature_table_reader_imp::CFeature_table_reader_imp(ncbi::ILineReader*, unsigned int, ncbi::objects::ILineErrorListener*)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/readfeat.cpp:433:18: warning: ‘ncbi::objects::CFeature_table_reader_imp::m_reader’ will be initialized after [-Wreorder] ILineReader* m_reader; ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/readfeat.cpp:430:18: warning: ‘unsigned int ncbi::objects::CFeature_table_reader_imp::m_line_num’ [-Wreorder] unsigned int m_line_num; ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/readfeat.cpp:784:1: warning: when initialized here [-Wreorder] CFeature_table_reader_imp::CFeature_table_reader_imp(ILineReader* reader, unsigned int line_num, ILineErrorListener* pMessageListener) ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/rm_reader.cpp: In member function ‘virtual bool ncbi::objects::CRepeatMaskerReader::ParseRecord(const string&, ncbi::objects::SRepeatRegion&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/rm_reader.cpp:893:43: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] if ( NStr::Split( line, " \t", values ).size() < MIN_VALUE_COUNT ) { ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/rm_reader.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/priority.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/priority.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/scope_info.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/priority.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/track_data.cpp -o track_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/phrap.cpp -o phrap.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/reader_base.cpp -o reader_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/readfeat.cpp -o readfeat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/wiggle_reader.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Object_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Object_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/wiggle_reader.cpp:41: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/prefetch_impl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/prefetch_impl.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/prefetch_impl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/prefetch_impl.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/objmgr_exception.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/prefetch_manager.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff3_sofa.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/gff3_sofa.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff3_sofa.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/prefetch_manager_impl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/prefetch_manager_impl.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff3_reader.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gtf_reader.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/prefetch_manager.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/prefetch_actions.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/prefetch_actions.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff3_reader.cpp:44: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gtf_reader.cpp:44: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/prefetch_actions.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/prefetch_actions.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/scope.cpp:41: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/scope.cpp:41: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff3_reader.cpp: In member function ‘bool ncbi::objects::CGff3Reader::xVerifyExonLocation(const string&, const ncbi::objects::CGff2Record&, ncbi::objects::ILineErrorListener*)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff3_reader.cpp:271:10: warning: unused variable ‘failed’ [-Wunused-variable] bool failed = (containedInt.GetFrom() < containingInt.GetFrom()) || ^~~~~~ D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/data_source.cpp -o data_source.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/priority.cpp -o priority.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/scope.cpp -o scope.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/heap_scope.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/heap_scope.cpp:41: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/heap_scope.cpp:42: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff2_data.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Object_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Object_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff2_data.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff2_reader.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gvf_reader.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff2_reader.cpp:44: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff2_data.cpp: In static member function ‘static void ncbi::objects::CGff2Record::TokenizeGFF(std::vector&, const ncbi::CTempStringEx&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff2_data.cpp:220:68: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::TSplitFlags, std::vector*, ncbi::CTempString_Storage*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(in_line, "\t", columns, NStr::fSplit_MergeDelims); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff2_data.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2675:28: note: declared here vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gvf_reader.cpp:44: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff2_reader.cpp: In member function ‘bool ncbi::objects::CGff2Reader::x_FeatureTrimQualifiers(const ncbi::objects::CGff2Record&, ncbi::CRef)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff2_reader.cpp:832:38: warning: typedef ‘TAttrs’ locally defined but not used [-Wunused-local-typedefs] typedef CGff2Record::TAttributes TAttrs; ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/scope_impl.cpp:41: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/scope_impl.cpp:41: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff3_sofa.cpp -o gff3_sofa.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/best_feat_finder.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/best_feat_finder.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/vcf_reader.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/Seq_feat_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/Seq_feat.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/best_feat_finder.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/vcf_reader.cpp:44: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/source_mod_parser.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/source_mod_parser.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/source_mod_parser.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/source_mod_parser.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/fasta_exception.cpp:35:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/fasta_exception.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/fasta_exception.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_converter.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/agp_seq_entry.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/agp_converter.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_converter.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_converter.cpp: In member function ‘void ncbi::CAgpConverter::LoadChromosomeMap(ncbi::CNcbiIstream&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_converter.cpp:143:44: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(line, " \t", split_line); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_converter.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/ucscregion_reader.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/scope_info.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/scope_info.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/scope_info.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/scope_info.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/ucscregion_reader.cpp:44: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/message_listener.cpp -o message_listener.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-tIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/message_listener.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/message_listener.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/line_error.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/line_error.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/ucscregion_reader.cpp: In member function ‘void ncbi::objects::CUCSCRegionReader::xSmartFieldSplit(std::vector >&, ncbi::CTempString)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/ucscregion_reader.cpp:184:62: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, " \t.-:", fields, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/ucscregion_reader.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ cd objects/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xnetblastcli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blast' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast TMPL=xnetblastcli -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/blastclient_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/blastclient.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast/blastclient.cpp:41: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/blastclient_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/blastclient.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast/blastclient.cpp:41: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast/blastclient_.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast/blastclient_.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast_unit_test_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w -j --jobserver-fds=3,4 all ime -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/readers/line_error.cpp -o line_error.o /bin/rm -f libxobjread.so .libxobjread.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjread.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC read_util.o format_guess_ex.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o aln_reader.o bed_reader.o cigar.o fasta.o fasta_aln_builder.o getfeature.o gff_reader.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_sofa.o gff3_reader.o gtf_reader.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o message_listener.o line_error.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lsubmit -lseqset -lseq -lseqcode -lsequtil -lgeneral -lcreaders -lxutil -lpub -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxobjread.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxobjread.so /bin/ln -f .xobjread.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xobjread.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/readers' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/readers' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqalign_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast/blastclient.cpp -o blastclient.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.so .libxnetblastcli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxnetblastcli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastclient.o blastclient_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxnetblast -lxconnect -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxnetblastcli.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxnetblastcli.so /bin/ln -f .xnetblastcli.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xnetblastcli.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blast' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast_app_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast TMPL=blast_app_util -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/range.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/seqalign_cmp.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/seqalign_cmp.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/object_manager.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/blast_app_util.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/blast_app_util.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/blast_app_util.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/blast_app_util.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/range.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp -o seqalign_cmp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp -o seqalign_set_convert.o /bin/rm -f libseqalign_util.a .libseqalign_util.a.stamp ar cr libseqalign_util.a seqalign_cmp.o seqalign_set_convert.o /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqalign_util.a /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libseqalign_util.a /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libseqalign_util.a /bin/ln -f .seqalign_util.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.seqalign_util.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd objtools/blast/services/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast_services UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/services' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/services TMPL=blast_services -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/services/blast_services.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/services/blast_services.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/tse_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/tse_handle.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/tse_handle.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/tse_handle.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/services' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.so .libblast_services.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblast_services.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast_services.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxnetblastcli -lxnetblast -lxser -lxconnect -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libblast_services.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast_services.so /bin/ln -f .blast_services.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.blast_services.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/services' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/services' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp: In function ‘Uint4 TestUtil::EndianIndependentBufferHash(const char*, Uint4, Uint4, Uint4)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:257:44: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] Uint4 end_value = *((int *) & end_bytes); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_map.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_map.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_map.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_map.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp -o test_objmgr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp -o blast_test_util.o /bin/rm -f libblast_unit_test_util.a .libblast_unit_test_util.a.stamp ar cr libblast_unit_test_util.a test_objmgr.o blast_test_util.o /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_unit_test_util.a /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libblast_unit_test_util.a /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast_unit_test_util.a /bin/ln -f .blast_unit_test_util.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.blast_unit_test_util.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_map.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_map_ci.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_map_ci.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_map.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_map_ci.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_map_ci.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libblast_app_util.a /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.blast_app_util.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_entry_ci.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_entry_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Bioseq_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Bioseq_set.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_set_handle.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_entry_ci.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_entry_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_annot_ci.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_annot_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_annot_ci.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_annot_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ .0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/heap_scope.cpp -o heap_scope.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/scope_impl.cpp -o scope_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/scope_info.cpp -o scope_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/tse_handle.cpp -o tse_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_map.cpp -o seq_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopeIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/annot_collector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_table_ci.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_table_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_entry_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_entry_handle.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_table_ci.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_table_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_entry_handle.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_set_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_set_handle.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Bioseq_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Bioseq_set.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_set_handle.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_set_handle.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_handle.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_handle.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_annot_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_annot_handle.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/tse_handle.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_annot_handle.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_annot_handle.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/align_ci.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/align_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/align_ci.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/align_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/data_loader.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/data_loader.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/data_loader.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ nmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_handle.cpp -o bioseq_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_annot_handle.cpp -o seq_annot_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/align_ci.cpp -o align_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/data_loader.cpp -o data_loader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-securIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/handle_range.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/handle_range.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/handle_range.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/handle_range.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/objmgr_exception.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/handle_range.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/handle_range_map.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/handle_range_map.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/handle_range.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/handle_range_map.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/handle_range_map.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/object_manager.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/object_manager.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_vector.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_vector.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/object_manager.cpp:40: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_vector_ci.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_vector_ci.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_descr.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_descr_ci.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seqdesc_ci.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seqdesc_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_descr.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_descr_ci.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seqdesc_ci.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seqdesc_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ ity -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/handle_range.cpp -o handle_range.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/objmgr_exception.cpp -o objmgr_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/handle_range_map.cpp -o handle_range_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/object_manager.cpp -o object_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_vector.cpp -o seq_vector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_vector_ci.cpp -o seq_vector_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seqdesc_ci.cpp -o seqdesc_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_split_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/tse_split_info.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_split_info.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/tse_split_info.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_ci.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_ci.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_chunk_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/tse_chunk_info.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_chunk_info.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/tse_chunk_info.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_type_index.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/annot_type_index.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_type_index.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_loc_mapper.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_loc_mapper.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_align_mapper.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_align_mapper.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_loc_mapper.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_loc_mapper.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_align_mapper.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_align_mapper.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/annot_collector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_collector.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_collector.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ ANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_collector.cpp -o annot_collector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/data_loader_factory.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/data_loader_factory.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/data_loader_factory.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/data_loader_factory.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/mapped_feat.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/mapped_feat.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_feat_handle.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/mapped_feat.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/mapped_feat.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_feat_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_feat_handle.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_feat_handle.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_feat_handle.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_graph_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_graph_handle.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqres/Seq_graph_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqres/Seq_graph.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_graph_handle.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_graph_handle.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_align_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_align_handle.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_align_handle.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_align_handle.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info_object.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/tse_assigner.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/tse_assigner.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ .5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/scope_transaction_impl.cpp In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/scope_transaction.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/scope_transaction.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/scope_impl.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/scope_transaction_impl.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/scope_transaction_impl.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/bioseq_edit_commands.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_edit_commands.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/bioseq_edit_commands.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_edit_commands.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/edit_commands_impl.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/edit_commands_impl.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/edit_commands_impl.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_entry_edit_commands.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_entry_edit_commands.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/edit_saver.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/edit_saver.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/unsupp_editsaver.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/unsupp_editsaver.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/edit_saver.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/edit_saver.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/edit_saver.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/unsupp_editsaver.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/unsupp_editsaver.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -o scope_transaction_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/edit_saver.cpp -o edit_saver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /usr/bin/g++ -std=gnu++11 -c -WallIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/edits_db_saver.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/edits_db_saver.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/edits_db_engine.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/edits_db_engine.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/annot_finder.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_finder.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/edit_saver.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/unsupp_editsaver.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/edits_db_saver.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/edits_db_saver.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_finder.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/gc_assembly_parser.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/gc_assembly_parser.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/gc_assembly_parser.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/gc_assembly_parser.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/split_parser.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split_parser.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split_parser.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_id_sort.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_id_sort.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/impl/seq_id_sort.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_id_sort.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split_parser.cpp -o split_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.so .libxobjmgr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjmgr.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxobjmgr.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxobjmgr.so /bin/ln -f .xobjmgr.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xobjmgr.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr' cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqdb UNIX_PROJ="" sources= configurables=configurables.null cd objmgr/util/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null cd algo/dustmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgodustmask UNIX_PROJ="" sources= configurables=configurables.null cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr/util' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/dustmask' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util TMPL=util -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/dustmask TMPL=xalgodustmask -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/dustmask/symdust.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdb.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdb.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/weight.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/weight.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/weight.cpp: In function ‘double ncbi::objects::GetProteinWeight(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const ncbi::objects::CSeq_loc*, ncbi::objects::TGetProteinWeight)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/weight.cpp:121:12: warning: enumeration value ‘eProcessed_propeptide’ not handled in switch [-Wswitch] switch (prot.GetProcessed()) { ^ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/dustmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.so .libxalgodustmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgodustmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC symdust.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxalgodustmask.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxalgodustmask.so /bin/ln -f .xalgodustmask.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xalgodustmask.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/dustmask' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/dustmask' cd algo/segmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgosegmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/segmask' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/segmask TMPL=xalgosegmask -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/segmask/segmask.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/segmask/segmask.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/segmask/segmask.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/segmask/segmask.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/sequence.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/sequence.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/segmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.so .libxalgosegmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgosegmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC segmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast -lxobjmgr -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxalgosegmask.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxalgosegmask.so /bin/ln -f .xalgosegmask.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xalgosegmask.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/segmask' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/segmask' cd objmgr/split/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=id2_split UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr/split' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split TMPL=id2_split -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/blob_splitter.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/blob_splitter.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbbitset.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/blob_splitter.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/blob_splitter.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbbitset.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/reader.hpp:32, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/reader.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/blob_splitter_params.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/blob_splitter_params.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/reader.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/split_blob.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/split_blob.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/split_blob.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbfilter.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbfilter.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/blob_splitter_impl.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/blob_splitter_impl.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/blob_splitter_impl.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/writer.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/writer.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/writer.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/blob_splitter_impl.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/blob_splitter_parser.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/blob_splitter_parser.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp:45:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbalias.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp:50: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/feature.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/writer.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/processors.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/feature.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/processors.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/blob_splitter_impl.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/blob_splitter_maker.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/blob_splitter_maker.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/metareg.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function ‘std::__cxx11::string ncbi::s_SeqDB_TryPaths(const string&, const string&, char, bool, ncbi::CSeqDB_FileExistence&, bool)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:356:79: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(blast_paths, s_GetPathSplitter(), roads, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/metareg.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function ‘void ncbi::SeqDB_ReadBinaryGiList(const string&, std::vector&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:794:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (((endp - beginp) < 2U) ~~~~~~~~~~~~~~~~^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function ‘void ncbi::SeqDB_ReadMemoryGiList(const char*, const char*, std::vector&, bool*)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:871:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (((bendp - bbeginp) < 2U) ~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/seqtitle.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/seqtitle.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/seqref.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/seqref.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/blob_id.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/seqref.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/seqref.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/blob_id.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/blob_id.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/blob_id.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/blob_id.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr/split' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/nIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In function ‘const string* ncbi::s_CheckUniqueValues(const std::map, std::__cxx11::basic_string >&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2034:37: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(v, ":", items); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In member function ‘void ncbi::CSeqDB_IdRemapper::AddMapping(int, int, const string&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2068:36: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(desc, ":", items); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In function ‘void ncbi::s_GetDetails(const string&, std::__cxx11::string&, std::__cxx11::string&, std::__cxx11::string&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2244:36: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(desc, ":", items); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/id_range.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/id_range.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/id_range.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/id_range.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/MolInfo_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/MolInfo.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/create_defline.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘void ncbi::objects::sequence::CDeflineGenerator::x_SetFlags(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp:804:45: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split( clause, ";", kywds ); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp: In function ‘bool x_EndsWithStrain(const ncbi::CTempString&, const ncbi::CTempString&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp:1068:80: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase (taxname, strain, 0, taxname.size() - 1, NStr::eLast); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp: In function ‘std::__cxx11::string s_RemoveBracketedOrgFromEnd(std::__cxx11::string, std::__cxx11::string)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp:1704:61: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProtein(const ncbi::objects::CBioseq_Handle&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp:1782:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (offset > 0 && offset < m_MainTitle.length()) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp: In function ‘size_t s_TitleEndsInOrganism(std::__cxx11::string&, ncbi::CTempString)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp:2397:68: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(title, taxname, 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp:2398:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos == idx + 2) { ~~~~^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘void ncbi::objects::sequence::CDeflineGenerator::x_AdjustProteinTitleSuffix(const ncbi::objects::CBioseq_Handle&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp:2468:83: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(m_MainTitle, "][", 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘std::__cxx11::string ncbi::objects::sequence::CDeflineGenerator::GenerateDefline(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp:2653:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/object_splitinfo.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/object_splitinfo.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/object_splitinfo.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/object_splitinfo.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/asn_sizer.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/asn_sizer.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/asn_sizer.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/asn_sizer.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/obj_sniff.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/obj_sniff.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/obj_sniff.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/obj_sniff.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/annot_piece.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/annot_piece.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/id_range.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/annot_piece.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/annot_piece.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/seq_loc_util.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/seq_loc_util.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/chunk_info.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/chunk_info.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/place_id.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/chunk_info.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/chunk_info.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/size.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/size.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/split/asn_sizer.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/size.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp:34:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdboidlist.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cbi-blast+-2.5.0/c++/src/objmgr/split/id_range.cpp -o id_range.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/size.cpp -o size.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.so .libid2_split.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid2_split.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcmake[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr/util' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/weight.cpp -o weight.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/sequence.cpp -o sequence.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/feature.cpp -o feature.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2kARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxobjmgr -lseqsplit -lseqset -lseq -lgeneral -lxser -lxcompress -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libid2_split.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libid2_split.so /bin/ln -f .id2_split.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.id2_split.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr/split' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr/split' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/seq_align_util.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/seq_align_util.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/sequence.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/seq_trimmer.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/seq_trimmer.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function ‘ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector >&, std::vector >&, std::vector&, ncbi::CSeqDBLockHold&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:938:9: warning: variable ‘found_short’ set but not used [-Wunused-but-set-variable] int found_short(-1); ^~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/sequence.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/objutil.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/objutil.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbtax.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbtax.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ AD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARG/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/objutil.cpp: In instantiation of ‘bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/objutil.cpp:1803:81: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/objutil.cpp:1731:57: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/reader_service.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/reader_service.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbblob.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/incr_time.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/incr_time.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objmgr/util/objutil.cpp -o objutil.o /bin/rm -f libxobjutil.so .libxobjutil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjutil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC weight.o sequence.o feature.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxobjmgr -lseqset -lseq -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxobjutil.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxobjutil.so /bin/ln -f .xobjutil.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xobjutil.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr/util' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr/util' cd objtools/alnmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=alnmgr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/alnmgr' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr TMPL=alnmgr -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/column_reader.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/column_reader.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/aln_builders.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/aln_builders.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/aln_builders.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/aln_builders.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/info_cache.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/info_cache.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/aln_converters.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/aln_converters.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ ast+-2.5.0/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libncbi_xreader.a /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libncbi_xreader.a /bin/rm -f libncbi_xreader.so .libncbi_xreader.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libncbi_xreader.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libncbi_xreader.so /bin/ln -f .ncbi_xreader-static.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.ncbi_xreader-static.dep /bin/ln -f .ncbi_xreader.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.ncbi_xreader.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/cleanup/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=cleanup UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/cleanup' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup TMPL=cleanup -w -j --jobserver-fds=3,4 all EFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /bin/rm -f libseqdb.so .libseqdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblastdb -lxobjmgr -lseq -lgeneral -lxser -lsequtil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libseqdb.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libseqdb.so /bin/ln -f .seqdb.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.seqdb.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader' cd objtools/seqmasks_io/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqmasks_io UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/seqmasks_io/mask_cmdline_args.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/fasta.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/aln_generators.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/aln_generators.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/aln_generators.cpp: In function ‘void ncbi::InitSplicedsegFromPairwiseAln(ncbi::objects::CSpliced_seg&, const ncbi::CPairwiseAln&, ncbi::objects::CScope*)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/aln_generators.cpp:538:44: warning: typedef ‘TAlnRngColl’ locally defined but not used [-Wunused-local-typedefs] typedef CAlignRangeCollection TAlnRngColl; ^~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/aln_seqid.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/aln_seqid.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/aln_seqid.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/pairwise_aln.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/aln_serial.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/aln_serial.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/aln_serial.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/aln_serial.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/align_range.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alndiag.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alndiag.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmap.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmap.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/alnmgr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /usIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmapprint.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmapprint.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmap.cpp: In member function ‘ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmap.cpp:1467:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (TNumrow row = 0; row < selected_rows.size(); row++) { ~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/cleanup.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/cleanup.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/seqmasks_io/mask_writer_int.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_writer_int.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/seqmasks_io/mask_writer_int.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_writer_int.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/nIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnseq.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmatch.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnmerger.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnseq.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmatch.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnmerger.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/cleanup.cpp: In static member function ‘static bool ncbi::objects::CCleanup::IsGeneXrefUnnecessary(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const ncbi::objects::CGene_ref&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/cleanup.cpp:734:84: warning: ‘ncbi::objects::sequence::ECompare ncbi::objects::sequence::Compare(const ncbi::objects::CSeq_loc&, const ncbi::objects::CSeq_loc&, ncbi::objects::CScope*)’ is deprecated [-Wdeprecated-declarations] sequence::Compare(g->second->GetLocation(), gene->GetLocation(), &scope) == sequence::eSame) { ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/sequence.hpp:52:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/cleanup.cpp:59: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/seq_loc_util.hpp:200:20: note: declared here sequence::ECompare Compare(const CSeq_loc& loc1, ^~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/cleanup.cpp: In static member function ‘static ncbi::CConstRef ncbi::objects::CCleanup::GetGeneForFeature(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/cleanup.cpp:1182:101: warning: ‘ncbi::objects::sequence::ECompare ncbi::objects::sequence::Compare(const ncbi::objects::CSeq_loc&, const ncbi::objects::CSeq_loc&, ncbi::objects::CScope*)’ is deprecated [-Wdeprecated-declarations] sequence::ECompare cmp = sequence::Compare(gf->GetLocation(), feat.GetLocation(), &scope); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/sequence.hpp:52:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/cleanup.cpp:59: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/seq_loc_util.hpp:200:20: note: declared here sequence::ECompare Compare(const CSeq_loc& loc1, ^~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/cleanup.cpp: In function ‘ncbi::SIZE_TYPE ncbi::objects::s_TitleEndsInOrganism(const string&, const string&, ncbi::SIZE_TYPE*)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/cleanup.cpp:1987:73: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] answer = NStr::FindNoCase(sTitle, sPattern, 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/cleanup.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/cleanup.cpp: In function ‘void ncbi::objects::s_RemoveOrgFromEndOfProtein(ncbi::objects::CBioseq&, std::__cxx11::string)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/cleanup.cpp:2041:73: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/cleanup.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function ‘static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] match1->m_ChainScore == match2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ match1->m_Score > match2->m_Score || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmatch.cpp: In member function ‘void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] (aln_seq1->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand1 == eNa_strand_minus || ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] aln_seq2->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand2 == eNa_strand_minus || ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] aln_seq2->m_StrandScore < 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand2 != eNa_strand_minus)) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_Merge()’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmerger.cpp:140:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_CreateDenseg()’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (start_its_i->second->first != -1) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmerger.cpp:1232:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnmix.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmix.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnmix.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmix.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_Merge()’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmerger.cpp:151:17: warning: ‘width2’ may be used uninitialized in this function [-Wmaybe-uninitialized] int width1, width2; ^~~~~~ cbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqmasks_io.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lseqdb -lxobjread -lxobjutil -lxobjmgr -lblastdb -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libseqmasks_io.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libseqmasks_io.so /bin/ln -f .seqmasks_io.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.seqmasks_io.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/seqmasks_io' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmix.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/seqmasks_io' cd algo/blast/dbindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgoblastdbindex UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/fasta.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/dbindex/sequence_istream_bdb.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnsegments.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnsegments.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/dbindex/sequence_istream_bdb.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnseq.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnsegments.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnsegments.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnseq.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnseq.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnsegments.cpp:35:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnsegments.cpp: In member function ‘void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (plus && prev_start_plus_len < start || ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/cleanup_utils.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/cleanup_utils.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/cleanup_utils.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnseq.cpp:37:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnseq.cpp: In static member function ‘static bool ncbi::objects::CAlnMixSequences::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnseq.cpp:84:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_ChainScore == seq2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_Score > seq2->m_Score || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/dbindex.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/dbindex.cpp:42: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ r/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/dbindex.cpp: In function ‘const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] unsigned long tmp; ^~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnvec.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnvec.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnvec.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnvec.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnvec_iterator.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/misc/sequence_util_macros.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/biblio/biblio_macros.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/misc/sequence_macros.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/newcleanupp.cpp:41: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnvec.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnvecprint.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnvec.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnvecprint.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/object_manager.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp:40: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp:41: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function ‘void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function ‘void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/pairwise_aln.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/pairwise_aln.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function ‘std::__cxx11::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: ‘std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)’ is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/sequence.hpp:288:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/pairwise_aln.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::x_CleanupOrgModNoteEC(ncbi::objects::COrg_ref&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/newcleanupp.cpp:5317:33: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] org.IsSetTaxname() && NStr::Equal(org.GetTaxname(), (*it)->GetSubname()))) { ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::x_SeqFeatTRNABC(ncbi::objects::CSeq_feat&, ncbi::objects::CTrna_ext&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/newcleanupp.cpp:5896:19: warning: unused variable ‘comment’ [-Wunused-variable] const string &comment = ( FIELD_IS_SET(feat, Comment) ? GET_FIELD(feat, Comment) : kEmptyStr ); ^~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/newcleanupp.cpp: In function ‘bool ncbi::objects::HasAuthor(const ncbi::objects::CPubdesc&, bool)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/newcleanupp.cpp:11115:10: warning: unused variable ‘is_patent’ [-Wunused-variable] bool is_patent = false; ^~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/newcleanupp.cpp: In static member function ‘static bool ncbi::objects::CNewCleanup_imp::ShouldRemoveAnnot(const ncbi::objects::CSeq_annot&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/newcleanupp.cpp:11394:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (!s_RetainEmptyAnnot(annot) && ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ (annot.IsFtable() && annot.GetData().GetFtable().empty()) || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/sparse_aln.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/sparse_aln.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/sparse_aln.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/sparse_ci.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/sparse_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/sparse_aln.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/sparse_ci.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/sparse_ci.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/dbindex_search.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/dbindex/sequence_istream.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/dbindex/dbindex.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/dbindex_search.cpp:47: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alntext.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/general__.hpp:1, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alntext.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ .5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/score_builder_base.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/score_builder_base.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/score_builder_base.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/score_builder_base.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/winmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgowinmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/winmask' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask TMPL=xalgowinmask -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/dbindex' /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgoblastdbindex.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast -lseqdb -lxobjread -lxobjutil -lxobjmgr -lseqset -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxalgoblastdbindex.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxalgoblastdbindex.so /bin/ln -f .xalgoblastdbindex.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xalgoblastdbindex.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/dbindex' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/dbindex' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ SET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /bin/rm -f libxalnmgr.so .libxalnmgr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalnmgr.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxobjutil -lxobjmgr -lseqset -lseq -lxser -ltables -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxalnmgr.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxalnmgr.so /bin/ln -f .xalnmgr.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xalnmgr.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/alnmgr' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/alnmgr' cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader_cache UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_istat.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_score.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_score.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_score_min.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_score_min.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/reader.hpp:32, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_util.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_util.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/winmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbiIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_window.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_window.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_util.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_window_pattern.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_util.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_ostat_factory.hpp:39:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_ostat_factory.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/writer.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_ostat.hpp:39:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_ostat.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:39:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -blast+-2.5.0/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blasIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_uset_simple.hpp:39:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_uset_simple.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_istat_factory.hpp:39:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_istat_factory.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/cleanup' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /bin/rm -f libxcleanup.so .libxcleanup.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcleanup.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o newcleanupp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxobjutil -lvalid -lsubmit -ltaxon3 -lxregexp -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lpcre /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxcleanup.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxcleanup.so /bin/ln -f .xcleanup.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xcleanup.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/cleanup' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/cleanup' cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_ostat.hpp:39:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_ostat_bin.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_ostat_bin.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/id1/reader_id1.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_cache.a /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libncbi_xreader_cache.a /bin/rm -f libncbi_xreader_cache.so .libncbi_xreader_cache.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_cache.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC reader_cache.o writer_cache.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_cache.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libncbi_xreader_cache.so /bin/ln -f .ncbi_xreader_cache-static.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.ncbi_xreader_cache-static.dep /bin/ln -f .ncbi_xreader_cache.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.ncbi_xreader_cache.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_uset_array.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_uset_array.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_istat_bin.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_ostat_opt.cpp:38:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_ostat.hpp:39:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_ostat_opt_ascii.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastdb_format UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j --jobserver-fds=3,4 all t+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/buIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_uset_hash.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_uset_hash.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp ar cr libncbi_xreader_id1.a reader_id1.o /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id1.a /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libncbi_xreader_id1.a /bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC reader_id1.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id1.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libncbi_xreader_id1.so /bin/ln -f .ncbi_xreader_id1-static.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.ncbi_xreader_id1-static.dep /bin/ln -f .ncbi_xreader_id1.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.ncbi_xreader_id1.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp ar cr libncbi_xreader_id2.a reader_id2.o /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id2.a /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libncbi_xreader_id2.a /bin/rm -f libncbi_xreader_id2.so .libncbi_xreader_id2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC reader_id2.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id2.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libncbi_xreader_id2.so /bin/ln -f .ncbi_xreader_id2-static.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.ncbi_xreader_id2-static.dep /bin/ln -f .ncbi_xreader_id2.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.ncbi_xreader_id2.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' cd objtools/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xformat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/format' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format TMPL=xformat -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/accession_item.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/accession_item.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp: In constructor ‘ncbi::CSeqMaskerIstatOAscii::CSeqMaskerIstatOAscii(const string&, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:113:60: warning: ‘unit_size’ may be used uninitialized in this function [-Wmaybe-uninitialized] if( k == 0U || k > (Uint4)(2*unit_size - 1) ) ~~~~~~~~~~~~~^~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_ostat.hpp:39:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_ostat_opt_bin.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/basecount_item.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/basecount_item.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_cache_boost.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_cache_boost.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/comment_item.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/Seq_feat_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/Seq_feat.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/comment_item.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_util.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/win_mask_counts_converter.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/win_mask_counts_converter.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/win_mask_counts_converter.cpp:42: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.so .libncbi_xloader_blastdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_blastdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC bdbloader.o cached_sequence.o local_blastdb_adapter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lseqdb -lxobjmgr -lseqset -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_blastdb.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libncbi_xloader_blastdb.so /bin/ln -f .ncbi_xloader_blastdb.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.ncbi_xloader_blastdb.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/blastdb' cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=makeindex LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/fasta.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/win_mask_dup_table.cpp:40: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/win_mask_dup_table.cpp:40: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /bin/rm -f libblastdb_format.so .libblastdb_format.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastdb_format.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq_writer.o blastdb_dataextract.o blastdb_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lseqdb -lxobjutil -lxobjmgr -lseq -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libblastdb_format.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblastdb_format.so /bin/ln -f .blastdb_format.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.blastdb_format.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/blastdb_format' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/blastdb_format' cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/contig_item.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Delta_ext_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Delta_ext.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/contig_item.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:49: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ ild/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp: In function ‘void s_TestPartialAmbigRange(ncbi::CSeqDB&, int, int, int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:79:18: warning: variable ‘wholeL’ set but not used [-Wunused-but-set-variable] int wholeL(0); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp: In member function ‘void seqdb::CSeqDBIsam_32bit_GI::test_method()’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:4448:45: warning: integer overflow in expression [-Woverflow] const Uint4 big_gi = 3L * 1024L * 1024L * 1024L; // 3 "billion" ~~~~~~~~~~~~~~~~~~~^~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/date_item.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/date_item.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie main.o mkindex_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lseqdb -lblastdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o makembindex /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f makembindex /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/makembindex make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/dbindex/makeindex' cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=writedb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/dbsource_item.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Dbtag_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Dbtag.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/dbsource_item.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/sequence.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/win_mask_util.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/win_mask_util.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/win_mask_util.cpp: In member function ‘virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: ‘std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)’ is deprecated [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/win_mask_util.cpp:37:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/sequence.hpp:288:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/accession_item.cpp -o accession_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/comment_item.cpp -o comment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/contig_item.cpp -o contig_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/date_item.cpp -o date_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/defline_item.In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/defline_item.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/defline_item.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/win_mask_config.hpp:41:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/win_mask_config.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/win_mask_config.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/win_mask_config.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/win_mask_config.cpp: In static member function ‘static void ncbi::CWinMaskConfig::AddWinMaskArgs(ncbi::CArgDescriptions&, ncbi::CWinMaskConfig::EAppType, bool)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/win_mask_config.cpp:181:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if(type == eAny || type >= eGenerateMasksWithDuster) ^~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/win_mask_config.cpp:185:9: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ arg_desc.AddDefaultKey( "dust_level", "dust_level", ^~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/feature_item.cpp:45: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/feature_item.cpp: In function ‘void ncbi::objects::s_SplitCommaSeparatedStringInParens(std::vector >&, const string&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/feature_item.cpp:874:120: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( string_to_split.substr( 1, string_to_split.length() - amount_to_chop_off_end - 1), ",", output_vec ); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/feature_item.cpp: In member function ‘void ncbi::objects::CFeatureItem::x_AddQualExceptions(ncbi::objects::CBioseqContext&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/feature_item.cpp:1393:49: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split( raw_exception, ",", exceptions ); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/feature_item.cpp: In function ‘const string& ncbi::objects::s_AaName(int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/feature_item.cpp:1790:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/feature_item.cpp: In function ‘void ncbi::objects::s_ParseParentQual(const ncbi::objects::CGb_qual&, std::__cxx11::list >&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/feature_item.cpp:3355:37: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(val, "(,)", vals); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/feature_item.cpp: In member function ‘void ncbi::objects::CFeatureItem::x_AddRptUnitQual(const string&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/feature_item.cpp:3786:39: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(tmp, ",", units); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_istat.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_istat.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_istat.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp: In constructor ‘ncbi::CWriteDB_File::CWriteDB_File(const string&, const string&, int, Uint8, bool)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:115:64: warning: integer overflow in expression [-Woverflow] static const Uint8 MAX_FILE_SIZE = (1L << MAX_OFFSET_BITS) - 1L; ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:115:24: warning: unused variable ‘MAX_FILE_SIZE’ [-Wunused-variable] static const Uint8 MAX_FILE_SIZE = (1L << MAX_OFFSET_BITS) - 1L; ^~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp: In member function ‘int ncbi::CWriteDB_File::Write(const ncbi::CTempString&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:147:61: warning: integer overflow in expression [-Woverflow] static const Uint8 MAX_OFFSET = (1L << MAX_OFFSET_BITS) - 1L; ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:147:24: warning: unused variable ‘MAX_OFFSET’ [-Wunused-variable] static const Uint8 MAX_OFFSET = (1L << MAX_OFFSET_BITS) - 1L; ^~~~~~~~~~ /ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.so .libxalgowinmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgowinmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lseqmasks_io -lxobjread -lxobjutil -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxalgowinmask.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxalgowinmask.so /bin/ln -f .xalgowinmask.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xalgowinmask.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/winmask' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/winmask' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genome_item.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genome_item.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/ctrl_items.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/ctrl_items.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/keywords_item.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/locus_item.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqblock/PIR_block_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqblock/PIR_block.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/keywords_item.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ltest_boost -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -ldl -lm -lpthread -o seqdb_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f seqdb_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/seqdb_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdb_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/locus_item.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/blastdb_format/unit_test TMPL=blastdb_format_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/keywords_item.cpp: In member function ‘void ncbi::objects::CKeywordsItem::x_AddKeyword(const string&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/keywords_item.cpp:378:38: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split( keyword, ";", kywds ); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/keywords_item.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/sequtil/sequtil_convert.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/primary_item.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Dbtag_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Dbtag.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/primary_item.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/reference_item.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/reference_item.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/primary_item.cpp: In member function ‘void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/primary_item.cpp:213:63: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/primary_item.cpp:214:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (this_start < (15 + last_stop) ) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/reference_item.cpp: In static member function ‘static void ncbi::objects::CReferenceItem::ChangeMedlineAuthorsToISO(ncbi::CRef)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/reference_item.cpp:1300:72: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(author_name, " ", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/reference_item.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cpp -o defline_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/feature_item.cpp -o feature_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genome_item.cpp -o genome_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/locus_item.cpp -o locus_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/primary_item.cpp -o primary_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/reference_item.cpp -o reference_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp -o seq_writer_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seq_writer_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ltest_boost -lblastdb_format -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -ldl -lm -lpthread -o blastdb_format_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_format_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f blastdb_format_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/blastdb_format_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gene_info_reader LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/segment_item.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/segment_item.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gene_info_reader_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lgene_info -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o gene_info_reader /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f gene_info_reader /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/gene_info_reader make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqdb_demo LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastdb/Blast_filter_program_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastdb/Blast_filter_program.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/mask_info_registry.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastdb/Blast_filter_program_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastdb/Blast_filter_program.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/mask_info_registry.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/sequence_item.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/sequence_item.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/source_item.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqblock/GB_block_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqblock/GB_block.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/source_item.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/taxid_set.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/taxid_set.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_demo.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o seqdb_demo /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f seqdb_demo /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/seqdb_demo make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/source_item.cpp: In member function ‘void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/source_item.cpp:257:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( genome >= s_organelle_prefix_size ) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/version_item.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/version_item.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbienv.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/build_db.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/build_db.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/wgs_item.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/wgs_item.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_perf.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o seqdb_perf /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f seqdb_perf /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/seqdb_perf make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_services_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/services/unit_test TMPL=blast_services_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/tsa_item.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/tsa_item.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/services/blast_services.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/services/blast_services.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Int_fuzz_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Int_fuzz.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/flat_seqloc.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Int_fuzz_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Int_fuzz.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/flat_seqloc.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ enmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/segment_item.cpp -o segment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/source_item.cpp -o source_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/version_item.cpp -o version_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/qualifiers.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Dbtag_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Dbtag.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/qualifiers.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/typeinfo.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/seqloc__.hpp:1, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/context.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/context.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ 2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp -o blast_services_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_services_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ltest_boost -lblast_services -lxnetblastcli -lxnetblast -lseqdb -lblastdb -lscoremat -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blast_services_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_services_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f blast_services_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/blast_services_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/services/unit_test' cd algo/blast/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xblast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api TMPL=xblast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:57, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/criteria.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:59, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/criteria.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_aux.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_aux.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /bin/rm -f libwritedb.so .libwritedb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libwritedb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lseqdb -lxobjread -lxobjmgr -lblastdb -lseqset -lseq -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libwritedb.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libwritedb.so /bin/ln -f .writedb.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.writedb.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_writer' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_writer' cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gather_items.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gather_items.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/embl_gather.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/items/item.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/item_ostream.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/embl_gather.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gather_items.cpp: In member function ‘void ncbi::objects::CFlatGatherer::x_IdComments(ncbi::objects::CBioseqContext&, ncbi::objects::CFlatGatherer::EGenomeAnnotComment) const’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gather_items.cpp:1017:34: warning: unused variable ‘format’ [-Wunused-variable] CCommentItem::ECommentFormat format = ctx.Config().DoHTML() ? ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gather_items.cpp: At global scope: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gather_items.cpp:747:13: warning: ‘bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)’ defined but not used [-Wunused-function] static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) ^~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_cxx.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_cxx.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_gather.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Object_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/Object_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_gather.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/impl/gbload_util.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_local_priv.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_local_priv.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_local_priv.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_local_priv.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbload_util.o /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_genbank.a /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libncbi_xloader_genbank.a /bin/rm -f libncbi_xloader_genbank.so .libncbi_xloader_genbank.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_genbank.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC gbloader.o gbload_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_genbank.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libncbi_xloader_genbank.so /bin/ln -f .ncbi_xloader_genbank-static.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.ncbi_xloader_genbank-static.dep /bin/ln -f .ncbi_xloader_genbank.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.ncbi_xloader_genbank.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/flat_file_generator.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/flat_file_generator.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_local_priv.cpp: In member function ‘bool ncbi::blast::CBlastOptionsLocal::Validate() const’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_local_priv.cpp:379:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_local_priv.cpp:388:9: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return true; ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/item_formatter.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/biblio/Cit_book_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/biblio/Cit_book.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/item_formatter.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/remote_blast.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_builder.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/flat_file_generator.cpp: In member function ‘void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/flat_file_generator.cpp:185:10: warning: unused variable ‘nearFeatsSuppress’ [-Wunused-variable] bool nearFeatsSuppress = false; ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/flat_file_generator.cpp:188:10: warning: variable ‘isNgNtNwNz’ set but not used [-Wunused-but-set-variable] bool isNgNtNwNz = false; ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/flat_file_generator.cpp:189:10: warning: variable ‘isGED’ set but not used [-Wunused-but-set-variable] bool isGED = false; ^~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/flat_file_generator.cpp:190:10: warning: variable ‘isTPA’ set but not used [-Wunused-but-set-variable] bool isTPA = false; ^~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/remote_blast.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_builder.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/context.cpp -o context.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gather_items.cpp -o gather_items.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/embl_formatter.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/embl_formatter.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/util_misc.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_setup_cxx.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_setup_cxx.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_blastdb_rmt.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lncbi_xloader_blastdb -lblast_services -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/blastdb' cd objtools/simple/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xobjsimple UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/simple' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/simple TMPL=xobjsimple -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/format_item_ostream.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/items/item.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/item_ostream.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/format_item_ostream.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/format_item_ostream.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/simple/simple_om.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/simple/simple_om.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/simple/simple_om.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/simple/simple_om.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/item_ostream.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/item_ostream.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/tempstr.hpp:38:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CGapItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::COriginItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CContigItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CPrimaryItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CTSAItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CWGSItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CDBSourceItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSequenceItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CBaseCountItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CFeatureItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSourceFeatureItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CFeatHeaderItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CCommentItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CReferenceItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSourceItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSegmentItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CKeywordsItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CHtmlAnchorItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CGenomeProjectItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CVersionItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CAccessionItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CDeflineItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CLocusItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CEndSectionItem]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/ostream_text_ostream.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/ostream_text_ostream.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/ostream_text_ostream.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/simple' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.so .libxobjsimple.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjsimple.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC simple_om.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lncbi_xloader_genbank -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxobjsimple.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxobjsimple.so /bin/ln -f .xobjsimple.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xobjsimple.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/simple' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/simple' cd app/dustmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=dustmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/dustmasker' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/dustmasker TMPL=dustmasker -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/origin_item.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/origin_item.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_seqalign.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_seqalign.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/dustmasker/main.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_seqalign.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_seqalign.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/dustmasker/dust_mask_app.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/dustmasker/main.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/ftable_gather.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/dustmasker/dust_mask_app.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/items/item.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/item_ostream.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/ftable_gather.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ FSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/origin_item.cpp -o origin_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -WdatIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/dustmasker/dust_mask_app.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/dustmasker/dust_mask_app.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/ftable_formatter.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/ftable_formatter.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/buiIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_nucl_options.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_nucl_options.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/dustmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/dustmasker/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie main.o dust_mask_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o dustmasker /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f dustmasker /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/dustmasker make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/dustmasker' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/dustmasker' cd app/winmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=winmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/winmasker' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/winmasker TMPL=winmasker -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_handle.cpp: In member function ‘char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_handle.cpp:99:36: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_handle.cpp: In member function ‘void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_handle.cpp:105:37: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gbseq_formatter.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/winmasker/win_mask_app.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/winmasker/main.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gbseq_formatter.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/fasta.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/winmasker/win_mask_app.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/disc_nucl_options.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/disc_nucl_options.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/winmasker/win_mask_app.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/disc_nucl_options.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/disc_nucl_options.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_prot_options.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_prot_options.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gbseq_formatter.cpp: In function ‘void ncbi::objects::s_GBSeqStringCleanup(std::__cxx11::string&, bool)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gbseq_formatter.cpp:82:36: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, " \n\r\t\b", l); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gbseq_formatter.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gbseq_formatter.cpp: In member function ‘virtual void ncbi::objects::CGBSeqFormatter::FormatGenomeProject(const ncbi::objects::CGenomeProjectItem&, ncbi::objects::IFlatTextOStream&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gbseq_formatter.cpp:358:37: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(second, ",", ids); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gbseq_formatter.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gbseq_formatter.cpp: In member function ‘void ncbi::objects::CGBSeqFormatter::x_StrOStreamToTextOStream(ncbi::objects::IFlatTextOStream&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gbseq_formatter.cpp:685:70: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split((string)CNcbiOstrstreamToString(m_StrStream), "\n", l); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gbseq_formatter.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/psiblast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psiblast_options.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/psiblast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psiblast_options.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_rps_options.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_rps_options.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/dustmask/symdust.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/flat_file_config.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/flat_file_config.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/items/item_base.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/items/accession_item.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/flat_file_config.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ ld/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blastx_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blastx_options.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blastx_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blastx_options.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/tblastx_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/tblastx_options.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/flat_file_config.cpp: In function ‘ncbi::objects::CFlatFileConfig::TGenbankBlocks ncbi::objects::{anonymous}::x_GetGenbankBlocks(const ncbi::CArgs&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/flat_file_config.cpp:841:52: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(blocks_arg, ",", vecOfBlockNames); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/flat_file_config.hpp:34, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/flat_file_config.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/tblastx_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/tblastx_options.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/winmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/winmasker/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o windowmasker /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f windowmasker /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/windowmasker make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/winmasker' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/winmasker' cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=writedb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/tblastn_options.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/tblastn_options.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/tblastn_options.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/tblastn_options.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/rpstblastn_options.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/rpstblastn_options.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/rpstblastn_options.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/rpstblastn_options.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/alignment_item.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/alignment_item.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function ‘void writedb::CSeqDBIsam_32bit_GI::test_method()’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:2851:45: warning: integer overflow in expression [-Woverflow] const Uint4 big_gi = 3L * 1024L * 1024L * 1024L; // 3 "billion" ~~~~~~~~~~~~~~~~~~~^~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gap_item.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/items/item_base.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/items/gap_item.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gap_item.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genome_project_item.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genome_project_item.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/pssm_engine.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/local_blast.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/pssm_engine.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/local_blast.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ E_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/cigar_formatter.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/sam_formatter.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/cigar_formatter.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/sam_formatter.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/remote_blast.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/remote_blast.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/sequence.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ e-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gap_item.cpp -o gap_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/cigar_formatter.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/cigar_formatter.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_seqinfosrc.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/gather_iter.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gather_iter.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Bioseq_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqset/Bioseq_set.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_set_handle.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_entry_ci.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/gather_iter.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gather_iter.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:59, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:43: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/items/item_base.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/items/html_anchor_item.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/html_anchor_item.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/items/item_base.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/items/html_anchor_item.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/html_anchor_item.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ 0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o /usr/bin/g++ -std=gnu++11 -c -WalIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/bl2seq.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/inst_info_map.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/inst_info_map.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/bl2seq.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp -o writedb_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp -o criteria_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie writedb_unit_test.o criteria_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o writedb_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f writedb_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/writedb_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' cd objtools/align_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=align_format UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/align_format' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format TMPL=align_format -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/align_format/format_flags.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/format_flags.cpp:30: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/align_format/align_format_util.hpp:32, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/align_format_util.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/items/gene_finder.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gene_finder.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/items/gene_finder.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gene_finder.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/align_format/align_format_util.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/align_format_util.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_mtlock.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/psibl2seq.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psibl2seq.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/psibl2seq.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psibl2seq.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/items/flat_qual_slots.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/flat_qual_slots.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/OrgMod_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/OrgMod.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/items/flat_qual_slots.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/flat_qual_slots.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/local_db_adapter.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/local_db_adapter.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ READ_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.so .libxformat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxformat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_maIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/local_db_adapter.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/local_db_adapter.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ p.o gene_finder.o flat_qual_slots.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxcleanup -lvalid -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lsubmit -lxalnmgr -lxobjutil -ltaxon3 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxformat.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxformat.so /bin/ln -f .xformat.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xformat.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/format' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/format' l -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/pIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/showdefline.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/psiblast.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psiblast.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/psiblast.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psiblast.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/showdefline.cpp:40: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psiblast_impl.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psiblast_impl.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psiblast_impl.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psiblast_impl.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psiblast_iteration.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psiblast_iteration.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/psi_pssm_input.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psi_pssm_input.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/psi_pssm_input.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psi_pssm_input.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/msa_pssm_input.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/msa_pssm_input.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/msa_pssm_input.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/msa_pssm_input.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/align_format/align_format_util.hpp:32, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/showalign.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/align_format/align_format_util.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/showalign.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function ‘void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/msa_pssm_input.cpp:376:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (k < m_Msa->dimensions->query_length && ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/tabular.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/tabular.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psiblast_aux_priv.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psiblast_aux_priv.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/showalign.cpp: In function ‘void ncbi::align_format::s_MakeDomainString(int, int, const string&, std::__cxx11::string&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/showalign.cpp:4424:49: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/showalign.cpp:4424:81: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_aux_priv.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_aux_priv.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_aux_priv.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_aux_priv.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ siblast.cpp -o psiblast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_advprot_options.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_advprot_options.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/version.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/version.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/version.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/rps_aux.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/dust_filter.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/dust_filter.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/dust_filter.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/dust_filter.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/html/html.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/align_format/vectorscreen.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/vectorscreen.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/align_format/vectorscreen.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/vectorscreen.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/rps_aux.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/search_strategy.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/search_strategy.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/setup_factory.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/align_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/showalign.cpp -o showalign.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/tabular.cpp -o tabular.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/setup_factory.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/align_format/seqalignfilter.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/seqalignfilter.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/align_format/seqalignfilter.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/seqalignfilter.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ 0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/version.cpp -o version.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/taxFormat.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/taxFormat.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/prelim_stage.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/aln_printer.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/traceback_stage.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/traceback_stage.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/aln_printer.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/prelim_stage.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/traceback_stage.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/traceback_stage.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/uniform_search.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/uniform_search.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/scoremat/Pssm_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/scoremat/Pssm.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/local_search.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/scoremat/Pssm_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/scoremat/Pssm.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/local_search.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_results.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_results.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_diag.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/seqalign__.hpp:1, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/remote_search.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Dense_diag.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/seqalign__.hpp:1, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/remote_search.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.so .libalign_format.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libalign_format.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxalnmgr -lncbi_xloader_genbank -lseqdb -lblast_services -lxobjread -lxobjutil -lxobjmgr -lxnetblast -lblastdb -lgene_info -ltaxon1 -lseqset -lseq -lgeneral -lxser -lxcgi -lxhtml -ltables -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libalign_format.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libalign_format.so /bin/ln -f .align_format.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.align_format.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/align_format' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/align_format' cd objtools/align_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=align_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/unit_test TMPL=align_format_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/query_data.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/query_data.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/objmgr_query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/objmgr_query_data.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/objmgr_query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/objmgr_query_data.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/local_search.cpp -o local_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/query_data.cpp -o query_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/objmgrfree_query_data.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/objmgrfree_query_data.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/effsearchspace_calc.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_dbindex.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_dbindex.cpp:43: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/split_query.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/split_query_cxx.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/split_query.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/split_query_cxx.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/effsearchspace_calc.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ T -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=formaIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/split_query_blk.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/split_query_blk.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/split_query.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/split_query_aux_priv.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/split_query_blk.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/sseqloc.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/winmask_filter.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/winmask_filter.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/winmask_filter.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/winmask_filter.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/subj_ranges_set.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/subj_ranges_set.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/subj_ranges_set.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/subj_ranges_set.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/rpsblast_local.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/rpsblast_local.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/seedtop.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seedtop.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/seedtop.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seedtop.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seedtop.cpp: In member function ‘void ncbi::blast::CSeedTop::x_ParsePattern()’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seedtop.cpp:66:56: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(NStr::ToUpper(m_Pattern), "-", units); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/seedtop.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seedtop.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/cdd_pssm_input.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:43: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/cdd_pssm_input.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ t-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/psiblast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/deltablast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/deltablast_options.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/psiblast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/deltablast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/deltablast_options.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/psiblast.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/deltablast.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/psiblast.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/deltablast.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/magicblast_options.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/magicblast_options.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/magicblast_options.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/magicblast_options.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/magicblast.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/magicblast.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:43: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o /bin/rm -f libxblast.so .libxblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxalgoblastdbindex -lcomposition_adjustment -lxalgowinmask -lxalgodustmask -lseqmasks_io -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lblastdb -lxnetblastcli -lxnetblast -lscoremat -lxconnect -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lblast -lseqdb -lseqset -lseq -lgeneral -lxser -lxconnect -lsequtil -ltables -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxblast.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxblast.so /bin/ln -f .xblast.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xblast.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/api' cd algo/blast/blastinput/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastinput UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xblastformat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/format' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format TMPL=xblastformat -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput TMPL=blastinput -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blast_input.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/version.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/version.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/format/blastfmtutil.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blastfmtutil.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blast_input.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/format/blastfmtutil.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blastfmtutil.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp -o showdefline_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp -o showalign_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/unit_test/blast_test_util.cpp -o blast_test_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp -o vectorscreen_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp -o tabularinof_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp -o aln_printer_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie showdefline_unit_test.o showalign_unit_test.o blast_test_util.o vectorscreen_unit_test.o tabularinof_unit_test.o aln_printer_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ltest_boost -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lxcgi -lxhtml -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o align_format_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f align_format_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f align_format_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/align_format_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/align_format/unit_test' cd algo/blast/igblast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=igblast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/igblast' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/igblast TMPL=igblast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/igblast/igblast.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/igblast/igblast.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/igblast/igblast.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/igblast/igblast.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/object_manager.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_scope_src.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/object_manager.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blastxml_format.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/igblast/igblast.cpp: In constructor ‘ncbi::blast::CIgAnnotationInfo::CIgAnnotationInfo(ncbi::CConstRef&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/igblast/igblast.cpp:92:65: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*l, " \t\n\r", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/igblast/igblast.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/igblast/igblast.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/igblast/igblast.cpp:116:65: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*l, " \t\n\r", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/igblast/igblast.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/igblast/igblast.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/igblast/igblast.cpp: In member function ‘void ncbi::blast::CIgBlast::x_ScreenV(ncbi::CRef&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/igblast/igblast.cpp:138:73: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if((*it)->GetAlignLength() - (*it)->GetTotalGapCount(0) < m_IgOptions->m_MinVLength){ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blastxml_format.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blastxml_format.cpp: In function ‘void ncbi::s_SeqAlignSetToXMLHits(std::__cxx11::list >&, const ncbi::objects::CSeq_align_set&, ncbi::objects::CScope*, const ncbi::CBlastFormattingMatrix*, const ncbi::TMaskedQueryRegions*, bool, int, int, ncbi::CNcbiOstream*)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blastxml_format.cpp:501:86: warning: ‘ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)’ is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/tempstr.hpp:39:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/object_manager.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blastxml_format.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimisc.hpp:1216:38: note: in definition of macro ‘NCBI_DEPRECATED_CTOR’ # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blastxml_format.cpp: In function ‘bool ncbi::s_SerializeAndSplitBy(const ncbi::CSerialObject&, const char*, std::__cxx11::string&, std::__cxx11::string&, bool, bool)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blastxml_format.cpp:785:89: warning: ‘ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)’ is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/tempstr.hpp:39:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/object_manager.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blastxml_format.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimisc.hpp:1216:38: note: in definition of macro ‘NCBI_DEPRECATED_CTOR’ # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/version.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/version.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blast_args.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blast_args.cpp:40: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/cmdline_flags.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/cmdline_flags.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/sseqloc.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/igblast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.so .libigblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libigblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC igblast.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libigblast.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libigblast.so /bin/ln -f .igblast.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.igblast.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/igblast' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/igblast' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=aalookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=aalookup_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/object_manager.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blastxml2_format.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blastxml2_format.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/blastinput' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -IIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blastp_args.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blastp_args.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: aalookup_unit_test.o: undefined reference to symbol 'BlastScoreBlkFree' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp -o aalookup_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie aalookup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o aalookup_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie aalookup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o aalookup_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f aalookup_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f aalookup_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/aalookup_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=aascan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=aascan_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/sseqloc.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/format/blast_format.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blast_format.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/format/blast_format.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blast_format.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blastn_args.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blastn_args.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blast_format.cpp:49:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/format/data4xmlformat.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/format/blast_format.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blast_format.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blast_format.cpp:51:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/format/data4xml2format.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/format/blast_format.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blast_format.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blast_format.cpp: In member function ‘void ncbi::CBlastFormat::x_SplitSeqAlign(ncbi::CConstRef, ncbi::objects::CSeq_align_set&, ncbi::objects::CSeq_align_set&, ncbi::blast::CPsiBlastIterationState::TSeqIds&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blast_format.cpp:505:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(count >= m_NumSummary) ~~~~~~^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blastx_args.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blastx_args.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: aascan_unit_test.o: undefined reference to symbol 'BlastScoreBlkFree' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie aascan_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o aascan_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie aascan_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o aascan_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f aascan_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f aascan_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/aascan_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/data4xmlformat.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/data4xmlformat.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/data4xmlformat.cpp:37:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/format/data4xmlformat.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/format/data4xmlformat.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/data4xmlformat.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/data4xml2format.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/data4xml2format.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/data4xml2format.cpp:36:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/format/data4xml2format.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/format/data4xml2format.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/data4xml2format.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRA/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITSIn file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/build_archive.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/build_archive.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/sseqloc.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/format/blast_format.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/vecscreen_run.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/format/blast_format.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/vecscreen_run.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/sam_formatter.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/format/sam.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/sam.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/format/sam_formatter.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/format/sam.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/sam.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdiag_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=blastdiag_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/format/sam.cpp -o sam.o /bin/rm -f libxblastformat.so .libxblastformat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxblastformat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxformat -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lalign_format -lblastxml -lblastxml2 -lxhtml -lxcgi -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libxblastformat.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libxblastformat.so /bin/ln -f .xblastformat.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.xblastformat.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/format' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/format' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastengine_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=blastengine_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blastdiag_unit_test.o: In function `BlastDiag::testDiagClear::test_method()': ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:56: undefined reference to `BlastExtendWordNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:66: undefined reference to `Blast_ExtendWordExit' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:75: undefined reference to `BlastExtendWordFree' blastdiag_unit_test.o: In function `BlastDiag::testDiagUpdateFull::test_method()': ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:93: undefined reference to `BlastExtendWordNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:103: undefined reference to `Blast_ExtendWordExit' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:112: undefined reference to `BlastExtendWordFree' blastdiag_unit_test.o: In function `BlastDiag::testDiagUpdateNotFull::test_method()': ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:131: undefined reference to `BlastExtendWordNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:141: undefined reference to `Blast_ExtendWordExit' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:150: undefined reference to `BlastExtendWordFree' collect2: error: ld returned 1 exit status In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function ‘void blastengine::testBlastpPrelimSearch::test_method()’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:441:33: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] options->SetFilterString("L"); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:53: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp -o blastdiag_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdiag_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastdiag_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdiag_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o blastdiag_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdiag_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f blastdiag_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/blastdiag_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastextend_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=blastextend_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/sequence.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastfilter_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=blastfilter_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ =64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o /bin/rm -f libblastinput.so .libblastinput.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastinput.so -Wl,--enable-new-dtags -Wl,-export-dynam/usr/bin/ld: blastengine_unit_test.o: undefined reference to symbol 'BlastSeqSrcFree' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp -o blastengine_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastengine_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastengine_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastengine_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o blastengine_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastengine_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f blastengine_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/blastengine_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=blasthits_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/simple/simple_om.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ ic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o blast_asn1_input.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxblast -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lseqdb -lxobjread -lxobjread -lvariation -lcreaders -lsubmit -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxutil -lncbi_xloader_genbank -lncbi_xreader_id2 -lncbi_xreader -lscoremat -lseqset -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib /bin/ln -f libblastinput.so /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblastinput.so /bin/ln -f .blastinput.dep /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/status/.blastinput.dep make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/blastinput' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/blastinput' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastoptions_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=blastoptions_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: blastextend_unit_test.o: undefined reference to symbol 'MBSpaceFree' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp -o blastextend_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastextend_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastextend_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastextend_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o blastextend_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastextend_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f blastextend_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/blastextend_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastsetup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=blastsetup_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35:0: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::RemoteOptionsTest::test_method()’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:71:60: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] BOOST_CHECK_NO_THROW(opts.SetFilterString("m L", false)); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:145:9: note: in definition of macro ‘BOOST_CHECK_NO_THROW_IMPL’ S; \ ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testRemoteFilterString::test_method()’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1327:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1331:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1336:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1338:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1342:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1344:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1348:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1350:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1354:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1356:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ In file included from /usr/include/boost/test/test_tools.hpp:45:0, from /usr/include/boost/test/unit_test.hpp:18, from /usr/include/boost/test/auto_unit_test.hpp:16, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:66, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testOptionsDeepCopy::test_method()’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1395:57: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] BOOST_CHECK_EQUAL(string(optsClone->GetFilterString()), string("L;m;")); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/util_misc.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: blasthits_unit_test.o: undefined reference to symbol 'Blast_HSPListFree' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp -o blasthits_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blasthits_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blasthits_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blasthits_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o blasthits_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blasthits_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f blasthits_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/blasthits_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=delta_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=delta_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: blastoptions_unit_test.o: undefined reference to symbol 'BlastHitSavingParametersFree' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastoptions_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastoptions_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastoptions_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o blastoptions_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastoptions_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f blastoptions_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/blastoptions_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gapinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=gapinfo_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gapinfo_unit_test.o: In function `gapinfo::testGapEditScriptNew::test_method()': ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:44: undefined reference to `GapEditScriptNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:46: undefined reference to `GapEditScriptDelete' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:48: undefined reference to `GapEditScriptNew' gapinfo_unit_test.o: In function `gapinfo::testGapEditScriptDup::test_method()': ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:57: undefined reference to `GapEditScriptNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:64: undefined reference to `GapEditScriptDup' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:71: undefined reference to `GapEditScriptDelete' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:72: undefined reference to `GapEditScriptDelete' collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp -o gapinfo_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gapinfo_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxncbi -ldl -lm -lpthread -o gapinfo_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gapinfo_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxblast -lxalgowinmask -lblast_services -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lxnetblast -lxobjmgr -lxobjread -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lnsl -ldl -lm -lpthread -o gapinfo_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gapinfo_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f gapinfo_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/gapinfo_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gencode_singleton_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=gencode_singleton_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/sseqloc.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: blastfilter_unit_test.o: undefined reference to symbol 'BlastSetUp_GetFilteringLocations' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp -o blastfilter_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastfilter_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastfilter_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastfilter_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o blastfilter_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastfilter_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f blastfilter_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/blastfilter_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=hspfilter_besthit_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_besthit_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp -o delta_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie delta_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o delta_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f delta_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f delta_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/delta_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=hspfilter_culling_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_culling_unit_test -w -j --jobserver-fds=3,4 all /usr/bin/ld: blastsetup_unit_test.o: undefined reference to symbol 'Blast_KarlinBlkNew' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp -o blastsetup_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastsetup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastsetup_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastsetup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o blastsetup_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastsetup_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f blastsetup_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/blastsetup_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=hspstream_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=hspstream_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:42: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: gencode_singleton_unit_test.o: undefined reference to symbol 'GenCodeSingletonAdd' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gencode_singleton_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o gencode_singleton_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gencode_singleton_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o gencode_singleton_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gencode_singleton_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f gencode_singleton_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/gencode_singleton_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' hspfilter_besthit_unit_test.o: In function `s_GetBestHitParams()': ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:51: undefined reference to `BlastHitSavingOptionsNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:53: undefined reference to `BlastHSPBestHitOptionsNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:55: undefined reference to `BlastHSPBestHitParamsNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:56: undefined reference to `BlastHSPBestHitOptionsFree' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:58: undefined reference to `BlastHitSavingOptionsFree' hspfilter_besthit_unit_test.o: In function `hspfilter_best_hit::HSPBestHitParams::test_method()': ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:76: undefined reference to `BlastHSPBestHitParamsFree' hspfilter_besthit_unit_test.o: In function `hspfilter_best_hit::HSPBestHitWriter::test_method()': ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:86: undefined reference to `BlastHSPBestHitInfoNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:90: undefined reference to `BlastHSPWriterNew' hspfilter_besthit_unit_test.o: In function `hspfilter_best_hit::HSPBestHitPipe::test_method()': ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:103: undefined reference to `BlastHSPBestHitPipeInfoNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:107: undefined reference to `BlastHSPPipeNew' collect2: error: ld returned 1 exit status hspfilter_culling_unit_test.o: In function `s_GetCullingParams()': ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:51: undefined reference to `BlastHitSavingOptionsNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:52: undefined reference to `BlastHSPCullingOptionsNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:54: undefined reference to `BlastHSPCullingParamsNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:55: undefined reference to `BlastHSPCullingOptionsFree' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:57: undefined reference to `BlastHitSavingOptionsFree' hspfilter_culling_unit_test.o: In function `hspfilter_culling::HSPCullingParams::test_method()': ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:77: undefined reference to `BlastHSPCullingParamsFree' hspfilter_culling_unit_test.o: In function `hspfilter_culling::HSPCullingWriter::test_method()': ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:87: undefined reference to `BlastHSPCullingInfoNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:91: undefined reference to `BlastHSPWriterNew' hspfilter_culling_unit_test.o: In function `hspfilter_culling::HSPCullingPipe::test_method()': ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:104: undefined reference to `BlastHSPCullingPipeInfoNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:108: undefined reference to `BlastHSPPipeNew' collect2: error: ld returned 1 exit status In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbithr.hpp:46, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/hspstream_test_util.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=linkhsp_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=linkhsp_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp -o hspfilter_besthit_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspfilter_besthit_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o hspfilter_besthit_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspfilter_besthit_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o hspfilter_besthit_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_besthit_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f hspfilter_besthit_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/hspfilter_besthit_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=magicblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=magicblast_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp -o hspfilter_culling_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspfilter_culling_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o hspfilter_culling_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspfilter_culling_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o hspfilter_culling_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_culling_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f hspfilter_culling_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/hspfilter_culling_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=msa2pssm_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=msa2pssm_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:32: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ld: hspstream_unit_test.o: undefined reference to symbol 'Blast_HSPListFree' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspstream_unit_test.o hspstream_test_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o hspstream_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspstream_unit_test.o hspstream_test_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o hspstream_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspstream_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f hspstream_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/hspstream_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=ntlookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=ntlookup_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: msa2pssm_unit_test.o: undefined reference to symbol 'PSIBlastOptionsNew' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp -o msa2pssm_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie msa2pssm_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o msa2pssm_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie msa2pssm_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o msa2pssm_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f msa2pssm_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f msa2pssm_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/msa2pssm_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=ntscan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=ntscan_unit_test -w -j --jobserver-fds=3,4 all /usr/bin/ld: linkhsp_unit_test.o: undefined reference to symbol 'Blast_HSPListFree' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie linkhsp_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o linkhsp_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie linkhsp_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o linkhsp_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f linkhsp_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f linkhsp_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/linkhsp_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=optionshandle_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=optionshandle_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp -o magicblast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie magicblast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -lm -lpthread -o magicblast_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f magicblast_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f magicblast_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/magicblast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=phiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=phiblast_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: ntlookup_unit_test.o: undefined reference to symbol 'iexp' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp -o ntlookup_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie ntlookup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o ntlookup_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie ntlookup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o ntlookup_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntlookup_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f ntlookup_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/ntlookup_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=prelimsearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=prelimsearch_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: phiblast_unit_test.o: undefined reference to symbol 'PHIBlast_HSPResultsSplit' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp -o phiblast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie phiblast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o phiblast_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie phiblast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o phiblast_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f phiblast_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f phiblast_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/phiblast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psibl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=psibl2seq_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: ntscan_unit_test.o: undefined reference to symbol 'BlastExtendWordNew' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp -o ntscan_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie ntscan_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o ntscan_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie ntscan_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o ntscan_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntscan_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f ntscan_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/ntscan_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psiblast_iteration_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=psiblast_iteration_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp -o optionshandle_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie optionshandle_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o optionshandle_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f optionshandle_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f optionshandle_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/optionshandle_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=psiblast_unit_test -w -j --jobserver-fds=3,4 all /usr/bin/ld: prelimsearch_unit_test.o: undefined reference to symbol 'Blast_HSPResultsFree' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp -o prelimsearch_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie prelimsearch_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o prelimsearch_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie prelimsearch_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o prelimsearch_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f prelimsearch_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f prelimsearch_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/prelimsearch_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=pssmcreate_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=pssmcreate_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:40: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp -o psiblast_iteration_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_iteration_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o psiblast_iteration_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_iteration_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f psiblast_iteration_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/psiblast_iteration_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=pssmenginefreqratios_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=pssmenginefreqratios_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp -o psibl2seq_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psibl2seq_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o psibl2seq_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psibl2seq_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f psibl2seq_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/psibl2seq_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=querydata_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=querydata_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: pssmenginefreqratios_unit_test.o: undefined reference to symbol 'kPSSM_NoImpalaScaling' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie pssmenginefreqratios_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o pssmenginefreqratios_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie pssmenginefreqratios_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o pssmenginefreqratios_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmenginefreqratios_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f pssmenginefreqratios_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/pssmenginefreqratios_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=queryinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=queryinfo_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ld: psiblast_unit_test.o: undefined reference to symbol 'PSIDiagnosticsRequestNew' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp -o psiblast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o psiblast_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lxobjsimple -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqalign_util -lseqset -ltaxon1 -ltaxon3 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxconnect -lxser -lconnect -lgene_info -lsequtil -ltest_boost -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o psiblast_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f psiblast_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/psiblast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=redoalignment_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=redoalignment_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ld: querydata_unit_test.o: undefined reference to symbol 'NCBI4NA_TO_BLASTNA' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie querydata_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o querydata_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie querydata_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o querydata_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f querydata_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f querydata_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/querydata_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=remote_blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=remote_blast_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/services/blast_services.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: queryinfo_unit_test.o: undefined reference to symbol 'Blast_GetQueryIndexFromQueryOffset' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie queryinfo_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o queryinfo_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie queryinfo_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o queryinfo_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f queryinfo_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f queryinfo_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/queryinfo_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=rps_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=rps_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Std_seg_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Std_seg.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: redoalignment_unit_test.o: undefined reference to symbol 'Blast_HSPListFree' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp -o redoalignment_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie redoalignment_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o redoalignment_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie redoalignment_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lblastinput -lxblastformat -lalign_format -lxblast -lxobjsimple -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -ltaxon3 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxconnect -lxser -lconnect -lgene_info -lsequtil -ltest_boost -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o redoalignment_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f redoalignment_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f redoalignment_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/redoalignment_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=scoreblk_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=scoreblk_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: pssmcreate_unit_test.o: undefined reference to symbol 'kQueryIndex' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp -o pssmcreate_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp -o pssm_test_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp -o pssmcreate_cdd_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie pssmcreate_unit_test.o pssm_test_util.o pssmcreate_cdd_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o pssmcreate_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie pssmcreate_unit_test.o pssm_test_util.o pssmcreate_cdd_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o pssmcreate_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmcreate_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f pssmcreate_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/pssmcreate_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=search_strategy_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=search_strategy_unit_test -w -j --jobserver-fds=3,4 all /usr/bin/ld: rps_unit_test.o: undefined reference to symbol 'BlastSeqSrcFree' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp -o rps_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rps_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o rps_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rps_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o rps_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f rps_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f rps_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/rps_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqinfosrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=seqinfosrc_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/remote_blast.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/search_strategy.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ld: scoreblk_unit_test.o: undefined reference to symbol 'Blast_KarlinBlkNew' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/seqinfosrc_seqvec.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp -o scoreblk_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie scoreblk_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o scoreblk_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie scoreblk_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o scoreblk_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f scoreblk_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f scoreblk_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/scoreblk_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqsrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=seqsrc_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp -o remote_blast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie remote_blast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o remote_blast_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f remote_blast_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f remote_blast_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/remote_blast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=setupfactory_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=setupfactory_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp -o seqinfosrc_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqinfosrc_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o seqinfosrc_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqinfosrc_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f seqinfosrc_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/seqinfosrc_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=split_query_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=split_query_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie search_strategy_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o search_strategy_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f search_strategy_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f search_strategy_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/search_strategy_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=stat_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=stat_unit_test -w -j --jobserver-fds=3,4 all /usr/bin/ld: setupfactory_unit_test.o: undefined reference to symbol 'BlastScoreBlkFree' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp -o setupfactory_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie setupfactory_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o setupfactory_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie setupfactory_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o setupfactory_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f setupfactory_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f setupfactory_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/setupfactory_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=subj_ranges_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=subj_ranges_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/random_gen.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/seqsrc_mock.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/subj_ranges_set.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/subj_ranges_set.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ stat_unit_test.o: In function `stats::EvalueForProteinFSC::test_method()': ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp:60: undefined reference to `Blast_KarlinBlkNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp:63: undefined reference to `Blast_KarlinBlkGappedCalc' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp:64: undefined reference to `Blast_GumbelBlkCalc' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp:67: undefined reference to `BLAST_SpougeStoE' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp:71: undefined reference to `Blast_KarlinBlkFree' collect2: error: ld returned 1 exit status In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp -o stat_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie stat_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o stat_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie stat_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o stat_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f stat_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f stat_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/stat_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=traceback_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp -o subj_ranges_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie subj_ranges_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o subj_ranges_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f subj_ranges_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f subj_ranges_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/subj_ranges_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=tracebacksearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=tracebacksearch_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/traceback_stage.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: split_query_unit_test.o: undefined reference to symbol 'kInvalidContext' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp -o split_query_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie split_query_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o split_query_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie split_query_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o split_query_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f split_query_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f split_query_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/split_query_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=uniform_search_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=uniform_search_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: traceback_unit_test.o: undefined reference to symbol 'BlastHSPStreamNew' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp -o traceback_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie traceback_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o traceback_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie traceback_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o traceback_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f traceback_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f traceback_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/traceback_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=version_reference_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=version_reference_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ld: tracebacksearch_unit_test.o: undefined reference to symbol 'BlastHSPStreamNew' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp -o tracebacksearch_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tracebacksearch_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o tracebacksearch_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tracebacksearch_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o tracebacksearch_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f tracebacksearch_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f tracebacksearch_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/tracebacksearch_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/blast_format TMPL=blast_format_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: seqsrc_unit_test.o: undefined reference to symbol 'BlastSeqSrcIteratorNew' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp -o mockseqsrc2_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqsrc_unit_test.o seqsrc_mock.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o seqsrc_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,/usr/bin/ld: version_reference_unit_test.o: undefined reference to symbol 'kBlastMinorVersion' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status --enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqsrc_unit_test.o seqsrc_mock.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o seqsrc_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqsrc_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f seqsrc_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/seqsrc_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=bdbloader_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/blastdb TMPL=bdbloader_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp -o version_reference_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie version_reference_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o version_reference_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie version_reference_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -ltest_boost -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o version_reference_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f version_reference_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f version_reference_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/version_reference_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_formatter LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast TMPL=blast_formatter -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp -o uniform_search_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie uniform_search_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o uniform_search_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f uniform_search_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f uniform_search_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/uniform_search_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/blast_formatter.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast TMPL=blastn -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/blast_formatter.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/blastn_app.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/blastn_app.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:40: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include -I../ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp -o bdbloader_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie bdbloader_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o bdbloader_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f bdbloader_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f bdbloader_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/bdbloader_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast TMPL=blastp -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/blastp_app.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ld: blastn_app.o: undefined reference to symbol 'kBlastMinorVersion' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/blastp_app.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: blast_formatter.o: undefined reference to symbol 'kBlastMinorVersion' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/blastn_app.cpp -o blastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_app_util -lxformat -lxcleanup -lvalid -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lsubmit -lxregexp -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastn The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -ltaxon3 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxconnect -lxser -lconnect -lgene_info -lsequtil -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blastn /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f blastn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/blastn make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast TMPL=blastx -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blast_formatter The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -ltaxon3 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxconnect -lxser -lconnect -lgene_info -lsequtil -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blast_formatter /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f blast_formatter /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/blast_formatter make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=deltablast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast TMPL=deltablast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/blastx_app.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/blastx_app.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/deltablast_app.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/deltablast.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/deltablast_app.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:40: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: blastp_app.o: undefined reference to symbol 'kBlastMinorVersion' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastp_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastp The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastp_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -ltaxon3 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxconnect -lxser -lconnect -lgene_info -lsequtil -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blastp /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f blastp /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/blastp make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psiblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast TMPL=psiblast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/psiblast_app.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ld: blastx_app.o: undefined reference to symbol 'kBlastMinorVersion' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/psiblast_app.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastx The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -ltaxon3 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxconnect -lxser -lconnect -lgene_info -lsequtil -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blastx /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f blastx /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/blastx make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=rpsblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast TMPL=rpsblast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:40: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/rpsblast_app.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/rpsblast_app.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: deltablast_app.o: undefined reference to symbol 'kBlastMinorVersion' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie deltablast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o deltablast The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie deltablast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -ltaxon3 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxconnect -lxser -lconnect -lgene_info -lsequtil -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o deltablast /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f deltablast /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/deltablast make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=rpstblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast TMPL=rpstblastn -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/rpstblastn_app.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/rpstblastn_app.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqalignfilter_unit_test.o blastfmtutil_unit_test.o build_archive_unit_test.o vecscreen_run_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o blast_format_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_format_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f blast_format_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/blast_format_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seedtop LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast TMPL=seedtop -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/seedtop_app.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/seedtop.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/seedtop_app.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: rpsblast_app.o: undefined reference to symbol 'kBlastMinorVersion' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status /usr/bin/ld: psiblast_app.o: undefined reference to symbol 'kBlastMinorVersion' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rpsblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o rpsblast The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rpsblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -ltaxon3 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxconnect -lxser -lconnect -lgene_info -lsequtil -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o rpsblast /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f rpsblast /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/rpsblast make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=tblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast TMPL=tblastn -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o psiblast The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -ltaxon3 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxconnect -lxser -lconnect -lgene_info -lsequtil -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o psiblast /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f psiblast /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/psiblast make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=tblastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast TMPL=tblastx -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/tblastn_app.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/tblastx_app.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/tblastn_app.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/tblastx_app.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: rpstblastn_app.o: undefined reference to symbol 'kBlastMinorVersion' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rpstblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o rpstblastn The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rpstblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -ltaxon3 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxconnect -lxser -lconnect -lgene_info -lsequtil -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o rpstblastn /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f rpstblastn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/rpstblastn make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdb_aliastool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/blastdb_aliastool.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/blastdb_aliastool.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: seedtop_app.o: undefined reference to symbol 'kBlastMinorVersion' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seedtop_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o seedtop The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seedtop_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -ltaxon3 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxconnect -lxser -lconnect -lgene_info -lsequtil -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o seedtop /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f seedtop /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/seedtop make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdbcheck LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb TMPL=blastdbcheck -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/blastdbcheck.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ld: tblastx_app.o: undefined reference to symbol 'kBlastMinorVersion' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/blastdbcheck.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tblastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o tblastx The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tblastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -ltaxon3 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxconnect -lxser -lconnect -lgene_info -lsequtil -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o tblastx /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f tblastx /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/tblastx make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdbcmd LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb TMPL=blastdbcmd -w -j --jobserver-fds=3,4 all /usr/bin/ld: tblastn_app.o: undefined reference to symbol 'kBlastMinorVersion' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status /usr/bin/ld: blastdb_aliastool.o: undefined reference to symbol 'kBlastMinorVersion' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o tblastn The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -ltaxon3 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxconnect -lxser -lconnect -lgene_info -lsequtil -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o tblastn /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f tblastn /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/tblastn make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdbcp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb TMPL=blastdbcp -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/blastdbcmd.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdb_aliastool.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastdb_aliastool The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdb_aliastool.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lwritedb -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -ltaxon3 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxconnect -lxser -lconnect -lgene_info -lsequtil -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blastdb_aliastool /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f blastdb_aliastool /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/blastdb_aliastool make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=convert2blastmask LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb TMPL=convert2blastmask -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/blastdbcmd.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/blastdbcp.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/blastdbcheck.cpp: In member function ‘int CAliasTest::DoTest(const string&, TSeen&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/blastdbcheck.cpp:720:72: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*line, " \t\n\r", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/blastdbcheck.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/blastdbcheck.cpp: In member function ‘virtual bool CDbTest::Test(CTestActionList&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/blastdbcheck.cpp:941:54: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(m_Db, " ", dbs, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/blastdbcheck.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/build_db.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/blastdbcp.cpp:33: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/convert2blastmask.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/convert2blastmask.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/blastdbcmd.cpp: In member function ‘int CBlastDBCmdApp::x_ProcessBatchEntry(const ncbi::CArgs&, ncbi::CSeqFormatter&)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/blastdbcmd.cpp:441:13: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if(queries.empty()) ^~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/blastdbcmd.cpp:444:13: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ TSeqRange seq_range(TSeqRange::GetEmpty()); ^~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastdbcp /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f blastdbcp /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/blastdbcp make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=makeblastdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb TMPL=makeblastdb -w -j --jobserver-fds=3,4 all /usr/bin/ld: blastdbcheck.o: undefined reference to symbol 'kBlastMinorVersion' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status convert2blastmask.o: In function `ncbi::CObjectCounterLocker::Unlock(ncbi::CObject const*) const': ./c++/BUILD/build/app/blastdb/./c++/include/corelib/ncbiobj.hpp:533: undefined reference to `kBlastMajorVersion' ./c++/BUILD/build/app/blastdb/./c++/include/corelib/ncbiobj.hpp:533: undefined reference to `kBlastMinorVersion' ./c++/BUILD/build/app/blastdb/./c++/include/corelib/ncbiobj.hpp:533: undefined reference to `kBlastPatchVersion' collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcheck.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastdbcheck The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcheck.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -ltaxon3 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxconnect -lxser -lconnect -lgene_info -lsequtil -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blastdbcheck /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f blastdbcheck /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/blastdbcheck make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie convert2blastmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o convert2blastmask The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie convert2blastmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxblast -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o convert2blastmask /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f convert2blastmask /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/convert2blastmask make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=makeprofiledb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb TMPL=makeprofiledb -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/version.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/version.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/makeblastdb.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/makeblastdb.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/build_db.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/masked_range_set.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/masked_range_set.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/makeprofiledb.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/blast/seqdb_writer/build_db.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/masked_range_set.hpp:33, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/masked_range_set.cpp:31: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: blastdbcmd.o: undefined reference to symbol 'kBlastMinorVersion' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/objistrasn.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/makeprofiledb.cpp:40: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcmd.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastdbcmd The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcmd.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -ltaxon3 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxconnect -lxser -lconnect -lgene_info -lsequtil -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blastdbcmd /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f blastdbcmd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/blastdbcmd make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' cd app/segmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=segmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/segmasker' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/segmasker TMPL=segmasker -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/segmasker/segmasker.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/segmasker/segmasker.cpp:38: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/makeblastdb.cpp: In member function ‘void CMakeBlastDBApp::x_BuildDatabase()’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/makeblastdb.cpp:1118:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (bytes >= (1L << 31)) { ~~~~~~^~~~~~~~~~~~~ /usr/bin/ld: segmasker.o: undefined reference to symbol 'kSegWindow' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/segmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie segmasker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxobjsimple -lxalgosegmask -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o segmasker The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie segmasker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxalgosegmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnect -lxser -lconnect -lsequtil -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lz -ldl -lm -lpthread -o segmasker /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f segmasker /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/segmasker make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/segmasker' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/segmasker' cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastinput_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=bl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/unit_test TMPL=blastinput_unit_test -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=bl2seq_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/object_manager.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:34: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ld: makeprofiledb.o: undefined reference to symbol 'kPSSM_NoImpalaScaling' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:36: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie makeprofiledb.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o makeprofiledb The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie makeprofiledb.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lwritedb -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -ltaxon3 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxconnect -lxser -lconnect -lgene_info -lsequtil -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o makeprofiledb /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f makeprofiledb /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/makeprofiledb make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/ld: makeblastdb.o: undefined reference to symbol 'kBlastMinorVersion' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie makeblastdb.o masked_range_set.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o makeblastdb The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie makeblastdb.o masked_range_set.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lwritedb -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -ltaxon3 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxconnect -lxser -lconnect -lgene_info -lsequtil -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o makeblastdb /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f makeblastdb /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/makeblastdb make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:35: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:39: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n < numeric_limits::min() || n > numeric_limits::max()) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/algo/blast/blastinput/blast_scope_src.hpp:43, from /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:37: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ blast_unit_test.o: In function `blast::SSeqRangeIntersect::test_method()': ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:48: undefined reference to `SSeqRangeNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:49: undefined reference to `SSeqRangeNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:56: undefined reference to `SSeqRangeNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:57: undefined reference to `SSeqRangeNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:60: undefined reference to `SSeqRangeNew' blast_unit_test.o:./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:61: more undefined references to `SSeqRangeNew' follow blast_unit_test.o: In function `blast::SSeqRange_TestLowerBound::test_method()': ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:102: undefined reference to `SSeqRangeArrayLessThanOrEqual' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:105: undefined reference to `SSeqRangeArrayLessThanOrEqual' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:108: undefined reference to `SSeqRangeArrayLessThanOrEqual' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:111: undefined reference to `SSeqRangeArrayLessThanOrEqual' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:114: undefined reference to `SSeqRangeArrayLessThanOrEqual' blast_unit_test.o: In function `blast::SSeqRange_RangeSelection::test_method()': ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:121: undefined reference to `SSeqRangeNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:122: undefined reference to `SSeqRangeNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:123: undefined reference to `SSeqRangeNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:124: undefined reference to `SSeqRangeNew' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:125: undefined reference to `SSeqRangeNew' blast_unit_test.o:./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:126: more undefined references to `SSeqRangeNew' follow blast_unit_test.o: In function `blast::SSeqRange_RangeSelection::test_method()': ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:131: undefined reference to `SSeqRangeArrayLessThanOrEqual' ./c++/BUILD/build/algo/blast/unit_tests/api/./c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:135: undefined reference to `SSeqRangeArrayLessThanOrEqual' collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp -o blast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blast_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lblastinput -lxblastformat -lalign_format -lxblast -lxobjsimple -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -ltaxon3 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxconnect -lxser -lconnect -lgene_info -lsequtil -ltest_boost -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blast_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f blast_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/blast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/ld: bl2seq_unit_test.o: undefined reference to symbol 'kBlastErrMsg_CantCalculateUngappedKAParams' /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib/libblast.so: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp -o bl2seq_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie bl2seq_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o bl2seq_unit_test The original settings failed. Trying project_tree_builder's suggestions: /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie bl2seq_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -lblast_unit_test_util -lblastinput -lxblastformat -lalign_format -lxblast -lxobjsimple -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -ltaxon3 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lxcgi -lxcompress -lxconnect -lxser -lconnect -lgene_info -lsequtil -ltest_boost -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lblast -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o bl2seq_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f bl2seq_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f bl2seq_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/bl2seq_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/blastinput/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp -o blastinput_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp -o blast_scope_src_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastinput_unit_test.o blast_scope_src_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -L/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/lib -ltest_boost -lentrez2cli -lentrez2 -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastinput_unit_test /bin/bash /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastinput_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin /bin/ln -f blastinput_unit_test /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/bin/blastinput_unit_test make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/blastinput/unit_test' make[3]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build' make[2]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build' make[1]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0' debian/rules override_dh_auto_test make[1]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0' dh_auto_test /usr/bin/make -j1 check VERBOSE=1 make[2]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++' if test -s ""; then \ cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build && /usr/bin/make -w check_p RUN_CHECK=Y; \ else \ cd /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build && /usr/bin/make -w check_r RUN_CHECK=Y; \ fi make[3]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build' ====================================================================== make[4]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build' /usr/bin/make -C corelib -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/corelib' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/corelib' /usr/bin/make -C util -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util' /usr/bin/make -C regexp -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/regexp' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/regexp TMPL=regexp -w mark-as-disabled make[8]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/regexp' make[8]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/regexp' make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/regexp' make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/regexp' /usr/bin/make -C xregexp -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/xregexp' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/xregexp' /usr/bin/make -C compress -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/compress' /usr/bin/make -C bzip2 -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/compress/bzip2' NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 make[8]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/compress/bzip2' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/bzip2 TMPL=bzip2 -w mark-as-disabled make[9]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/compress/bzip2' make[9]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/compress/bzip2' make[8]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/compress/bzip2' make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/compress/bzip2' /usr/bin/make -C zlib -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/compress/zlib' NOTE: Skipping project zlib due to unmet requirements: LocalZ make[8]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/compress/zlib' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/util/compress/zlib TMPL=zlib -w mark-as-disabled make[9]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/compress/zlib' make[9]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/compress/zlib' make[8]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/compress/zlib' make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/compress/zlib' /usr/bin/make -C api -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/compress/api' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/compress/api' make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/compress' /bin/echo 'Warning: non-existent sub-project "diff"' Warning: non-existent sub-project "diff" /bin/echo 'Warning: non-existent sub-project "image"' Warning: non-existent sub-project "image" /usr/bin/make -C tables -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/tables' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/tables' /usr/bin/make -C creaders -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/creaders' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/creaders' /usr/bin/make -C sequtil -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/sequtil' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/sequtil' /usr/bin/make -C bitset -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/bitset' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util/bitset' /bin/echo 'Warning: non-existent sub-project "qparse"' Warning: non-existent sub-project "qparse" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/util' /usr/bin/make -C connect -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/connect' /usr/bin/make -C services -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/connect/services' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/connect/services' /bin/echo 'Warning: non-existent sub-project "ext"' Warning: non-existent sub-project "ext" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "daemons"' Warning: non-existent sub-project "daemons" make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/connect' /usr/bin/make -C cgi -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/cgi' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/cgi' /usr/bin/make -C html -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/html' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/html' /usr/bin/make -C build-system -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/build-system' /usr/bin/make -C helpers -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/build-system/helpers' SKIP -- build-system/helpers/run_with_lock make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/build-system/helpers' /usr/bin/make -C project_tree_builder -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/build-system/project_tree_builder' SKIP -- build-system/project_tree_builder/project_tree_builder /usr/bin/make -C msbuild -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' NOTE: Skipping project msbuild due to unmet requirements: MSWin make[8]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' /usr/bin/make -f /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w mark-as-disabled make[9]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[9]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[8]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/build-system/project_tree_builder' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/build-system' /usr/bin/make -C serial -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/serial' /usr/bin/make -C datatool -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/serial/datatool' TEST -- serial/datatool/datatool make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/serial/datatool' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "soap"' Warning: non-existent sub-project "soap" make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/serial' /bin/echo 'Warning: non-existent sub-project "db"' Warning: non-existent sub-project "db" /bin/echo 'Warning: non-existent sub-project "dbapi"' Warning: non-existent sub-project "dbapi" /usr/bin/make -C objects -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects' /usr/bin/make -C general -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/general' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/general' /usr/bin/make -C biblio -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/biblio' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/biblio' /usr/bin/make -C medline -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/medline' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/medline' /usr/bin/make -C pub -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/pub' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/pub' /usr/bin/make -C seqcode -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqcode' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqcode' /usr/bin/make -C seq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seq' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seq' /usr/bin/make -C seqset -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqset' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqset' /usr/bin/make -C submit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/submit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/submit' /usr/bin/make -C seqedit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqedit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqedit' /usr/bin/make -C seqsplit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqsplit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqsplit' /usr/bin/make -C id1 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/id1' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/id1' /usr/bin/make -C id2 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/id2' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/id2' /usr/bin/make -C entrez2 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/entrez2' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/entrez2' /usr/bin/make -C pubmed -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/pubmed' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/pubmed' /usr/bin/make -C medlars -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/medlars' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/medlars' /usr/bin/make -C mla -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/mla' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/mla' /usr/bin/make -C proj -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/proj' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/proj' /usr/bin/make -C scoremat -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/scoremat' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/scoremat' /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blast' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blast' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastdb' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastdb' /usr/bin/make -C blastxml -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastxml' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastxml' /usr/bin/make -C blastxml2 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastxml2' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/blastxml2' /usr/bin/make -C mmdb -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/mmdb' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/mmdb' /usr/bin/make -C cn3d -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/cn3d' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/cn3d' /usr/bin/make -C cdd -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/cdd' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/cdd' /usr/bin/make -C ncbimime -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/ncbimime' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/ncbimime' /usr/bin/make -C pcsubstance -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/pcsubstance' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/pcsubstance' /usr/bin/make -C pcassay -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/pcassay' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/pcassay' /usr/bin/make -C gbseq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/gbseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/gbseq' /usr/bin/make -C insdseq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/insdseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/insdseq' /usr/bin/make -C tinyseq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/tinyseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/tinyseq' /usr/bin/make -C biotree -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/biotree' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/biotree' /usr/bin/make -C entrezgene -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/entrezgene' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/entrezgene' /usr/bin/make -C omssa -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/omssa' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/omssa' /usr/bin/make -C remap -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/remap' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/remap' /usr/bin/make -C seqtest -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqtest' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/seqtest' /usr/bin/make -C taxon1 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/taxon1' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/taxon1' /usr/bin/make -C taxon3 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/taxon3' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/taxon3' /usr/bin/make -C gbproj -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/gbproj' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/gbproj' /usr/bin/make -C trackmgr -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/trackmgr' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/trackmgr' /usr/bin/make -C valerr -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/valerr' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/valerr' /usr/bin/make -C valid -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/valid' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/valid' /usr/bin/make -C access -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/access' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/access' /usr/bin/make -C docsum -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/docsum' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/docsum' /usr/bin/make -C featdef -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/featdef' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/featdef' /usr/bin/make -C genomecoll -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/genomecoll' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/genomecoll' /usr/bin/make -C homologene -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/homologene' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/homologene' /usr/bin/make -C mim -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/mim' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/mim' /usr/bin/make -C objprt -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/objprt' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/objprt' /usr/bin/make -C variation -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/variation' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/variation' /usr/bin/make -C macro -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/macro' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/macro' /usr/bin/make -C genesbyloc -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/genesbyloc' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/genesbyloc' /usr/bin/make -C coords -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/coords' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/coords' /usr/bin/make -C varrep -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/varrep' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects/varrep' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objects' /usr/bin/make -C objmgr -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /usr/bin/make -C util -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr/util' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr/util' /usr/bin/make -C split -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr/split' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr/split' make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objmgr' /usr/bin/make -C objtools -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools' /bin/echo 'Warning: non-existent sub-project "unit_test_util"' Warning: non-existent sub-project "unit_test_util" /usr/bin/make -C readers -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/readers' /bin/echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/readers' /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast' /usr/bin/make -C seqdb_reader -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -C demo -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' SKIP -- objtools/blast/seqdb_reader/demo/seqdb_demo make[8]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/make -C test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' TEST -- objtools/blast/seqdb_reader/test/seqdb_perf make[8]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -C seqdb_writer -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' TEST -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test make[8]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -C gene_info_reader -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make -C demo -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' SKIP -- objtools/blast/gene_info_reader/demo/gene_info_reader make[8]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' TEST -- objtools/blast/gene_info_reader/unit_test/gene_info_unit_test make[8]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/gene_info_reader' /bin/echo 'Warning: non-existent sub-project "gene_info_writer"' Warning: non-existent sub-project "gene_info_writer" /usr/bin/make -C services -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/services' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/services/unit_test' SKIP -- objtools/blast/services/unit_test/blast_services_unit_test make[8]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/services/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/services' /usr/bin/make -C blastdb_format -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' TEST -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test make[8]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast/blastdb_format' make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/blast' /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" /usr/bin/make -C data_loaders -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders' /usr/bin/make -C genbank -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -C cache -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' /bin/echo 'Warning: non-existent sub-project "pubseq"' Warning: non-existent sub-project "pubseq" /usr/bin/make -C id2 -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make -C id1 -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' /bin/echo 'Warning: non-existent sub-project "pubseq2"' Warning: non-existent sub-project "pubseq2" /usr/bin/make -C gicache -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/genbank' /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" /usr/bin/make -C blastdb -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/blastdb' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders/blastdb' /bin/echo 'Warning: non-existent sub-project "patcher"' Warning: non-existent sub-project "patcher" /bin/echo 'Warning: non-existent sub-project "asn_cache"' Warning: non-existent sub-project "asn_cache" make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/data_loaders' /usr/bin/make -C simple -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/simple' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/simple' /usr/bin/make -C alnmgr -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/alnmgr' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/alnmgr' /bin/echo 'Warning: non-existent sub-project "cddalignview"' Warning: non-existent sub-project "cddalignview" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "manip"' Warning: non-existent sub-project "manip" /usr/bin/make -C cleanup -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/cleanup' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/cleanup' /usr/bin/make -C format -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/format' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/format' /usr/bin/make -C edit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/edit' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/edit' /bin/echo 'Warning: non-existent sub-project "validator"' Warning: non-existent sub-project "validator" /bin/echo 'Warning: non-existent sub-project "asniotest"' Warning: non-existent sub-project "asniotest" /bin/echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" /usr/bin/make -C seqmasks_io -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/seqmasks_io' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/seqmasks_io' /bin/echo 'Warning: non-existent sub-project "eutils"' Warning: non-existent sub-project "eutils" /usr/bin/make -C align_format -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/align_format' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/align_format/unit_test' TEST -- objtools/align_format/unit_test/align_format_unit_test make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/align_format/unit_test' make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools/align_format' /bin/echo 'Warning: non-existent sub-project "snputil"' Warning: non-existent sub-project "snputil" /bin/echo 'Warning: non-existent sub-project "uudutil"' Warning: non-existent sub-project "uudutil" /bin/echo 'Warning: non-existent sub-project "variation"' Warning: non-existent sub-project "variation" /bin/echo 'Warning: non-existent sub-project "writers"' Warning: non-existent sub-project "writers" make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/objtools' /bin/echo 'Warning: non-existent sub-project "ctools"' Warning: non-existent sub-project "ctools" /bin/echo 'Warning: non-existent sub-project "sra"' Warning: non-existent sub-project "sra" /usr/bin/make -C algo -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo' /usr/bin/make -C dustmask -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/dustmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/dustmask' /usr/bin/make -C winmask -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/winmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/winmask' /bin/echo 'Warning: non-existent sub-project "sequence"' Warning: non-existent sub-project "sequence" /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast' /usr/bin/make -C composition_adjustment -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/composition_adjustment' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make -C core -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/core' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/core' /usr/bin/make -C dbindex -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make -C makeindex -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/dbindex/makeindex' SKIP -- algo/blast/dbindex/makeindex/makeindex make[8]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/dbindex/makeindex' make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/dbindex' /bin/echo 'Warning: non-existent sub-project "dbindex_search"' Warning: non-existent sub-project "dbindex_search" /usr/bin/make -C api -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/api' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/api' /usr/bin/make -C format -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/format' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/format' /usr/bin/make -C blastinput -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/blastinput/unit_test' TEST -- algo/blast/blastinput/unit_test/blastinput_unit_test make[8]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/blastinput/unit_test' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/blastinput' /bin/echo 'Warning: non-existent sub-project "blast_sra_input"' Warning: non-existent sub-project "blast_sra_input" /usr/bin/make -C igblast -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/igblast' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/igblast' /bin/echo 'Warning: non-existent sub-project "gumbel_params"' Warning: non-existent sub-project "gumbel_params" /usr/bin/make -C unit_tests -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests' /usr/bin/make -C blast_format -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' TEST -- algo/blast/unit_tests/blast_format/blast_format_unit_test make[8]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' TEST -- algo/blast/unit_tests/blastdb/bdbloader_unit_test make[8]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/make -C seqdb_reader -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test make[8]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make -C api -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blast_unit_test TEST -- algo/blast/unit_tests/api/aalookup_unit_test TEST -- algo/blast/unit_tests/api/seqsrc_unit_test TEST -- algo/blast/unit_tests/api/delta_unit_test TEST -- algo/blast/unit_tests/api/ntlookup_unit_test TEST -- algo/blast/unit_tests/api/seqinfosrc_unit_test TEST -- algo/blast/unit_tests/api/setupfactory_unit_test TEST -- algo/blast/unit_tests/api/search_strategy_unit_test TEST -- algo/blast/unit_tests/api/redoalignment_unit_test TEST -- algo/blast/unit_tests/api/queryinfo_unit_test TEST -- algo/blast/unit_tests/api/querydata_unit_test TEST -- algo/blast/unit_tests/api/pssmenginefreqratios_unit_test TEST -- algo/blast/unit_tests/api/blastsetup_unit_test TEST -- algo/blast/unit_tests/api/blastextend_unit_test TEST -- algo/blast/unit_tests/api/blastdiag_unit_test TEST -- algo/blast/unit_tests/api/pssmcreate_unit_test TEST -- algo/blast/unit_tests/api/psiblast_iteration_unit_test TEST -- algo/blast/unit_tests/api/hspfilter_besthit_unit_test TEST -- algo/blast/unit_tests/api/hspfilter_culling_unit_test TEST -- algo/blast/unit_tests/api/optionshandle_unit_test TEST -- algo/blast/unit_tests/api/msa2pssm_unit_test TEST -- algo/blast/unit_tests/api/tracebacksearch_unit_test TEST -- algo/blast/unit_tests/api/traceback_unit_test TEST -- algo/blast/unit_tests/api/psibl2seq_unit_test TEST -- algo/blast/unit_tests/api/psiblast_unit_test TEST -- algo/blast/unit_tests/api/prelimsearch_unit_test TEST -- algo/blast/unit_tests/api/phiblast_unit_test TEST -- algo/blast/unit_tests/api/split_query_unit_test TEST -- algo/blast/unit_tests/api/scoreblk_unit_test TEST -- algo/blast/unit_tests/api/hspstream_unit_test TEST -- algo/blast/unit_tests/api/rps_unit_test TEST -- algo/blast/unit_tests/api/gapinfo_unit_test TEST -- algo/blast/unit_tests/api/blasthits_unit_test TEST -- algo/blast/unit_tests/api/linkhsp_unit_test TEST -- algo/blast/unit_tests/api/blastengine_unit_test TEST -- algo/blast/unit_tests/api/subj_ranges_unit_test TEST -- algo/blast/unit_tests/api/version_reference_unit_test TEST -- algo/blast/unit_tests/api/ntscan_unit_test TEST -- algo/blast/unit_tests/api/aascan_unit_test TEST -- algo/blast/unit_tests/api/remote_blast_unit_test TEST -- algo/blast/unit_tests/api/uniform_search_unit_test TEST -- algo/blast/unit_tests/api/blastfilter_unit_test TEST -- algo/blast/unit_tests/api/blastoptions_unit_test TEST -- algo/blast/unit_tests/api/gencode_singleton_unit_test TEST -- algo/blast/unit_tests/api/bl2seq_unit_test TEST -- algo/blast/unit_tests/api/stat_unit_test TEST -- algo/blast/unit_tests/api/magicblast_unit_test make[8]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api' make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests' make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast' /usr/bin/make -C segmask -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/segmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/segmask' /bin/echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" /bin/echo 'Warning: non-existent sub-project "structure"' Warning: non-existent sub-project "structure" /bin/echo 'Warning: non-existent sub-project "ms"' Warning: non-existent sub-project "ms" /bin/echo 'Warning: non-existent sub-project "gnomon"' Warning: non-existent sub-project "gnomon" /bin/echo 'Warning: non-existent sub-project "tree"' Warning: non-existent sub-project "tree" /bin/echo 'Warning: non-existent sub-project "phy_tree"' Warning: non-existent sub-project "phy_tree" /bin/echo 'Warning: non-existent sub-project "seqqa"' Warning: non-existent sub-project "seqqa" /bin/echo 'Warning: non-existent sub-project "cobalt"' Warning: non-existent sub-project "cobalt" /bin/echo 'Warning: non-existent sub-project "text"' Warning: non-existent sub-project "text" /bin/echo 'Warning: non-existent sub-project "volume_merge"' Warning: non-existent sub-project "volume_merge" /bin/echo 'Warning: non-existent sub-project "primer"' Warning: non-existent sub-project "primer" /bin/echo 'Warning: non-existent sub-project "id_mapper"' Warning: non-existent sub-project "id_mapper" make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo' /usr/bin/make -C misc -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/misc' /usr/bin/make -C third_party -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/misc/third_party' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/misc/third_party' /usr/bin/make -C third_party_static -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/misc/third_party_static' NOTE: Skipping project third_party_static due to unmet requirements: -DLL make[7]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/misc/third_party_static' make[7]: Nothing to be done for 'mark-as-disabled_r'. make[7]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/misc/third_party_static' make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/misc/third_party_static' /bin/echo 'Warning: non-existent sub-project "clog"' Warning: non-existent sub-project "clog" /bin/echo 'Warning: non-existent sub-project "grid_cgi"' Warning: non-existent sub-project "grid_cgi" /bin/echo 'Warning: non-existent sub-project "xmlwrapp"' Warning: non-existent sub-project "xmlwrapp" /bin/echo 'Warning: non-existent sub-project "eutils_client"' Warning: non-existent sub-project "eutils_client" /bin/echo 'Warning: non-existent sub-project "hydra_client"' Warning: non-existent sub-project "hydra_client" /bin/echo 'Warning: non-existent sub-project "discrepancy_report"' Warning: non-existent sub-project "discrepancy_report" /bin/echo 'Warning: non-existent sub-project "discrepancy"' Warning: non-existent sub-project "discrepancy" /bin/echo 'Warning: non-existent sub-project "xmlreaders"' Warning: non-existent sub-project "xmlreaders" /bin/echo 'Warning: non-existent sub-project "hgvs"' Warning: non-existent sub-project "hgvs" /bin/echo 'Warning: non-existent sub-project "netstorage"' Warning: non-existent sub-project "netstorage" /bin/echo 'Warning: non-existent sub-project "jsonwrapp"' Warning: non-existent sub-project "jsonwrapp" /bin/echo 'Warning: non-existent sub-project "biosample_util"' Warning: non-existent sub-project "biosample_util" /bin/echo 'Warning: non-existent sub-project "data_loaders_util"' Warning: non-existent sub-project "data_loaders_util" /bin/echo 'Warning: non-existent sub-project "lapackwrapp"' Warning: non-existent sub-project "lapackwrapp" /bin/echo 'Warning: non-existent sub-project "cgi_redirect"' Warning: non-existent sub-project "cgi_redirect" make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/misc' /bin/echo 'Warning: non-existent sub-project "gui"' Warning: non-existent sub-project "gui" /usr/bin/make -C app -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app' /bin/echo 'Warning: non-existent sub-project "asn2asn"' Warning: non-existent sub-project "asn2asn" /bin/echo 'Warning: non-existent sub-project "asn2fasta"' Warning: non-existent sub-project "asn2fasta" /bin/echo 'Warning: non-existent sub-project "asn2flat"' Warning: non-existent sub-project "asn2flat" /bin/echo 'Warning: non-existent sub-project "asnval"' Warning: non-existent sub-project "asnval" /bin/echo 'Warning: non-existent sub-project "asn_cleanup"' Warning: non-existent sub-project "asn_cleanup" /bin/echo 'Warning: non-existent sub-project "id1_fetch"' Warning: non-existent sub-project "id1_fetch" /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' SKIP -- app/blast/blastp SKIP -- app/blast/blastn SKIP -- app/blast/blastx SKIP -- app/blast/tblastn SKIP -- app/blast/tblastx SKIP -- app/blast/psiblast SKIP -- app/blast/rpsblast SKIP -- app/blast/rpstblastn SKIP -- app/blast/blast_formatter SKIP -- app/blast/deltablast SKIP -- app/blast/seedtop make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blast' /bin/echo 'Warning: non-existent sub-project "convert_seq"' Warning: non-existent sub-project "convert_seq" /bin/echo 'Warning: non-existent sub-project "nmer_repeats"' Warning: non-existent sub-project "nmer_repeats" /bin/echo 'Warning: non-existent sub-project "objmgr"' Warning: non-existent sub-project "objmgr" /bin/echo 'Warning: non-existent sub-project "gi2taxid"' Warning: non-existent sub-project "gi2taxid" /bin/echo 'Warning: non-existent sub-project "netschedule"' Warning: non-existent sub-project "netschedule" /bin/echo 'Warning: non-existent sub-project "grid"' Warning: non-existent sub-project "grid" /bin/echo 'Warning: non-existent sub-project "netstorage"' Warning: non-existent sub-project "netstorage" /bin/echo 'Warning: non-existent sub-project "igblast"' Warning: non-existent sub-project "igblast" /usr/bin/make -C winmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/winmasker' SKIP -- app/winmasker/winmasker make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/winmasker' /usr/bin/make -C dustmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/dustmasker' SKIP -- app/dustmasker/dustmasker make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/dustmasker' /usr/bin/make -C segmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/segmasker' SKIP -- app/segmasker/segmasker make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/segmasker' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcmd SKIP -- app/blastdb/makeblastdb SKIP -- app/blastdb/blastdb_aliastool SKIP -- app/blastdb/blastdbcheck SKIP -- app/blastdb/convert2blastmask SKIP -- app/blastdb/blastdbcp SKIP -- app/blastdb/makeprofiledb make[6]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app/blastdb' /bin/echo 'Warning: non-existent sub-project "vecscreen"' Warning: non-existent sub-project "vecscreen" /bin/echo 'Warning: non-existent sub-project "agpconvert"' Warning: non-existent sub-project "agpconvert" /bin/echo 'Warning: non-existent sub-project "id2_fetch"' Warning: non-existent sub-project "id2_fetch" /bin/echo 'Warning: non-existent sub-project "agp_validate"' Warning: non-existent sub-project "agp_validate" /bin/echo 'Warning: non-existent sub-project "objextract"' Warning: non-existent sub-project "objextract" /bin/echo 'Warning: non-existent sub-project "bdb_env_keeper"' Warning: non-existent sub-project "bdb_env_keeper" /bin/echo 'Warning: non-existent sub-project "nw_aligner"' Warning: non-existent sub-project "nw_aligner" /bin/echo 'Warning: non-existent sub-project "speedtest"' Warning: non-existent sub-project "speedtest" /bin/echo 'Warning: non-existent sub-project "idmapper"' Warning: non-existent sub-project "idmapper" /bin/echo 'Warning: non-existent sub-project "formatguess"' Warning: non-existent sub-project "formatguess" /bin/echo 'Warning: non-existent sub-project "multireader"' Warning: non-existent sub-project "multireader" /bin/echo 'Warning: non-existent sub-project "read_blast_result"' Warning: non-existent sub-project "read_blast_result" /bin/echo 'Warning: non-existent sub-project "splign"' Warning: non-existent sub-project "splign" /bin/echo 'Warning: non-existent sub-project "hfilter"' Warning: non-existent sub-project "hfilter" /bin/echo 'Warning: non-existent sub-project "annotwriter"' Warning: non-existent sub-project "annotwriter" /bin/echo 'Warning: non-existent sub-project "compart"' Warning: non-existent sub-project "compart" /bin/echo 'Warning: non-existent sub-project "streamtest"' Warning: non-existent sub-project "streamtest" /bin/echo 'Warning: non-existent sub-project "lds2_indexer"' Warning: non-existent sub-project "lds2_indexer" /bin/echo 'Warning: non-existent sub-project "discrepancy_report"' Warning: non-existent sub-project "discrepancy_report" /bin/echo 'Warning: non-existent sub-project "biosample_chk"' Warning: non-existent sub-project "biosample_chk" /bin/echo 'Warning: non-existent sub-project "gap_stats"' Warning: non-existent sub-project "gap_stats" /bin/echo 'Warning: non-existent sub-project "table2asn"' Warning: non-existent sub-project "table2asn" /bin/echo 'Warning: non-existent sub-project "srcchk"' Warning: non-existent sub-project "srcchk" /bin/echo 'Warning: non-existent sub-project "tableval"' Warning: non-existent sub-project "tableval" /bin/echo 'Warning: non-existent sub-project "ncbi_encrypt"' Warning: non-existent sub-project "ncbi_encrypt" /bin/echo 'Warning: non-existent sub-project "ssub_fork"' Warning: non-existent sub-project "ssub_fork" /bin/echo 'Warning: non-existent sub-project "asn_cache"' Warning: non-existent sub-project "asn_cache" /bin/echo 'Warning: non-existent sub-project "magicblast"' Warning: non-existent sub-project "magicblast" /bin/echo 'Warning: non-existent sub-project "split_cache"' Warning: non-existent sub-project "split_cache" /bin/echo 'Warning: non-existent sub-project "wig2table"' Warning: non-existent sub-project "wig2table" /bin/echo 'Warning: non-existent sub-project "netcache"' Warning: non-existent sub-project "netcache" /bin/echo 'Warning: non-existent sub-project "rmblastn"' Warning: non-existent sub-project "rmblastn" /bin/echo 'Warning: non-existent sub-project "dblb"' Warning: non-existent sub-project "dblb" /bin/echo 'Warning: non-existent sub-project "tls"' Warning: non-existent sub-project "tls" /bin/echo 'Warning: non-existent sub-project "idfetch"' Warning: non-existent sub-project "idfetch" make[5]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/app' /bin/echo 'Warning: non-existent sub-project "sample"' Warning: non-existent sub-project "sample" /bin/echo 'Warning: non-existent sub-project "internal"' Warning: non-existent sub-project "internal" make[4]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build' ---------------------------------------------------------------------- Building check script... SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf (unmet CHECK_REQUIRES) SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf (unmet CHECK_REQUIRES) SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf (unmet CHECK_REQUIRES) SKIP -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test (unmet CHECK_REQUIRES) SKIP -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test (unmet CHECK_REQUIRES) SKIP -- objtools/align_format/unit_test/align_format_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/blastinput/unit_test/blastinput_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/blast_format/blast_format_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/blastdb/bdbloader_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/aalookup_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/seqsrc_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/delta_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/ntlookup_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/seqinfosrc_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/setupfactory_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/search_strategy_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/redoalignment_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/queryinfo_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/querydata_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/pssmenginefreqratios_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastsetup_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastextend_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/pssmcreate_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/psiblast_iteration_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/hspfilter_besthit_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/hspfilter_culling_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/optionshandle_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/msa2pssm_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/tracebacksearch_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/traceback_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/psibl2seq_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/psiblast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/prelimsearch_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/phiblast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/split_query_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/scoreblk_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/hspstream_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/rps_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/gapinfo_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blasthits_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/linkhsp_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastengine_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/subj_ranges_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/version_reference_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/ntscan_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/remote_blast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/uniform_search_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastfilter_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastoptions_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/gencode_singleton_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/bl2seq_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/stat_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/magicblast_unit_test (unmet CHECK_REQUIRES) Done. OK -- [serial/datatool] datatool.sh (real 0.58, user 0.36, sys 0.03) SKP -- [serial/datatool] datatool_xml.sh OK -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test (real 0.03, user 0.00, sys 0.01) OK -- [algo/blast/unit_tests/api] blastdiag_unit_test (real 0.04, user 0.02, sys 0.00) ERR [201] -- [algo/blast/unit_tests/api] aascan_unit_test (real 33.12, user 0.09, sys 0.02) Succeeded : 3 Timeout : 0 Failed : 1 Absent : 1 /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/build-system/Makefile.meta_r:46: recipe for target 'check_r.real' failed make[3]: *** [check_r.real] Error 7 make[3]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build' Makefile:33: recipe for target 'check' failed make[2]: *** [check] Error 2 make[2]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++' dh_auto_test: /usr/bin/make -j1 check VERBOSE=1 returned exit code 2 debian/rules:60: recipe for target 'override_dh_auto_test' failed make[1]: [override_dh_auto_test] Error 2 (ignored) c++/BUILD/build/check.sh concat_err cat c++/BUILD/build/check.sh.out_err ERR [201] -- [algo/blast/unit_tests/api] aascan_unit_test (real 33.12, user 0.09, sys 0.02) ====================================================================== aascan_unit_test ====================================================================== 16946/000/0000/PB CD784232841C2001 0001/0001 2016-12-02T18:48:32.924084 bos01-arm64-038 UNK_CLIENT UNK_SESSION aascan_unit_test start /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test Running 4 test cases... 16946/000/0000/PE CD784232841C2001 0002/0002 2016-12-02T18:48:32.931587 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Critical: CONNECT "ncbi_gnutls.c", line 690: UNK_FUNC --- Unavailable feature GNUTLS 16946/000/0000/PE CD784232841C2001 0003/0003 2016-12-02T18:48:32.931689 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1742: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=bos01-arm64-038.buildd(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Not supported 16946/000/0000/PE CD784232841C2001 0004/0004 2016-12-02T18:48:32.931772 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 16946/000/0000/PE CD784232841C2001 0005/0005 2016-12-02T18:48:32.931837 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 16946/000/0000/PE CD784232841C2001 0007/0007 2016-12-02T18:48:32.933571 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(302.131) "ncbi_socket.c", line 4026: UNK_FUNC --- SSOCK#2000[?]: [SOCK::Connect] Failed to initialize secure session 16946/000/0000/PE CD784232841C2001 0008/0008 2016-12-02T18:48:32.933650 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1742: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=bos01-arm64-038.buildd(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Not supported 16946/000/0000/PE CD784232841C2001 0009/0009 2016-12-02T18:48:32.933723 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 16946/000/0000/PE CD784232841C2001 0010/0010 2016-12-02T18:48:32.933792 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 16946/000/0000/PE CD784232841C2001 0012/0012 2016-12-02T18:48:33.935597 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(302.131) "ncbi_socket.c", line 4026: UNK_FUNC --- SSOCK#3000[?]: [SOCK::Connect] Failed to initialize secure session 16946/000/0000/PE CD784232841C2001 0013/0013 2016-12-02T18:48:33.935729 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1742: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=bos01-arm64-038.buildd(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Not supported 16946/000/0000/PE CD784232841C2001 0014/0014 2016-12-02T18:48:33.935807 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 16946/000/0000/PE CD784232841C2001 0015/0015 2016-12-02T18:48:33.935879 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 16946/000/0000/PE CD784232841C2001 0017/0017 2016-12-02T18:48:36.437922 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(302.131) "ncbi_socket.c", line 4026: UNK_FUNC --- SSOCK#4000[?]: [SOCK::Connect] Failed to initialize secure session 16946/000/0000/PE CD784232841C2001 0018/0018 2016-12-02T18:48:36.438094 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1742: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=bos01-arm64-038.buildd(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Not supported 16946/000/0000/PE CD784232841C2001 0019/0019 2016-12-02T18:48:36.438177 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 16946/000/0000/PE CD784232841C2001 0020/0020 2016-12-02T18:48:36.438246 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 16946/000/0000/PE CD784232841C2001 0022/0022 2016-12-02T18:48:41.190166 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(302.131) "ncbi_socket.c", line 4026: UNK_FUNC --- SSOCK#5000[?]: [SOCK::Connect] Failed to initialize secure session 16946/000/0000/PE CD784232841C2001 0023/0023 2016-12-02T18:48:41.190285 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1742: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=bos01-arm64-038.buildd(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Not supported 16946/000/0000/PE CD784232841C2001 0024/0024 2016-12-02T18:48:41.190347 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 16946/000/0000/PE CD784232841C2001 0025/0025 2016-12-02T18:48:41.190399 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/ScanOffsetTest": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(251): last checkpoint: "ScanOffsetTest" fixture entry. 16946/000/0000/PE CD784232841C2001 0029/0029 2016-12-02T18:48:41.193244 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(302.131) "ncbi_socket.c", line 4026: UNK_FUNC --- SSOCK#6000[?]: [SOCK::Connect] Failed to initialize secure session 16946/000/0000/PE CD784232841C2001 0030/0030 2016-12-02T18:48:41.193318 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1742: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=bos01-arm64-038.buildd(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Not supported 16946/000/0000/PE CD784232841C2001 0031/0031 2016-12-02T18:48:41.193467 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 16946/000/0000/PE CD784232841C2001 0032/0032 2016-12-02T18:48:41.193531 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 16946/000/0000/PE CD784232841C2001 0034/0034 2016-12-02T18:48:41.194931 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(302.131) "ncbi_socket.c", line 4026: UNK_FUNC --- SSOCK#7000[?]: [SOCK::Connect] Failed to initialize secure session 16946/000/0000/PE CD784232841C2001 0035/0035 2016-12-02T18:48:41.194998 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1742: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=bos01-arm64-038.buildd(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Not supported 16946/000/0000/PE CD784232841C2001 0036/0036 2016-12-02T18:48:41.195053 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 16946/000/0000/PE CD784232841C2001 0037/0037 2016-12-02T18:48:41.195098 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 16946/000/0000/PE CD784232841C2001 0039/0039 2016-12-02T18:48:42.196820 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(302.131) "ncbi_socket.c", line 4026: UNK_FUNC --- SSOCK#8000[?]: [SOCK::Connect] Failed to initialize secure session 16946/000/0000/PE CD784232841C2001 0040/0040 2016-12-02T18:48:42.196949 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1742: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=bos01-arm64-038.buildd(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Not supported 16946/000/0000/PE CD784232841C2001 0041/0041 2016-12-02T18:48:42.197011 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 16946/000/0000/PE CD784232841C2001 0042/0042 2016-12-02T18:48:42.197064 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 16946/000/0000/PE CD784232841C2001 0044/0044 2016-12-02T18:48:44.698907 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(302.131) "ncbi_socket.c", line 4026: UNK_FUNC --- SSOCK#9000[?]: [SOCK::Connect] Failed to initialize secure session 16946/000/0000/PE CD784232841C2001 0045/0045 2016-12-02T18:48:44.699025 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1742: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=bos01-arm64-038.buildd(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Not supported 16946/000/0000/PE CD784232841C2001 0046/0046 2016-12-02T18:48:44.699087 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 16946/000/0000/PE CD784232841C2001 0047/0047 2016-12-02T18:48:44.699139 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 16946/000/0000/PE CD784232841C2001 0049/0049 2016-12-02T18:48:49.451104 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(302.131) "ncbi_socket.c", line 4026: UNK_FUNC --- SSOCK#10000[?]: [SOCK::Connect] Failed to initialize secure session 16946/000/0000/PE CD784232841C2001 0050/0050 2016-12-02T18:48:49.451290 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1742: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=bos01-arm64-038.buildd(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Not supported 16946/000/0000/PE CD784232841C2001 0051/0051 2016-12-02T18:48:49.451381 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 16946/000/0000/PE CD784232841C2001 0052/0052 2016-12-02T18:48:49.451455 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/ScanMaxHitsTest": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(331): last checkpoint: "ScanMaxHitsTest" fixture entry. 16946/000/0000/PE CD784232841C2001 0056/0056 2016-12-02T18:48:49.454696 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(302.131) "ncbi_socket.c", line 4026: UNK_FUNC --- SSOCK#11000[?]: [SOCK::Connect] Failed to initialize secure session 16946/000/0000/PE CD784232841C2001 0057/0057 2016-12-02T18:48:49.454786 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1742: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=bos01-arm64-038.buildd(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Not supported 16946/000/0000/PE CD784232841C2001 0058/0058 2016-12-02T18:48:49.454859 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 16946/000/0000/PE CD784232841C2001 0059/0059 2016-12-02T18:48:49.454928 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 16946/000/0000/PE CD784232841C2001 0061/0061 2016-12-02T18:48:49.456419 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(302.131) "ncbi_socket.c", line 4026: UNK_FUNC --- SSOCK#12000[?]: [SOCK::Connect] Failed to initialize secure session 16946/000/0000/PE CD784232841C2001 0062/0062 2016-12-02T18:48:49.456494 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1742: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=bos01-arm64-038.buildd(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Not supported 16946/000/0000/PE CD784232841C2001 0063/0063 2016-12-02T18:48:49.456562 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 16946/000/0000/PE CD784232841C2001 0064/0064 2016-12-02T18:48:49.456625 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 16946/000/0000/PE CD784232841C2001 0066/0066 2016-12-02T18:48:50.458617 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(302.131) "ncbi_socket.c", line 4026: UNK_FUNC --- SSOCK#13000[?]: [SOCK::Connect] Failed to initialize secure session 16946/000/0000/PE CD784232841C2001 0067/0067 2016-12-02T18:48:50.458760 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1742: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=bos01-arm64-038.buildd(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Not supported 16946/000/0000/PE CD784232841C2001 0068/0068 2016-12-02T18:48:50.458840 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 16946/000/0000/PE CD784232841C2001 0069/0069 2016-12-02T18:48:50.458909 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 16946/000/0000/PE CD784232841C2001 0071/0071 2016-12-02T18:48:52.960798 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(302.131) "ncbi_socket.c", line 4026: UNK_FUNC --- SSOCK#14000[?]: [SOCK::Connect] Failed to initialize secure session 16946/000/0000/PE CD784232841C2001 0072/0072 2016-12-02T18:48:52.960931 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1742: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=bos01-arm64-038.buildd(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Not supported 16946/000/0000/PE CD784232841C2001 0073/0073 2016-12-02T18:48:52.961014 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 16946/000/0000/PE CD784232841C2001 0074/0074 2016-12-02T18:48:52.961084 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 16946/000/0000/PE CD784232841C2001 0076/0076 2016-12-02T18:48:57.712927 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(302.131) "ncbi_socket.c", line 4026: UNK_FUNC --- SSOCK#15000[?]: [SOCK::Connect] Failed to initialize secure session 16946/000/0000/PE CD784232841C2001 0077/0077 2016-12-02T18:48:57.713057 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1742: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=bos01-arm64-038.buildd(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Not supported 16946/000/0000/PE CD784232841C2001 0078/0078 2016-12-02T18:48:57.713122 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 16946/000/0000/PE CD784232841C2001 0079/0079 2016-12-02T18:48:57.713176 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/SkipMaskedRanges": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(384): last checkpoint: "SkipMaskedRanges" fixture entry. 16946/000/0000/PE CD784232841C2001 0083/0083 2016-12-02T18:48:57.716154 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(302.131) "ncbi_socket.c", line 4026: UNK_FUNC --- SSOCK#16000[?]: [SOCK::Connect] Failed to initialize secure session 16946/000/0000/PE CD784232841C2001 0084/0084 2016-12-02T18:48:57.716227 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1742: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=bos01-arm64-038.buildd(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Not supported 16946/000/0000/PE CD784232841C2001 0085/0085 2016-12-02T18:48:57.716282 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 16946/000/0000/PE CD784232841C2001 0086/0086 2016-12-02T18:48:57.716328 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 16946/000/0000/PE CD784232841C2001 0088/0088 2016-12-02T18:48:57.717751 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(302.131) "ncbi_socket.c", line 4026: UNK_FUNC --- SSOCK#17000[?]: [SOCK::Connect] Failed to initialize secure session 16946/000/0000/PE CD784232841C2001 0089/0089 2016-12-02T18:48:57.717819 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1742: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=bos01-arm64-038.buildd(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Not supported 16946/000/0000/PE CD784232841C2001 0090/0090 2016-12-02T18:48:57.717872 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 16946/000/0000/PE CD784232841C2001 0091/0091 2016-12-02T18:48:57.717918 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 16946/000/0000/PE CD784232841C2001 0093/0093 2016-12-02T18:48:58.719816 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(302.131) "ncbi_socket.c", line 4026: UNK_FUNC --- SSOCK#18000[?]: [SOCK::Connect] Failed to initialize secure session 16946/000/0000/PE CD784232841C2001 0094/0094 2016-12-02T18:48:58.720006 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1742: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=bos01-arm64-038.buildd(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Not supported 16946/000/0000/PE CD784232841C2001 0095/0095 2016-12-02T18:48:58.720712 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 16946/000/0000/PE CD784232841C2001 0096/0096 2016-12-02T18:48:58.720821 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 16946/000/0000/PE CD784232841C2001 0098/0098 2016-12-02T18:49:01.222836 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(302.131) "ncbi_socket.c", line 4026: UNK_FUNC --- SSOCK#19000[?]: [SOCK::Connect] Failed to initialize secure session 16946/000/0000/PE CD784232841C2001 0099/0099 2016-12-02T18:49:01.222956 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1742: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=bos01-arm64-038.buildd(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Not supported 16946/000/0000/PE CD784232841C2001 0100/0100 2016-12-02T18:49:01.223020 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 16946/000/0000/PE CD784232841C2001 0101/0101 2016-12-02T18:49:01.223072 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 16946/000/0000/PE CD784232841C2001 0103/0103 2016-12-02T18:49:05.974878 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(302.131) "ncbi_socket.c", line 4026: UNK_FUNC --- SSOCK#20000[?]: [SOCK::Connect] Failed to initialize secure session 16946/000/0000/PE CD784232841C2001 0104/0104 2016-12-02T18:49:05.975013 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1742: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=bos01-arm64-038.buildd(127.0.1.1)&platform=armv7l-unknown-linux-gnueabihf] Failed to connect: Not supported 16946/000/0000/PE CD784232841C2001 0105/0105 2016-12-02T18:49:05.975076 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 16946/000/0000/PE CD784232841C2001 0106/0106 2016-12-02T18:49:05.975129 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/ScanCheckScores": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(434): last checkpoint: "ScanCheckScores" fixture entry. Executed 4 test cases. *** 4 failures are detected in the test module "Master Test Suite" 16946/000/0000/PE CD784232841C2001 0110/0110 2016-12-02T18:49:05.976906 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test extra ncbi_phid=CD784232841C20010000000000000001 16946/000/0000/PE CD784232841C2001 0111/0111 2016-12-02T18:49:05.976994 bos01-arm64-038 UNK_CLIENT CD784232841C2001_0000SID aascan_unit_test stop 201 33.058738946 Command exited with non-zero status 201 real 33.12 user 0.09 sys 0.02 Start time : 12/02/2016 18:48:32 Stop time : 12/02/2016 18:49:05 Load averages: 1.21 3.06 3.65 @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ @@@ EXIT CODE: 201 make[1]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0' fakeroot debian/rules binary-arch dh binary-arch -Dc++ --with autotools_dev dh_testroot -a -O-Dc\+\+ dh_prep -a -O-Dc\+\+ dh_installdirs -a -O-Dc\+\+ debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0' # cp c++/BUILD/lib/*.so debian/ncbi-blast+/usr/lib/ncbi-blast+/ cp c++/BUILD/bin/* debian/ncbi-blast+/usr/bin/ make[1]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0' debian/rules override_dh_install-arch make[1]: Entering directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0' # dh_install mv debian/ncbi-blast+/usr/bin/rpsblast debian/ncbi-blast+/usr/bin/rpsblast+ mv debian/ncbi-blast+/usr/bin/seedtop debian/ncbi-blast+/usr/bin/seedtop+ mv debian/ncbi-blast+/usr/bin/legacy_blast.pl debian/ncbi-blast+/usr/bin/legacy_blast mv debian/ncbi-blast+/usr/bin/update_blastdb.pl debian/ncbi-blast+/usr/bin/update_blastdb mv debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter.py \ debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter rm -f debian/ncbi-blast+/usr/bin/*test* debian/ncbi-blast+/usr/bin/seqdb_demo \ debian/ncbi-blast+/usr/bin/datatool debian/ncbi-blast+/usr/bin/run_with_lock \ debian/ncbi-blast+/usr/bin/project_tree_builder for x in debian/ncbi-blast+/usr/bin/*; do \ LD_LIBRARY_PATH=c++/BUILD/lib ldd $x; \ done 2>/dev/null | awk '/BUILD/ { print $3 }' | sort -u | \ xargs cp -v -t debian/ncbi-blast+/usr/lib/ncbi-blast+ 'c++/BUILD/lib/libalign_format.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libalign_format.so' 'c++/BUILD/lib/libbiblio.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libbiblio.so' 'c++/BUILD/lib/libblast.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblast.so' 'c++/BUILD/lib/libblast_services.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblast_services.so' 'c++/BUILD/lib/libblastdb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastdb.so' 'c++/BUILD/lib/libblastdb_format.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastdb_format.so' 'c++/BUILD/lib/libblastinput.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastinput.so' 'c++/BUILD/lib/libblastxml.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastxml.so' 'c++/BUILD/lib/libblastxml2.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastxml2.so' 'c++/BUILD/lib/libcomposition_adjustment.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libcomposition_adjustment.so' 'c++/BUILD/lib/libconnect.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libconnect.so' 'c++/BUILD/lib/libcreaders.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libcreaders.so' 'c++/BUILD/lib/libgbseq.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgbseq.so' 'c++/BUILD/lib/libgene_info.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgene_info.so' 'c++/BUILD/lib/libgeneral.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgeneral.so' 'c++/BUILD/lib/libgenome_collection.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgenome_collection.so' 'c++/BUILD/lib/libid1.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libid1.so' 'c++/BUILD/lib/libid2.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libid2.so' 'c++/BUILD/lib/libmedlars.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmedlars.so' 'c++/BUILD/lib/libmedline.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmedline.so' 'c++/BUILD/lib/libmla.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmla.so' 'c++/BUILD/lib/libmlacli.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmlacli.so' 'c++/BUILD/lib/libncbi_xloader_blastdb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xloader_blastdb.so' 'c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xloader_blastdb_rmt.so' 'c++/BUILD/lib/libncbi_xloader_genbank.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xloader_genbank.so' 'c++/BUILD/lib/libncbi_xreader.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader.so' 'c++/BUILD/lib/libncbi_xreader_cache.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader_cache.so' 'c++/BUILD/lib/libncbi_xreader_id1.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader_id1.so' 'c++/BUILD/lib/libncbi_xreader_id2.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader_id2.so' 'c++/BUILD/lib/libpub.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libpub.so' 'c++/BUILD/lib/libpubmed.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libpubmed.so' 'c++/BUILD/lib/libscoremat.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libscoremat.so' 'c++/BUILD/lib/libseq.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseq.so' 'c++/BUILD/lib/libseqcode.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqcode.so' 'c++/BUILD/lib/libseqdb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqdb.so' 'c++/BUILD/lib/libseqedit.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqedit.so' 'c++/BUILD/lib/libseqmasks_io.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqmasks_io.so' 'c++/BUILD/lib/libseqset.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqset.so' 'c++/BUILD/lib/libseqsplit.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqsplit.so' 'c++/BUILD/lib/libsequtil.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libsequtil.so' 'c++/BUILD/lib/libsubmit.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libsubmit.so' 'c++/BUILD/lib/libtables.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libtables.so' 'c++/BUILD/lib/libtaxon1.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libtaxon1.so' 'c++/BUILD/lib/libtaxon3.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libtaxon3.so' 'c++/BUILD/lib/libvalid.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libvalid.so' 'c++/BUILD/lib/libwritedb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libwritedb.so' 'c++/BUILD/lib/libxalgoblastdbindex.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgoblastdbindex.so' 'c++/BUILD/lib/libxalgodustmask.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgodustmask.so' 'c++/BUILD/lib/libxalgosegmask.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgosegmask.so' 'c++/BUILD/lib/libxalgowinmask.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgowinmask.so' 'c++/BUILD/lib/libxalnmgr.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalnmgr.so' 'c++/BUILD/lib/libxblast.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxblast.so' 'c++/BUILD/lib/libxblastformat.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxblastformat.so' 'c++/BUILD/lib/libxcgi.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxcgi.so' 'c++/BUILD/lib/libxcleanup.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxcleanup.so' 'c++/BUILD/lib/libxcompress.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxcompress.so' 'c++/BUILD/lib/libxconnect.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxconnect.so' 'c++/BUILD/lib/libxformat.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxformat.so' 'c++/BUILD/lib/libxhtml.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxhtml.so' 'c++/BUILD/lib/libxncbi.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxncbi.so' 'c++/BUILD/lib/libxnetblast.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxnetblast.so' 'c++/BUILD/lib/libxnetblastcli.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxnetblastcli.so' 'c++/BUILD/lib/libxobjmgr.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxobjmgr.so' 'c++/BUILD/lib/libxobjread.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxobjread.so' 'c++/BUILD/lib/libxobjutil.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxobjutil.so' 'c++/BUILD/lib/libxregexp.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxregexp.so' 'c++/BUILD/lib/libxser.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxser.so' 'c++/BUILD/lib/libxutil.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxutil.so' make[1]: Leaving directory '/build/ncbi-blast+-kcARvj/ncbi-blast+-2.5.0' dh_installdocs -a -O-Dc\+\+ dh_installchangelogs -a -O-Dc\+\+ dh_installexamples -a -O-Dc\+\+ dh_installman -a -O-Dc\+\+ dh_installcatalogs -a -O-Dc\+\+ dh_installcron -a -O-Dc\+\+ dh_installdebconf -a -O-Dc\+\+ dh_installemacsen -a -O-Dc\+\+ dh_installifupdown -a -O-Dc\+\+ dh_installinfo -a -O-Dc\+\+ dh_installinit -a -O-Dc\+\+ dh_installmenu -a -O-Dc\+\+ dh_installmime -a -O-Dc\+\+ dh_installmodules -a -O-Dc\+\+ dh_installlogcheck -a -O-Dc\+\+ dh_installlogrotate -a -O-Dc\+\+ dh_installpam -a -O-Dc\+\+ dh_installppp -a -O-Dc\+\+ dh_installudev -a -O-Dc\+\+ dh_installgsettings -a -O-Dc\+\+ dh_bugfiles -a -O-Dc\+\+ dh_ucf -a -O-Dc\+\+ dh_lintian -a -O-Dc\+\+ dh_gconf -a -O-Dc\+\+ dh_icons -a -O-Dc\+\+ dh_perl -a -O-Dc\+\+ dh_usrlocal -a -O-Dc\+\+ dh_link -a -O-Dc\+\+ dh_installwm -a -O-Dc\+\+ dh_installxfonts -a -O-Dc\+\+ dh_strip_nondeterminism -a -O-Dc\+\+ dh_compress -a -O-Dc\+\+ dh_fixperms -a -O-Dc\+\+ dh_strip -a -O-Dc\+\+ dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform armhf: ncbi-blast+ dh_strip debug symbol extraction: packages to act on: ncbi-blast+ dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package ncbi-blast+: unused substitution variable ${perl:Depends} /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs -a -O-Dc\+\+ dh_shlibdeps -a -O-Dc\+\+ dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xloader_genbank.so was not linked against libconnect.so (it uses none of the library's symbols) dh_installdeb -a -O-Dc\+\+ dh_gencontrol -a -O-Dc\+\+ dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform armhf: ncbi-blast+ dh_gencontrol debug symbol wrapper: packages to act on: ncbi-blast+ dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package ncbi-blast+ (pkgdir debian/ncbi-blast+, ddeb package dir debian/ncbi-blast+-dbgsym) dh_gencontrol debug symbol wrapper: building ncbi-blast+-dbgsym_2.5.0-1_armhf.ddeb dpkg-deb: building package 'ncbi-blast+-dbgsym' in '../ncbi-blast+-dbgsym_2.5.0-1_armhf.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile ncbi-blast+-dbgsym_2.5.0-1_armhf.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a -O-Dc\+\+ dh_builddeb -a -O-Dc\+\+ INFO: pkgstriptranslations version 131 pkgstriptranslations: processing ncbi-blast+ (in debian/ncbi-blast+); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/ncbi-blast+/DEBIAN/control, package ncbi-blast+, directory debian/ncbi-blast+ pkgstripfiles: Truncating usr/share/doc/ncbi-blast+/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package ncbi-blast+ ... pkgstripfiles: No PNG files. dpkg-deb: building package 'ncbi-blast+' in '../ncbi-blast+_2.5.0-1_armhf.deb'. dpkg-genchanges --build=any -mLaunchpad Build Daemon >../ncbi-blast+_2.5.0-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build ncbi-blast+-2.5.0 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20161202-1858 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ ncbi-blast+_2.5.0-1_armhf.changes: ---------------------------------- Format: 1.8 Date: Thu, 01 Dec 2016 14:40:17 +0100 Source: ncbi-blast+ Binary: ncbi-blast+ ncbi-blast+-legacy Architecture: armhf Version: 2.5.0-1 Distribution: zesty-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Olivier Sallou Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Changes: ncbi-blast+ (2.5.0-1) unstable; urgency=medium . * New upstream release Checksums-Sha1: f6ad73565d5c6416ee6b35ea7d286ed9ab6893fe 101875844 ncbi-blast+-dbgsym_2.5.0-1_armhf.ddeb ebc5ad90e64f6258fd8ce5d08144feab6a3b5a13 8074038 ncbi-blast+_2.5.0-1_armhf.deb Checksums-Sha256: 776a3b30b74591e3b036e700e2dcd7ac9fcf6e41f0bf7a4593cf2b3051abb716 101875844 ncbi-blast+-dbgsym_2.5.0-1_armhf.ddeb 41f142837acb981d1d82c365b827cc01bc59484c60bf13b443220fea21a70195 8074038 ncbi-blast+_2.5.0-1_armhf.deb Files: 165d0a8686cefdc99297e34530a9665c 101875844 science extra ncbi-blast+-dbgsym_2.5.0-1_armhf.ddeb 849c240df5bf794dd2d23ab78f226e28 8074038 science optional ncbi-blast+_2.5.0-1_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ ncbi-blast+_2.5.0-1_armhf.deb ----------------------------- new debian package, version 2.0. size 8074038 bytes: control archive=3801 bytes. 1286 bytes, 25 lines control 6674 bytes, 101 lines md5sums Package: ncbi-blast+ Version: 2.5.0-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 26413 Depends: ncbi-data, python, perl:any, libbz2-1.0, libc6 (>= 2.15), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libpcre3, libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.0) Enhances: t-coffee Section: science Priority: optional Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Description: next generation suite of BLAST sequence search tools The Basic Local Alignment Search Tool (BLAST) is the most widely used sequence similarity tool. There are versions of BLAST that compare protein queries to protein databases, nucleotide queries to nucleotide databases, as well as versions that translate nucleotide queries or databases in all six frames and compare to protein databases or queries. PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting with a protein query, and then uses that PSSM to perform further searches. It is also possible to compare a protein or nucleotide query to a database of PSSM’s. The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as a network service. drwxr-xr-x root/root 0 2016-12-01 13:40 ./ drwxr-xr-x root/root 0 2016-12-01 13:40 ./usr/ drwxr-xr-x root/root 0 2016-12-01 13:40 ./usr/bin/ -rwxr-xr-x root/root 165508 2016-12-01 13:40 ./usr/bin/blast_formatter -rwxr-xr-x root/root 67144 2016-12-01 13:40 ./usr/bin/blastdb_aliastool -rwxr-xr-x root/root 103992 2016-12-01 13:40 ./usr/bin/blastdbcheck -rwxr-xr-x root/root 83568 2016-12-01 13:40 ./usr/bin/blastdbcmd -rwxr-xr-x root/root 42572 2016-12-01 13:40 ./usr/bin/blastdbcp -rwxr-xr-x root/root 136832 2016-12-01 13:40 ./usr/bin/blastn -rwxr-xr-x root/root 136832 2016-12-01 13:40 ./usr/bin/blastp -rwxr-xr-x root/root 136832 2016-12-01 13:40 ./usr/bin/blastx -rwxr-xr-x root/root 46648 2016-12-01 13:40 ./usr/bin/convert2blastmask -rwxr-xr-x root/root 157312 2016-12-01 13:40 ./usr/bin/deltablast -rwxr-xr-x root/root 30264 2016-12-01 13:40 ./usr/bin/dustmasker -rwxr-xr-x root/root 17976 2016-12-01 13:40 ./usr/bin/gene_info_reader -rwxr-xr-x root/root 51346 2016-12-01 13:40 ./usr/bin/legacy_blast -rwxr-xr-x root/root 124472 2016-12-01 13:40 ./usr/bin/makeblastdb -rwxr-xr-x root/root 38456 2016-12-01 13:40 ./usr/bin/makembindex -rwxr-xr-x root/root 99928 2016-12-01 13:40 ./usr/bin/makeprofiledb -rwxr-xr-x root/root 161408 2016-12-01 13:40 ./usr/bin/psiblast -rwxr-xr-x root/root 136832 2016-12-01 13:40 ./usr/bin/rpsblast+ -rwxr-xr-x root/root 136832 2016-12-01 13:40 ./usr/bin/rpstblastn -rwxr-xr-x root/root 136832 2016-12-01 13:40 ./usr/bin/seedtop+ -rwxr-xr-x root/root 30264 2016-12-01 13:40 ./usr/bin/segmasker -rwxr-xr-x root/root 30264 2016-12-01 13:40 ./usr/bin/seqdb_perf -rwxr-xr-x root/root 145024 2016-12-01 13:40 ./usr/bin/tblastn -rwxr-xr-x root/root 136832 2016-12-01 13:40 ./usr/bin/tblastx -rwxr-xr-x root/root 12488 2016-12-01 13:40 ./usr/bin/update_blastdb -rwxr-xr-x root/root 30264 2016-12-01 13:40 ./usr/bin/windowmasker -rwxr-xr-x root/root 5950 2016-12-01 13:40 ./usr/bin/windowmasker_2.2.22_adapter drwxr-xr-x root/root 0 2016-12-01 13:40 ./usr/lib/ drwxr-xr-x root/root 0 2016-12-01 13:40 ./usr/lib/ncbi-blast+/ -rw-r--r-- root/root 640460 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libalign_format.so -rw-r--r-- root/root 230860 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libbiblio.so -rw-r--r-- root/root 467772 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libblast.so -rw-r--r-- root/root 42444 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libblast_services.so -rw-r--r-- root/root 62924 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libblastdb.so -rw-r--r-- root/root 75212 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libblastdb_format.so -rw-r--r-- root/root 460320 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libblastinput.so -rw-r--r-- root/root 54732 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libblastxml.so -rw-r--r-- root/root 124364 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libblastxml2.so -rw-r--r-- root/root 62920 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libcomposition_adjustment.so -rw-r--r-- root/root 267748 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libconnect.so -rw-r--r-- root/root 25908 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libcreaders.so -rw-r--r-- root/root 165324 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libgbseq.so -rw-r--r-- root/root 46540 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libgene_info.so -rw-r--r-- root/root 272040 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libgeneral.so -rw-r--r-- root/root 247244 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libgenome_collection.so -rw-r--r-- root/root 67020 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libid1.so -rw-r--r-- root/root 206284 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libid2.so -rw-r--r-- root/root 21964 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libmedlars.so -rw-r--r-- root/root 87500 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libmedline.so -rw-r--r-- root/root 50636 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libmla.so -rw-r--r-- root/root 34252 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libmlacli.so -rw-r--r-- root/root 83436 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libncbi_xloader_blastdb.so -rw-r--r-- root/root 79312 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libncbi_xloader_blastdb_rmt.so -rw-r--r-- root/root 140904 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libncbi_xloader_genbank.so -rw-r--r-- root/root 633460 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libncbi_xreader.so -rw-r--r-- root/root 149012 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libncbi_xreader_cache.so -rw-r--r-- root/root 95924 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libncbi_xreader_id1.so -rw-r--r-- root/root 71372 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libncbi_xreader_id2.so -rw-r--r-- root/root 99788 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libpub.so -rw-r--r-- root/root 26060 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libpubmed.so -rw-r--r-- root/root 107980 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libscoremat.so -rw-r--r-- root/root 4242792 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libseq.so -rw-r--r-- root/root 50636 2016-12-01 13:40 ./usr/lib/ncbi-blast+/libseqcode.so 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+------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 2225116 Build-Time: 5711 Distribution: zesty-proposed Host Architecture: armhf Install-Time: 46 Job: ncbi-blast+_2.5.0-1.dsc Machine Architecture: arm64 Package: ncbi-blast+ Package-Time: 5763 Source-Version: 2.5.0-1 Space: 2225116 Status: successful Version: 2.5.0-1 -------------------------------------------------------------------------------- Finished at 20161202-1858 Build needed 01:36:03, 2225116k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-11407473'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-11407473/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-11407473'] Unmounting chroot for build PACKAGEBUILD-11407473... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-11407473'] Removing build PACKAGEBUILD-11407473