RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lgw01-31 4.4.0-59-generic #80-Ubuntu SMP Fri Jan 6 17:47:47 UTC 2017 x86_64 Buildd toolchain package versions: launchpad-buildd_141 python-lpbuildd_141 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1 dpkg-dev_1.18.4ubuntu1.1 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.6. Syncing the system clock with the buildd NTP service... 16 Jan 23:10:52 ntpdate[1897]: adjust time server 10.211.37.1 offset -0.000196 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-11870423', '/home/buildd/filecache-default/94f0b0f826e99ad354ce9a7a99ba3c310ddcc327'] Unpacking chroot for build PACKAGEBUILD-11870423 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-11870423'] Mounting chroot for build PACKAGEBUILD-11870423 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-11870423', 'deb http://ftpmaster.internal/ubuntu zesty main universe', 'deb http://ftpmaster.internal/ubuntu zesty-security main universe', 'deb http://ftpmaster.internal/ubuntu zesty-updates main universe', 'deb http://ftpmaster.internal/ubuntu zesty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-11870423 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-11870423', 'amd64'] Updating debian chroot for build PACKAGEBUILD-11870423 Get:1 http://ftpmaster.internal/ubuntu zesty InRelease [253 kB] Get:2 http://ftpmaster.internal/ubuntu zesty-security InRelease [102 kB] Get:3 http://ftpmaster.internal/ubuntu zesty-updates InRelease [102 kB] Get:4 http://ftpmaster.internal/ubuntu zesty-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main amd64 Packages [1228 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main Translation-en [589 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/universe amd64 Packages [8079 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/universe Translation-en [4678 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 Packages [95.1 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main Translation-en [51.3 kB] Get:11 http://ftpmaster.internal/ubuntu zesty-proposed/universe amd64 Packages [311 kB] Get:12 http://ftpmaster.internal/ubuntu zesty-proposed/universe Translation-en [146 kB] Fetched 15.7 MB in 5s (2929 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.24 perl-modules-5.24 The following packages will be upgraded: adduser advancecomp apt apt-transport-https base-files base-passwd bash binutils bsdutils ca-certificates cpp cpp-6 debianutils diffutils dmsetup findutils g++ g++-6 gcc gcc-6 gcc-6-base grep init init-system-helpers libapparmor1 libapt-pkg5.0 libasan3 libasn1-8-heimdal libassuan0 libatomic1 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcilkrts5 libcurl3-gnutls libdevmapper1.02.1 libfdisk1 libgcc-6-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libisl15 libitm1 libk5crypto3 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libksba8 libldap-2.4-2 liblsan0 liblzma5 libmount1 libmpx2 libnettle6 libnpth0 libp11-kit0 libpng16-16 libquadmath0 libroken18-heimdal libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libssl1.0.0 libstdc++-6-dev libstdc++6 libsystemd0 libtasn1-6 libtsan0 libubsan0 libudev1 libustr-1.0-1 libuuid1 libwind0-heimdal linux-libc-dev mount multiarch-support openssl perl perl-base pinentry-curses pkg-create-dbgsym sed systemd systemd-sysv tar tzdata ubuntu-keyring util-linux xz-utils zlib1g 110 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 59.5 MB of archives. After this operation, 41.8 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu zesty/main amd64 base-files amd64 9.6ubuntu9 [57.0 kB] Get:2 http://ftpmaster.internal/ubuntu zesty/main amd64 debianutils amd64 4.8.1 [85.7 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main amd64 bash amd64 4.4-2ubuntu1 [624 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main amd64 bsdutils amd64 1:2.29-1ubuntu2 [55.3 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main amd64 diffutils amd64 1:3.5-3 [166 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main amd64 findutils amd64 4.6.0+git+20161106-1 [282 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main amd64 grep amd64 2.27-1 [154 kB] Get:8 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libc6-dev amd64 2.24-7ubuntu2 [2274 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libc-dev-bin amd64 2.24-7ubuntu2 [68.5 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 linux-libc-dev amd64 4.9.0-12.13 [872 kB] Get:11 http://ftpmaster.internal/ubuntu zesty/main amd64 libquadmath0 amd64 6.3.0-2ubuntu1 [132 kB] Get:12 http://ftpmaster.internal/ubuntu zesty/main amd64 libitm1 amd64 6.3.0-2ubuntu1 [27.9 kB] Get:13 http://ftpmaster.internal/ubuntu zesty/main amd64 gcc-6-base amd64 6.3.0-2ubuntu1 [17.7 kB] Get:14 http://ftpmaster.internal/ubuntu zesty/main amd64 libgcc1 amd64 1:6.3.0-2ubuntu1 [38.1 kB] Get:15 http://ftpmaster.internal/ubuntu zesty/main amd64 libcc1-0 amd64 6.3.0-2ubuntu1 [31.1 kB] Get:16 http://ftpmaster.internal/ubuntu zesty/main amd64 binutils amd64 2.27.90.20170114-1ubuntu1 [2434 kB] Get:17 http://ftpmaster.internal/ubuntu zesty/main amd64 libgomp1 amd64 6.3.0-2ubuntu1 [74.0 kB] Get:18 http://ftpmaster.internal/ubuntu zesty/main amd64 libatomic1 amd64 6.3.0-2ubuntu1 [9170 B] Get:19 http://ftpmaster.internal/ubuntu zesty/main amd64 libasan3 amd64 6.3.0-2ubuntu1 [316 kB] Get:20 http://ftpmaster.internal/ubuntu zesty/main amd64 liblsan0 amd64 6.3.0-2ubuntu1 [117 kB] Get:21 http://ftpmaster.internal/ubuntu zesty/main amd64 libtsan0 amd64 6.3.0-2ubuntu1 [261 kB] Get:22 http://ftpmaster.internal/ubuntu zesty/main amd64 libubsan0 amd64 6.3.0-2ubuntu1 [108 kB] Get:23 http://ftpmaster.internal/ubuntu zesty/main amd64 libcilkrts5 amd64 6.3.0-2ubuntu1 [40.9 kB] Get:24 http://ftpmaster.internal/ubuntu zesty/main amd64 libmpx2 amd64 6.3.0-2ubuntu1 [11.5 kB] Get:25 http://ftpmaster.internal/ubuntu zesty/main amd64 g++-6 amd64 6.3.0-2ubuntu1 [7392 kB] Get:26 http://ftpmaster.internal/ubuntu zesty/main amd64 libstdc++-6-dev amd64 6.3.0-2ubuntu1 [1423 kB] Get:27 http://ftpmaster.internal/ubuntu zesty/main amd64 libgcc-6-dev amd64 6.3.0-2ubuntu1 [2308 kB] Get:28 http://ftpmaster.internal/ubuntu zesty/main amd64 gcc-6 amd64 6.3.0-2ubuntu1 [7167 kB] Get:29 http://ftpmaster.internal/ubuntu zesty/main amd64 cpp-6 amd64 6.3.0-2ubuntu1 [6611 kB] Get:30 http://ftpmaster.internal/ubuntu zesty/main amd64 libstdc++6 amd64 6.3.0-2ubuntu1 [402 kB] Get:31 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 zlib1g amd64 1:1.2.8.dfsg-4ubuntu1 [50.9 kB] Get:32 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1 [240 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main amd64 libisl15 amd64 0.18-1 [545 kB] Get:34 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libc6 amd64 2.24-7ubuntu2 [2587 kB] Get:35 http://ftpmaster.internal/ubuntu zesty/main amd64 libuuid1 amd64 2.29-1ubuntu2 [14.7 kB] Get:36 http://ftpmaster.internal/ubuntu zesty/main amd64 libblkid1 amd64 2.29-1ubuntu2 [110 kB] Get:37 http://ftpmaster.internal/ubuntu zesty/main amd64 libfdisk1 amd64 2.29-1ubuntu2 [144 kB] Get:38 http://ftpmaster.internal/ubuntu zesty/main amd64 libselinux1 amd64 2.6-3 [67.8 kB] Get:39 http://ftpmaster.internal/ubuntu zesty/main amd64 util-linux amd64 2.29-1ubuntu2 [911 kB] Get:40 http://ftpmaster.internal/ubuntu zesty/main amd64 mount amd64 2.29-1ubuntu2 [129 kB] Get:41 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 perl-modules-5.24 all 5.24.1-1 [2662 kB] Get:42 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libperl5.24 amd64 5.24.1-1 [3473 kB] Get:43 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 perl amd64 5.24.1-1 [219 kB] Get:44 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 perl-base amd64 5.24.1-1 [1341 kB] Get:45 http://ftpmaster.internal/ubuntu zesty/main amd64 sed amd64 4.3-3 [178 kB] Get:46 http://ftpmaster.internal/ubuntu zesty/main amd64 tar amd64 1.29b-1.1 [232 kB] Get:47 http://ftpmaster.internal/ubuntu zesty/main amd64 base-passwd amd64 3.5.42 [48.4 kB] Get:48 http://ftpmaster.internal/ubuntu zesty/main amd64 init-system-helpers all 1.46 [37.3 kB] Get:49 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libc-bin amd64 2.24-7ubuntu2 [635 kB] Get:50 http://ftpmaster.internal/ubuntu zesty/main amd64 liblzma5 amd64 5.2.2-1.2 [91.0 kB] Get:51 http://ftpmaster.internal/ubuntu zesty/main amd64 libapt-pkg5.0 amd64 1.4~beta3ubuntu1 [779 kB] Get:52 http://ftpmaster.internal/ubuntu zesty/main amd64 adduser all 3.113+nmu3ubuntu5 [161 kB] Get:53 http://ftpmaster.internal/ubuntu zesty/main amd64 ubuntu-keyring all 2016.10.27 [16.6 kB] Get:54 http://ftpmaster.internal/ubuntu zesty/main amd64 apt amd64 1.4~beta3ubuntu1 [1072 kB] Get:55 http://ftpmaster.internal/ubuntu zesty/main amd64 libapparmor1 amd64 2.10.95-4ubuntu5.2 [30.2 kB] Get:56 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libgpg-error0 amd64 1.26-1 [34.7 kB] Get:57 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libgcrypt20 amd64 1.7.5-3 [399 kB] Get:58 http://ftpmaster.internal/ubuntu zesty/main amd64 libmount1 amd64 2.29-1ubuntu2 [119 kB] Get:59 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libseccomp2 amd64 2.3.1-2.1ubuntu1 [37.5 kB] Get:60 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 systemd amd64 232-10ubuntu1 [2358 kB] Get:61 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libsystemd0 amd64 232-10ubuntu1 [211 kB] Get:62 http://ftpmaster.internal/ubuntu zesty/main amd64 init amd64 1.46 [5320 B] Get:63 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 systemd-sysv amd64 232-10ubuntu1 [13.9 kB] Get:64 http://ftpmaster.internal/ubuntu zesty/main amd64 libsepol1 amd64 2.6-2 [220 kB] Get:65 http://ftpmaster.internal/ubuntu zesty/main amd64 libustr-1.0-1 amd64 1.0.4-6 [66.1 kB] Get:66 http://ftpmaster.internal/ubuntu zesty/main amd64 libsemanage-common all 2.6-2 [6794 B] Get:67 http://ftpmaster.internal/ubuntu zesty/main amd64 libsemanage1 amd64 2.6-2 [82.6 kB] Get:68 http://ftpmaster.internal/ubuntu zesty/main amd64 libsmartcols1 amd64 2.29-1ubuntu2 [69.4 kB] Get:69 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libudev1 amd64 232-10ubuntu1 [57.3 kB] Get:70 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 multiarch-support amd64 2.24-7ubuntu2 [6816 B] Get:71 http://ftpmaster.internal/ubuntu zesty/main amd64 tzdata all 2016j-2 [204 kB] Get:72 http://ftpmaster.internal/ubuntu zesty/main amd64 libdevmapper1.02.1 amd64 2:1.02.136-1ubuntu1 [135 kB] Get:73 http://ftpmaster.internal/ubuntu zesty/main amd64 dmsetup amd64 2:1.02.136-1ubuntu1 [71.7 kB] Get:74 http://ftpmaster.internal/ubuntu zesty/main amd64 libroken18-heimdal amd64 1.7~git20160703+dfsg-1ubuntu1 [40.9 kB] Get:75 http://ftpmaster.internal/ubuntu zesty/main amd64 libasn1-8-heimdal amd64 1.7~git20160703+dfsg-1ubuntu1 [176 kB] Get:76 http://ftpmaster.internal/ubuntu zesty/main amd64 libassuan0 amd64 2.4.3-2 [34.5 kB] Get:77 http://ftpmaster.internal/ubuntu zesty/main amd64 libhogweed4 amd64 3.3-1 [135 kB] Get:78 http://ftpmaster.internal/ubuntu zesty/main amd64 libnettle6 amd64 3.3-1 [92.4 kB] Get:79 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libp11-kit0 amd64 0.23.3-3 [107 kB] Get:80 http://ftpmaster.internal/ubuntu zesty/main amd64 libtasn1-6 amd64 4.9-5 [35.4 kB] Get:81 http://ftpmaster.internal/ubuntu zesty/main amd64 libgnutls30 amd64 3.5.6-4ubuntu2 [626 kB] Get:82 http://ftpmaster.internal/ubuntu zesty/main amd64 libheimbase1-heimdal amd64 1.7~git20160703+dfsg-1ubuntu1 [29.2 kB] Get:83 http://ftpmaster.internal/ubuntu zesty/main amd64 libhcrypto4-heimdal amd64 1.7~git20160703+dfsg-1ubuntu1 [87.2 kB] Get:84 http://ftpmaster.internal/ubuntu zesty/main amd64 libwind0-heimdal amd64 1.7~git20160703+dfsg-1ubuntu1 [48.0 kB] Get:85 http://ftpmaster.internal/ubuntu zesty/main amd64 libhx509-5-heimdal amd64 1.7~git20160703+dfsg-1ubuntu1 [107 kB] Get:86 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libsqlite3-0 amd64 3.16.2-1 [486 kB] Get:87 http://ftpmaster.internal/ubuntu zesty/main amd64 libkrb5-26-heimdal amd64 1.7~git20160703+dfsg-1ubuntu1 [202 kB] Get:88 http://ftpmaster.internal/ubuntu zesty/main amd64 libheimntlm0-heimdal amd64 1.7~git20160703+dfsg-1ubuntu1 [15.2 kB] Get:89 http://ftpmaster.internal/ubuntu zesty/main amd64 libgssapi3-heimdal amd64 1.7~git20160703+dfsg-1ubuntu1 [96.8 kB] Get:90 http://ftpmaster.internal/ubuntu zesty/main amd64 libksba8 amd64 1.3.5-2 [92.6 kB] Get:91 http://ftpmaster.internal/ubuntu zesty/main amd64 libsasl2-modules-db amd64 2.1.27~72-g88d82a3+dfsg-1 [15.1 kB] Get:92 http://ftpmaster.internal/ubuntu zesty/main amd64 libsasl2-2 amd64 2.1.27~72-g88d82a3+dfsg-1 [48.8 kB] Get:93 http://ftpmaster.internal/ubuntu zesty/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu5 [161 kB] Get:94 http://ftpmaster.internal/ubuntu zesty/main amd64 libnpth0 amd64 1.3-1 [8054 B] Get:95 http://ftpmaster.internal/ubuntu zesty/main amd64 libslang2 amd64 2.3.1-5ubuntu1 [422 kB] Get:96 http://ftpmaster.internal/ubuntu zesty/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu10 [1082 kB] Get:97 http://ftpmaster.internal/ubuntu zesty/main amd64 pinentry-curses amd64 1.0.0-1 [32.6 kB] Get:98 http://ftpmaster.internal/ubuntu zesty/main amd64 xz-utils amd64 5.2.2-1.2 [83.2 kB] Get:99 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libgssapi-krb5-2 amd64 1.15-1 [120 kB] Get:100 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libkrb5-3 amd64 1.15-1 [275 kB] Get:101 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libkrb5support0 amd64 1.15-1 [31.9 kB] Get:102 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libk5crypto3 amd64 1.15-1 [84.8 kB] Get:103 http://ftpmaster.internal/ubuntu zesty/main amd64 libcurl3-gnutls amd64 7.51.0-1ubuntu1 [188 kB] Get:104 http://ftpmaster.internal/ubuntu zesty/main amd64 apt-transport-https amd64 1.4~beta3ubuntu1 [33.9 kB] Get:105 http://ftpmaster.internal/ubuntu zesty/main amd64 openssl amd64 1.0.2g-1ubuntu10 [491 kB] Get:106 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 ca-certificates all 20161130 [193 kB] Get:107 http://ftpmaster.internal/ubuntu zesty/main amd64 libpng16-16 amd64 1.6.28-1 [172 kB] Get:108 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 advancecomp amd64 1.23-1 [197 kB] Get:109 http://ftpmaster.internal/ubuntu zesty/main amd64 cpp amd64 4:6.2.1-1ubuntu1 [27.4 kB] Get:110 http://ftpmaster.internal/ubuntu zesty/main amd64 gcc amd64 4:6.2.1-1ubuntu1 [5170 B] Get:111 http://ftpmaster.internal/ubuntu zesty/main amd64 g++ amd64 4:6.2.1-1ubuntu1 [1478 B] Get:112 http://ftpmaster.internal/ubuntu zesty/main amd64 pkg-create-dbgsym all 0.73 [8952 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.5 MB in 19s (3039 kB/s) (Reading database ... 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-11870423', 'amd64', 'zesty-proposed', '-c', 'chroot:autobuild', '--arch=amd64', '--dist=zesty-proposed', '--purge=never', '--nolog', '-A', 'ncbi-blast+_2.6.0-1.dsc'] Initiating build PACKAGEBUILD-11870423 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-59-generic #80-Ubuntu SMP Fri Jan 6 17:47:47 UTC 2017 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-31.buildd +==============================================================================+ | ncbi-blast+ 2.6.0-1 (amd64) 16 Jan 2017 23:12 | +==============================================================================+ Package: ncbi-blast+ Version: 2.6.0-1 Source Version: 2.6.0-1 Distribution: zesty-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0' with '<>' I: NOTICE: Log filtering will replace 'build/ncbi-blast+-GcQwD4' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-11870423/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ncbi-blast+_2.6.0-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/build/ncbi-blast+-GcQwD4/resolver-RzC2k1/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/build/ncbi-blast+-GcQwD4/resolver-RzC2k1/apt_archive ./ InRelease Get:2 copy:/build/ncbi-blast+-GcQwD4/resolver-RzC2k1/apt_archive ./ Release [2119 B] Ign:3 copy:/build/ncbi-blast+-GcQwD4/resolver-RzC2k1/apt_archive ./ Release.gpg Get:4 copy:/build/ncbi-blast+-GcQwD4/resolver-RzC2k1/apt_archive ./ Sources [214 B] Get:5 copy:/build/ncbi-blast+-GcQwD4/resolver-RzC2k1/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (209 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 768 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/build/ncbi-blast+-GcQwD4/resolver-RzC2k1/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 768 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 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Merged Build-Depends: autotools-dev, debhelper (>= 9), libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, libpcre3-dev, time, zlib1g-dev Filtered Build-Depends: autotools-dev, debhelper (>= 9), libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, libpcre3-dev, time, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-ncbi-blast+-dummy' in '/build/ncbi-blast+-GcQwD4/resolver-VZi84W/apt_archive/sbuild-build-depends-ncbi-blast+-dummy.deb'. Ign:1 copy:/build/ncbi-blast+-GcQwD4/resolver-VZi84W/apt_archive ./ InRelease Get:2 copy:/build/ncbi-blast+-GcQwD4/resolver-VZi84W/apt_archive ./ Release [2119 B] Ign:3 copy:/build/ncbi-blast+-GcQwD4/resolver-VZi84W/apt_archive ./ Release.gpg Get:4 copy:/build/ncbi-blast+-GcQwD4/resolver-VZi84W/apt_archive ./ Sources [265 B] Get:5 copy:/build/ncbi-blast+-GcQwD4/resolver-VZi84W/apt_archive ./ Packages [581 B] Fetched 2965 B in 0s (88.9 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install ncbi-blast+ build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libboost-test-dev libboost-test1.62-dev libboost-test1.62.0 libboost1.62-dev libbsd0 libbz2-dev libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libgmp-dev libgmpxx4ldbl libgnutls-openssl27 libgnutls28-dev libgnutlsxx28 libicu57 libidn11-dev libmagic-mgc libmagic1 libp11-kit-dev libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libsigsegv2 libtasn1-6-dev libtimedate-perl libtool libunistring0 libxml2 m4 man-db nettle-dev pkg-config po-debconf time zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.62-doc libboost-atomic1.62-dev libboost-chrono1.62-dev libboost-context1.62-dev libboost-coroutine1.62-dev libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev libboost-filesystem1.62-dev libboost-graph1.62-dev libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev libboost-program-options1.62-dev libboost-python1.62-dev libboost-random1.62-dev libboost-regex1.62-dev libboost-serialization1.62-dev libboost-signals1.62-dev libboost-system1.62-dev libboost-thread1.62-dev libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev libmpfrc++-dev libntl-dev gmp-doc libgmp10-doc libmpfr-dev gnutls-doc gnutls-bin libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur bzip2-doc libglib2.0-data shared-mime-info xdg-user-dirs libtasn1-doc libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libboost-test-dev libboost-test1.62-dev libboost-test1.62.0 libboost1.62-dev libbsd0 libbz2-dev libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libgmp-dev libgmpxx4ldbl libgnutls-openssl27 libgnutls28-dev libgnutlsxx28 libicu57 libidn11-dev libmagic-mgc libmagic1 libp11-kit-dev libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libsigsegv2 libtasn1-6-dev libtimedate-perl libtool libunistring0 libxml2 m4 man-db nettle-dev pkg-config po-debconf sbuild-build-depends-ncbi-blast+-dummy time zlib1g-dev 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded. 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Setting up libpipeline1:amd64 (1.4.1-2) ... Setting up m4 (1.4.18-1) ... Setting up libicu57:amd64 (57.1-5) ... Setting up libbsd0:amd64 (0.8.3-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.1) ... Setting up libmagic-mgc (1:5.29-2) ... Setting up libmagic1:amd64 (1:5.29-2) ... Setting up libcroco3:amd64 (0.6.11-2) ... Setting up pkg-config (0.29.1-0ubuntu1) ... Setting up libgnutlsxx28:amd64 (3.5.6-4ubuntu2) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... Setting up autotools-dev (20161112.1) ... Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Setting up libboost-test1.62.0:amd64 (1.62.0+dfsg-4) ... Setting up libgnutls-openssl27:amd64 (3.5.6-4ubuntu2) ... Setting up libpcrecpp0v5:amd64 (2:8.39-2) ... Setting up libpcre32-3:amd64 (2:8.39-2) ... Setting up libpcre16-3:amd64 (2:8.39-2) ... Setting up bsdmainutils (9.0.12ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgmpxx4ldbl:amd64 (2:6.1.2+dfsg-1) ... Setting up autopoint (0.19.8.1-1ubuntu2) ... Setting up libidn11-dev (1.33-1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-4ubuntu1) ... Setting up libfile-stripnondeterminism-perl (0.029-2) ... Setting up libgmp-dev:amd64 (2:6.1.2+dfsg-1) ... Setting up libpcre3-dev:amd64 (2:8.39-2) ... Setting up gettext (0.19.8.1-1ubuntu2) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.29-2) ... Setting up libboost-test1.62-dev:amd64 (1.62.0+dfsg-4) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15-5ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up nettle-dev (3.3-1) ... Setting up libboost-test-dev:amd64 (1.62.0.1) ... Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up libgnutls28-dev:amd64 (3.5.6-4ubuntu2) ... Setting up dh-autoreconf (13) ... Setting up dh-strip-nondeterminism (0.029-2) ... Setting up debhelper (10.2.2ubuntu1) ... Setting up sbuild-build-depends-ncbi-blast+-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-59-generic amd64 (x86_64) Toolchain package versions: binutils_2.27.90.20170114-1ubuntu1 dpkg-dev_1.18.10ubuntu1 g++-6_6.3.0-2ubuntu1 gcc-6_6.3.0-2ubuntu1 libc6-dev_2.24-7ubuntu2 libstdc++-6-dev_6.3.0-2ubuntu1 libstdc++6_6.3.0-2ubuntu1 linux-libc-dev_4.9.0-12.13 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_1.23-1 apt_1.4~beta3ubuntu1 apt-transport-https_1.4~beta3ubuntu1 autoconf_2.69-10 automake_1:1.15-5ubuntu1 autopoint_0.19.8.1-1ubuntu2 autotools-dev_20161112.1 base-files_9.6ubuntu9 base-passwd_3.5.42 bash_4.4-2ubuntu1 binutils_2.27.90.20170114-1ubuntu1 bsdmainutils_9.0.12ubuntu1 bsdutils_1:2.29-1ubuntu2 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20161130 coreutils_8.25-2ubuntu2 cpp_4:6.2.1-1ubuntu1 cpp-6_6.3.0-2ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.59ubuntu1 debhelper_10.2.2ubuntu1 debianutils_4.8.1 dh-autoreconf_13 dh-strip-nondeterminism_0.029-2 diffutils_1:3.5-3 dmsetup_2:1.02.136-1ubuntu1 dpkg_1.18.10ubuntu1 dpkg-dev_1.18.10ubuntu1 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-1ubuntu2 file_1:5.29-2 findutils_4.6.0+git+20161106-1 g++_4:6.2.1-1ubuntu1 g++-6_6.3.0-2ubuntu1 gcc_4:6.2.1-1ubuntu1 gcc-6_6.3.0-2ubuntu1 gcc-6-base_6.3.0-2ubuntu1 gettext_0.19.8.1-1ubuntu2 gettext-base_0.19.8.1-1ubuntu2 gnupg_2.1.15-1ubuntu6 gnupg-agent_2.1.15-1ubuntu6 gpgv_2.1.15-1ubuntu6 grep_2.27-1 groff-base_1.22.3-9 gzip_1.6-4ubuntu1 hostname_3.18 init_1.46 init-system-helpers_1.46 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-4ubuntu5.2 libapt-pkg5.0_1.4~beta3ubuntu1 libarchive-zip-perl_1.59-1 libasan3_6.3.0-2ubuntu1 libasn1-8-heimdal_1.7~git20160703+dfsg-1ubuntu1 libassuan0_2.4.3-2 libatomic1_6.3.0-2ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.6-1ubuntu1 libaudit1_1:2.6.6-1ubuntu1 libblkid1_2.29-1ubuntu2 libboost-test-dev_1.62.0.1 libboost-test1.62-dev_1.62.0+dfsg-4 libboost-test1.62.0_1.62.0+dfsg-4 libboost1.62-dev_1.62.0+dfsg-4 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8build1 libbz2-dev_1.0.6-8build1 libc-bin_2.24-7ubuntu2 libc-dev-bin_2.24-7ubuntu2 libc6_2.24-7ubuntu2 libc6-dev_2.24-7ubuntu2 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_6.3.0-2ubuntu1 libcilkrts5_6.3.0-2ubuntu1 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.51.0-1ubuntu1 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.136-1ubuntu1 libdpkg-perl_1.18.10ubuntu1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.29-1ubuntu2 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.029-2 libgcc-6-dev_6.3.0-2ubuntu1 libgcc1_1:6.3.0-2ubuntu1 libgcrypt20_1.7.5-3 libgdbm3_1.8.3-14 libglib2.0-0_2.51.0-2 libgmp-dev_2:6.1.2+dfsg-1 libgmp10_2:6.1.2+dfsg-1 libgmpxx4ldbl_2:6.1.2+dfsg-1 libgnutls-openssl27_3.5.6-4ubuntu2 libgnutls28-dev_3.5.6-4ubuntu2 libgnutls30_3.5.6-4ubuntu2 libgnutlsxx28_3.5.6-4ubuntu2 libgomp1_6.3.0-2ubuntu1 libgpg-error0_1.26-1 libgssapi-krb5-2_1.15-1 libgssapi3-heimdal_1.7~git20160703+dfsg-1ubuntu1 libhcrypto4-heimdal_1.7~git20160703+dfsg-1ubuntu1 libheimbase1-heimdal_1.7~git20160703+dfsg-1ubuntu1 libheimntlm0-heimdal_1.7~git20160703+dfsg-1ubuntu1 libhogweed4_3.3-1 libhx509-5-heimdal_1.7~git20160703+dfsg-1ubuntu1 libicu57_57.1-5 libidn11_1.33-1 libidn11-dev_1.33-1 libip4tc0_1.6.0-3ubuntu2 libisl15_0.18-1 libitm1_6.3.0-2ubuntu1 libk5crypto3_1.15-1 libkeyutils1_1.5.9-9ubuntu1 libkmod2_22-1.1ubuntu1 libkrb5-26-heimdal_1.7~git20160703+dfsg-1ubuntu1 libkrb5-3_1.15-1 libkrb5support0_1.15-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.42+dfsg-2ubuntu5 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblsan0_6.3.0-2ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.29-2 libmagic1_1:5.29-2 libmount1_2.29-1ubuntu2 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libmpx2_6.3.0-2ubuntu1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-1 libnpth0_1.3-1 libp11-kit-dev_0.23.3-3 libp11-kit0_0.23.3-3 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre16-3_2:8.39-2 libpcre3_2:8.39-2 libpcre3-dev_2:8.39-2 libpcre32-3_2:8.39-2 libpcrecpp0v5_2:8.39-2 libperl5.22_5.22.2-3 libperl5.24_5.24.1-1 libpipeline1_1.4.1-2 libpng16-16_1.6.28-1 libprocps6_2:3.3.12-1ubuntu2 libquadmath0_6.3.0-2ubuntu1 libreadline7_7.0-0ubuntu2 libroken18-heimdal_1.7~git20160703+dfsg-1ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~72-g88d82a3+dfsg-1 libsasl2-modules-db_2.1.27~72-g88d82a3+dfsg-1 libseccomp2_2.3.1-2.1ubuntu1 libselinux1_2.6-3 libsemanage-common_2.6-2 libsemanage1_2.6-2 libsepol1_2.6-2 libsigsegv2_2.10-5 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.29-1ubuntu2 libsqlite3-0_3.16.2-1 libss2_1.43.3-1 libssl1.0.0_1.0.2g-1ubuntu10 libstdc++-6-dev_6.3.0-2ubuntu1 libstdc++6_6.3.0-2ubuntu1 libsystemd0_232-10ubuntu1 libtasn1-6_4.9-5 libtasn1-6-dev_4.9-5 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libtsan0_6.3.0-2ubuntu1 libubsan0_6.3.0-2ubuntu1 libudev1_232-10ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1ubuntu2 libwind0-heimdal_1.7~git20160703+dfsg-1ubuntu1 libxml2_2.9.4+dfsg1-2.1 linux-libc-dev_4.9.0-12.13 lockfile-progs_0.1.17 login_1:4.2-3.2ubuntu1 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mount_2.29-1ubuntu2 multiarch-support_2.24-7ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 nettle-dev_3.3-1 openssl_1.0.2g-1ubuntu10 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu1 patch_2.7.5-1 perl_5.24.1-1 perl-base_5.24.1-1 perl-modules-5.22_5.22.2-3 perl-modules-5.24_5.24.1-1 pinentry-curses_1.0.0-1 pkg-config_0.29.1-0ubuntu1 pkg-create-dbgsym_0.73 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ncbi-blast+-dummy_0.invalid.0 sed_4.3-3 sensible-utils_0.0.9 systemd_232-10ubuntu1 systemd-sysv_232-10ubuntu1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1.1 time_1.7-25.1 tzdata_2016j-2 ubuntu-keyring_2016.10.27 util-linux_2.29-1ubuntu2 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-4ubuntu1 zlib1g-dev_1:1.2.8.dfsg-4ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Jan 16 18:15:15 2017 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ncbi-blast+_2.6.0-1.dsc dpkg-source: info: extracting ncbi-blast+ in ncbi-blast+-2.6.0 dpkg-source: info: unpacking ncbi-blast+_2.6.0.orig.tar.gz dpkg-source: info: unpacking ncbi-blast+_2.6.0-1.debian.tar.xz dpkg-source: info: applying enable_clean_after_failed_compile dpkg-source: info: applying hurd_fixes dpkg-source: info: applying legacy_rename_rpsblast dpkg-source: info: applying fix_lib_deps dpkg-source: info: applying no_multiarch_rpath dpkg-source: info: applying use_pie_for_apps dpkg-source: info: applying skip_services_unit_test dpkg-source: info: applying fix_configure dpkg-source: info: applying support_x32 dpkg-source: info: applying suppress_gnutls_version_check dpkg-source: info: applying optionally_keep_sequence Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0 SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package ncbi-blast+ dpkg-buildpackage: info: source version 2.6.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build ncbi-blast+-2.6.0 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean -Dc++ --with autotools_dev dh_testdir -O-Dc\+\+ dh_auto_clean -O-Dc\+\+ dh_autotools-dev_restoreconfig -O-Dc\+\+ debian/rules override_dh_clean make[1]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0' cp c++/configure.orig configure.orig.save dh_clean #Tricky - for each module directory there may be several module files #or there may be none but then there is still a module named after the #directory. Clean everything! for x in c++/src/objects/* ; do \ (cd "$x" && ( \ mods="`echo *.module`" ; \ [ "${mods#*\*}" = "$mods" ] || mods="`basename $x`" ; \ for mod in $mods ; do \ ../../../BUILD/build/new_module.sh $mod purge_sources ; \ done ) ; \ ) ; \ done /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found debian/rules:102: recipe for target 'override_dh_clean' failed make[1]: [override_dh_clean] Error 127 (ignored) rm -rf c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module find -name check_exec.pid -delete rm -rf c++/BUILD mv configure.orig.save c++/configure.orig make[1]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0' debian/rules build dh build -Dc++ --with autotools_dev dh_testdir -O-Dc\+\+ dh_update_autotools_config -O-Dc\+\+ dh_autotools-dev_updateconfig -O-Dc\+\+ debian/rules override_dh_auto_configure make[1]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0' cd c++ && LD_LIBRARY_PATH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib${LD_LIBRARY_PATH+:$LD_LIBRARY_PATH} \ CONFIG_SHELL=/bin/bash ./configure --with-dll --with-mt --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --with-runpath=/usr/lib/ncbi-blast+ --with-build-root=BUILD --without-debug --without-downloaded-vdb --with-symbols CFLAGS_FOR_BUILD="-g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE" LDFLAGS_FOR_BUILD="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed" \ || (tail -v -n +0 config.log BUILD/status/config.log; exit 1) configure: loading site script ./src/build-system/config.site configure: creating cache config.cache checking TeamCity build number... none checking Subversion revision... unknown checking NCBI stable components' version... unknown checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for gcc... gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes adjusted C compiler: /usr/bin/gcc adjusted C++ compiler: /usr/bin/g++ checking whether /usr/bin/gcc has an option to export all symbols... -Wl,-export-dynamic checking whether /usr/bin/gcc supports -Wl,--{en,dis}able-new-dtags... yes checking whether _LIBCPP_VERSION is declared... no checking how to enable C++ '11 features in /usr/bin/g++ ... -std=gnu++11 checking how to enable C '11 or at least '99 features in /usr/bin/gcc ... -std=gnu11 -fgnu89-inline checking for dpkg-architecture... /usr/bin/dpkg-architecture checking for gawk... no checking for mawk... mawk checking for GNU make... /usr/bin/make checking for /usr/bin/make... /usr/bin/make checking whether ln -s works... yes checking for ranlib... ranlib checking for ar... ar cr checking ranlib's effectiveness... neutral checking for strip... strip checking whether strip loses runtime type information... no checking for ccache... no checking for tail... /usr/bin/tail checking whether /usr/bin/tail accepts modern syntax (-n N)... yes checking for basename... /usr/bin/basename checking for sed... /bin/sed checking for touch... /bin/touch checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking how to run /bin/grep -E quietly... /bin/grep -E -q checking for valgrind... no checking for ldd... /usr/bin/ldd checking whether /usr/bin/ldd accepts -r... yes checking how to run the C++ preprocessor... /usr/bin/g++ -std=gnu++11 -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for size_t... yes checking for size_t... 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for library containing cplus_demangle... no checking for nanosleep... yes checking for pthread_condattr_setclock... yes checking for sched_yield... yes checking for library containing iconv... none required checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for libz... yes checking for libbz2... yes checking for libpcre... yes checking for libgmp... yes checking for libgcrypt-config... no checking for libgcrypt... no checking for libhogweed... yes checking for libgnutls-config... no checking for libgnutls... yes checking for libssl... no checking for krb5-config... no checking for libgssapi_krb5... no checking for libcurl... no checking for reentrant Sybase libraries... no checking for Sybase... no checking for FreeTDS... no checking for mysql_config... no checking for Berkeley DB libraries... no checking for python... no checking for python2.5... no checking for python2.6... no checking 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config.status: creating /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc/common/ncbi_build_ver.h config.status: creating /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc/ncbiconf_unix.h config.status: executing default commands /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/corelib/ncbicfg.c is updated /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc/common/ncbi_build_ver.h is updated make[2]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/helpers' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/helpers TMPL=run_with_lock -kw all make[3]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/helpers' gcc -c -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/helpers/run_with_lock.c -o run_with_lock.o gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -fPIE -pie run_with_lock.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lm -lpthread -o run_with_lock /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f run_with_lock /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f run_with_lock /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/run_with_lock make[3]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/helpers' make[2]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/helpers' project_tree_builder is not found at /net/snowman/vol/export2/win-coremake/App/Ncbi/cppcore/ptb/Linux64/4.1.5/project_tree_builder Will build project_tree_builder locally ********************************************************************** Building project_tree_builder ********************************************************************** make[2]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' make[3]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /usr/bin/make[3] (Makefile.precompile): Nothing to be done for `all'. make[3]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /usr/bin/make[2] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib TMPL=corelib -w all make[3]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/blob_storage.cpp -o blob_storage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ddumpable.cpp -o ddumpable.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/env_reg.cpp -o env_reg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/metareg.cpp -o metareg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbiargs.cpp: In function 'std::__cxx11::string ncbi::s_CArgs_ReadFromConsole(const string&, ncbi::EEchoInput, const char*)': /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbiargs.cpp:2058:56: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write( tty, prompt.data(), prompt.length()); ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbiargs.cpp:2087:50: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write( tty, thx.data(), thx.length()); ^ O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOU/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:854:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbidiag.hpp:1810:34: note: declared here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:1824:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp: In member function 'std::__cxx11::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:1887:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:1912:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:1944:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)': /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:3226:48: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiapp.hpp:354:34: note: declared here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^~~~~~~~~~~~~~~~~~~~~ RCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include ncbicfg.c -o ncbicfg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbidll.cpp -o ncbidll.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbienv.cpp -o ncbienv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbifile.cpp -o ncbifile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 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-fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include 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/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/guard.cpp -o guard.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o /bin/rm -f libxncbi.so .libxncbi.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxncbi.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ldl -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxncbi.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxncbi.so /bin/ln -f .xncbi.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xncbi.dep make[3]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib TMPL=test_mt -w all make[3]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.so .libtest_mt.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtest_mt.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC test_mt.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libtest_mt.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libtest_mt.so /bin/ln -f .test_mt.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.test_mt.dep make[3]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib TMPL=test_boost -w all make[3]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/test_boost.cpp -o test_boost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/corelib/teamcity_messages.cpp -o teamcity_messages.o /bin/rm -f libtest_boost.so .libtest_boost.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtest_boost.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC test_boost.o teamcity_messages.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_boost.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libtest_boost.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libtest_boost.so /bin/ln -f .test_boost.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.test_boost.dep make[3]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' make[2]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' make[2]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util' /usr/bin/make[2] (Makefile.util.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util TMPL=util -w all make[3]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/random_gen.cpp -o random_gen.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/utf8.cpp -o utf8.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/checksum.cpp -o checksum.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/bytesrc.cpp -o bytesrc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/strbuffer.cpp -o strbuffer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/itree.cpp -o itree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/smalldns.cpp -o smalldns.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/thread_pool_old.cpp -o thread_pool_old.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/ddump_viewer.cpp -o ddump_viewer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/strsearch.cpp -o strsearch.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/logrotate.cpp -o logrotate.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/format_guess.cpp -o format_guess.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/ascii85.cpp -o ascii85.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/md5.cpp -o md5.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REEN/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp: In static member function 'static void ncbi::CDictionaryUtil::Stem(const string&, std::__cxx11::string*)': /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ TRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/file_obsolete.cpp -o file_obsolete.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/unicode.cpp -o unicode.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/dictionary.cpp -o dictionary.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp -o dictionary_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/thread_nonstop.cpp -o thread_nonstop.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/sgml_entity.cpp -o sgml_entity.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/static_set.cpp -o static_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/transmissionrw.cpp -o transmissionrw.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/miscmath.c -o miscmath.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/mutex_pool.cpp -o mutex_pool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/ncbi_cache.cpp -o ncbi_cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/line_reader.cpp -o line_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/util_exception.cpp -o util_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/uttp.cpp -o uttp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/multi_writer.cpp -o multi_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/itransaction.cpp -o itransaction.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/thread_pool.cpp -o thread_pool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/thread_pool_ctrl.cpp -o thread_pool_ctrl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/scheduler.cpp -o scheduler.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/distribution.cpp -o distribution.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/rangelist.cpp -o rangelist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/util_misc.cpp -o util_misc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/histogram_binning.cpp -o histogram_binning.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/table_printer.cpp -o table_printer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/retry_ctx.cpp -o retry_ctx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/stream_source.cpp -o stream_source.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/file_manifest.cpp -o file_manifest.o /bin/rm -f libxutil.so .libxutil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxutil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC random_gen.o utf8.o checksum.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxutil.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxutil.so /bin/ln -f .xutil.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xutil.dep make[3]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util' make[2]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util' make[2]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[3]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/regexp TMPL=regexp -w mark-as-disabled make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' make[3]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' make[2]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' make[2]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' /usr/bin/make[2] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.xregexp_template_tester.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/xregexp TMPL=xregexp -w all make[3]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/xregexp/regexp.cpp -o regexp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /bin/rm -f libxregexp.so .libxregexp.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxregexp.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC regexp.o arg_regexp.o mask_regexp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxncbi -lpcre /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxregexp.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxregexp.so /bin/ln -f .xregexp.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xregexp.dep make[3]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/xregexp TMPL=xregexp_template_tester -w all make[3]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.so .libxregexp_template_tester.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxregexp_template_tester.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC regexp_template_tester.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxregexp -lxncbi -lpcre /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxregexp_template_tester.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxregexp_template_tester.so /bin/ln -f .xregexp_template_tester.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xregexp_template_tester.dep make[3]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' make[2]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' make[2]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w all make[3]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxutil -lxncbi -lxregexp -lpcre -ldl -lm -lpthread -o project_tree_builder /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f project_tree_builder /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/project_tree_builder make[3]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder' make[2]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder' ********************************************************************** Running project_tree_builder. Please wait. ********************************************************************** ./build-system/project_tree_builder/project_tree_builder -dll -dtdep -conffile /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder.ini -logfile Flat.configuration_log /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ src Makefile.flat Done =============================================================================== NCBI C++ Toolkit documentation: Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/ Local: ./doc/public/index.html For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE LDFLAGS = -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O LIBRARIES: build as dynamic by default FEATURES: GCC MT LFS DLL DLL_BUILD unix WinMain Linux PACKAGES: enabled: Iconv Z BZ2 PCRE GMP GMP NETTLE NETTLE GNUTLS Boost.Spirit Boost.Test.Included disabled: UUID FUSE LocalZ LocalBZ2 LZO LocalPCRE GCRYPT OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON25 PYTHON26 PYTHON27 PYTHON3 PERL Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.System Boost.Test Boost.Thread C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC VDB OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF UNGIF GIF XPM FreeType FTGL MAGIC MIMETIC GSOAP AVRO Cereal SASL2 MONGODB GMOCK LAPACK LMDB PROJECTS: enabled: cgi serial objects app algo disabled: local_lbsm connext ncbi_crypt bdb dbapi ctools gui gbench Tools / flags / paths: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.mk Configuration header: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc/ncbiconf_unix.h To build everything: cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build && /usr/bin/make all_r or simply run /usr/bin/make in the current directory Alternatively, cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build && /usr/bin/make -f Makefile.flat ******* CONFIGURATION SUCCESSFUL ******* make[1]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0' cd c++/BUILD/build && \ make -j4 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" make[2]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build' /usr/bin/make -w -j --jobserver-fds=3,4 -f Makefile.flat ptb_all.real MTARGET= make[3]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build' cd corelib/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd util/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd serial/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd serial/datatool/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/serial/datatool' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/serial/datatool' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/serial' cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make[4] (Makefile.serial.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util' cd util/tables/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/tables' /usr/bin/make[4] (Makefile.composition_adjustment.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/composition_adjustment' cd connect/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.cserial.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.tables.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/tables' cd algo/blast/core/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/connect' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/core' /usr/bin/make[5] (Makefile.precompile): Nothing to be done for `all'. /usr/bin/make[4] (Makefile.connect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/core' cd util/sequtil/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/serial' cd util/creaders/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.connssl.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/sequtil' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/creaders' /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.creaders.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/creaders' cd objmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xxconnect.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr' /usr/bin/make[4] (Makefile.sequtil.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/sequtil' cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make[4] (Makefile.objmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr' cd objtools/readers/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xconnect.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/readers' /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.seqdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader' cd objmgr/util/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/util' /usr/bin/make[4] (Makefile.xobjread.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xthrserv.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' cd objtools/seqmasks_io/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/util' cd algo/blast/dbindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xobjreadex.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/seqmasks_io' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make[4] (Makefile.seqmasks_io.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/seqmasks_io' cd algo/dustmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xalgoblastdbindex.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex' cd algo/winmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/dustmask' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/winmask' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/readers' cd algo/blast/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/api' /usr/bin/make[4] (Makefile.xalgowinmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/winmask' cd objtools/blast/services/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xalgodustmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/dustmask' cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make[4] (Makefile.xblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/api' cd util/compress/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.blast_services.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services' cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.gene_info.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader' cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/api' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/connect' cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.compress.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/api' cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.ncbi_xreader_cache.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' cd objtools/alnmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/make[4] (Makefile.ncbi_xreader.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/alnmgr' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make[4] (Makefile.alnmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/alnmgr' cd cgi/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.ncbi_xreader_id2.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' cd html/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.ncbi_xloader_genbank.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/html' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/cgi' /usr/bin/make[4] (Makefile.ncbi_xreader_id1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' cd objtools/align_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format' /usr/bin/make[4] (Makefile.html.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/html' cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make[4] (Makefile.cgi.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make[4] (Makefile.align_format.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format' cd algo/blast/blastinput/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.blastdb_format.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format' cd util/xregexp/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.fcgi.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb_rmt.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.blastinput.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput' cd objtools/cleanup/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/cleanup' /usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.cleanup.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/cleanup' cd objtools/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xregexp_template_tester.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' cd algo/blast/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/format' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/format' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/cgi' cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput/unit_test' cd algo/blast/igblast/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex/makeindex' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xblastformat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/format' cd objtools/simple/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/igblast' /usr/bin/make[4] (Makefile.xformat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/format' cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/simple' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.igblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/igblast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xobjsimple.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/simple' cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.blast_unit_test_util.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make[4] (Makefile.seqalign_util.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.writedb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer' cd app/dustmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/dustmasker' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/dustmasker' cd algo/segmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/Makefile.legacy_blast builddir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast -w -j --jobserver-fds=3,4 all make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/segmask' /usr/bin/make[4] (Makefile.xalgosegmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/segmask' cd app/segmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/segmasker' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/segmasker' cd app/winmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/legacy_blast.pl /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/legacy_blast.pl /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/legacy_blast.pl make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/Makefile.update_blastdb builddir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/winmasker -w -j --jobserver-fds=3,4 all make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' cd objmgr/split/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/split' make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/update_blastdb.pl /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/update_blastdb.pl /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/update_blastdb.pl make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/windowmasker_2.2.22_adapter.py make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' /usr/bin/make[4] (Makefile.id2_split.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/split' cd objtools/align_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format/unit_test' cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' cd objtools/blast/seqdb_reader/test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.blast_app_util.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' cd corelib/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=corelib UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services/unit_test' cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=composition_adjustment UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/composition_adjustment' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `all'. /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j --jobserver-fds=3,4 all make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' cd util/tables/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=tables UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/tables' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/tables TMPL=tables -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: ‘s_CompoHeapIsValid’ defined but not used [-Wunused-function] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd connect/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xconnect UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/connect' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect TMPL=xconnect -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/run_with_lock: Adjusting base from make_xconnect to make__connect_common per /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/.#lock-map. make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/tables' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.so .libtables.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtables.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC raw_scoremat.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libtables.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libtables.so /bin/ln -f .tables.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.tables.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/tables' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/tables' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/connect' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_types.c -o ncbi_types.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_core.c -o ncbi_core.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/nIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_util.c:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_util.c: In function ‘CORE_SetLOGFILE_NAME_Ex’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_util.c:148:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(1, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -WforIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:77: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_DoLog’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:503:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(112, level, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:195:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:543:13: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(109, level, data, size, ^~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:576:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(113, level, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:584:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_InitAPI_’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:866:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Secure socket layer (SSL) has not" ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostname’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:175:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:1011:13: note: in expansion of macro ‘CORE_LOG_ERRNO_EXX’ CORE_LOG_ERRNO_EXX(103, eLOG_Error, ^~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:1020:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(104, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyname_’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:1153:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(106, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_getlocalhostaddress’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:1193:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, reget == eDefault ? eLOG_Warning : eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyname’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:1219:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(155, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyaddr_’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: ‘s_DistinctAlignmentsLength’ defined but not used [-Wunused-function] s_DistinctAlignmentsLength(BlastCompo_Alignment * list) ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: ‘s_AlignmentsAreSorted’ defined but not used [-Wunused-function] s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:1350:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(108, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyaddr’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:1384:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(10, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘x_TryLowerSockFileno’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:1493:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(111, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_Select_’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:1618:21: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(145, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:1747:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(5, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_Poll_’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:1891:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(146, eLOG_Critical, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:2036:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(147, ready ? eLOG_Warning : eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_IsConnected_’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:2610:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Trace, ^~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:2620:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(6, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:2655:25: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Trace, ^~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_Recv’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:2806:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(7, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_Read_’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:2987:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_Send’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:3337:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(11, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_WritePending’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:3489:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(12, sock->log != eOff ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_Shutdown’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:3661:21: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, !tv || (tv->tv_sec | tv->tv_usec) ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:3698:25: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(127, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:3747:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(16, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_Close_’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:3811:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(17, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:3827:21: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(18, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:3857:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(19, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:3916:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(21, abort == 1 ? eLOG_Warning : eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_Connect_’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4022:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(131, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4039:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(142, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4063:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(22, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4084:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(23, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4128:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(24, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4143:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(151, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4154:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(135, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4174:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(129, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4215:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(25, sock->log != eOff ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4259:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(26, sock->log != eOff ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_Create’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4345:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(27, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_CreateOnTop’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4398:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(47, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4421:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(148, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4459:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(48, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4500:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(50, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4514:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(49, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4577:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(132, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4599:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(153, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4610:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(138, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4630:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(124, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4645:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(43, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_CreateListening’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4697:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(144, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4731:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(34, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4777:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(35, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4832:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(36, error != SOCK_EADDRINUSE ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4853:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(150, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4904:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(38, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4923:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(37, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4974:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(110, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4988:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(115, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_Accept’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5035:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(39, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5091:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(40, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5150:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(41, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5209:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(42, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5220:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(152, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5231:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(137, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5251:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(128, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_CloseListening’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5296:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(44, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5325:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(45, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_RecvMsg’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5413:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(20, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5461:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(94, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_SendMsg’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5496:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(154, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5512:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(88, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5521:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(89, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5571:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(90, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5617:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(91, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘TRIGGER_Create’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5660:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(28, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5670:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(143, eLOG_Warning, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5682:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(29, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5692:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(30, eLOG_Warning, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5711:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(116, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘TRIGGER_Close’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5773:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(117, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘LSOCK_GetOSHandleEx’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5984:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(46, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Reconnect’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6172:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(52, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6182:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(53, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6194:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(51, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Shutdown’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6224:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(54, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6231:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(55, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6239:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(15, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Wait’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6369:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(56, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6397:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(57, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6411:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(58, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6425:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(59, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6434:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(60, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6444:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(61, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6454:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(62, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetTimeout’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6591:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(63, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_GetTimeout’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6632:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(64, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Read’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6674:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(65, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6684:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(66, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_ReadLine’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6715:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(125, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Pushback’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6791:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(67, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Write’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6843:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(68, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6870:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(69, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6880:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(70, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Abort’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6899:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(71, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6906:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(72, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_GetOSHandleEx’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7057:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(73, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetCork’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7120:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(158, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7127:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(159, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7140:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(160, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_DisableOSSendDelay’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7157:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(156, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7164:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(157, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7177:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(75, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_CreateEx’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7218:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(76, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7257:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(77, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7307:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(130, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_Bind’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7337:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(79, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7344:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(78, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7362:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(80, error != SOCK_EADDRINUSE ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7378:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(114, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_Connect’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7407:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(82, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7414:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(81, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7433:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(83, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7446:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(84, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7475:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(85, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_WaitMsg’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7503:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(96, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7510:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(95, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_RecvMsg’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7549:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(93, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7556:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(92, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_SendMsg’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7593:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(87, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7600:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(86, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_WipeMsg’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7632:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(98, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7639:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(97, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7659:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(99, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_SetBroadcast’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7677:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(101, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7684:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(100, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7704:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(102, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetReuseAddress’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7866:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(74, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetupSSL’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:8257:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Cannot reset SSL while it is in use"); ^~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c: In function ‘ConnNetInfo_Log’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:114:54: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ LOG_Write(lg, code, subcode, level, THIS_MODULE, CORE_CURRENT_FUNCTION, \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c:1373:9: note: in expansion of macro ‘LOG_WRITE’ LOG_WRITE(lg, NCBI_C_ERRCODE_X, 11, ^~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c: In function ‘URL_ConnectEx’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c:1594:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(2, eLOG_Critical, "[URL_Connect] Bad argument(s)"); ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c:1607:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Critical, ^~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c:1635:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c:1646:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c:1692:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(5, eLOG_Error, x_errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c:1705:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(6, eLOG_Error, x_errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c:1744:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c: In function ‘URL_Connect’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c:1777:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(9, eLOG_Error, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c:1817:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ mat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libcomposition_adjustment.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libcomposition_adjustment.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libcomposition_adjustment.so /bin/ln -f .composition_adjustment.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.composition_adjustment.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/composition_adjustment' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/composition_adjustment' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘x_ReInit’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:273:13: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(4, ReInit, eLOG_Critical, "Partial re-init not allowed"); ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:303:21: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(3, Close, ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:307:21: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(3, ReInit, eLOG_Error, ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘s_Open’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:384:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(5, Open, eLOG_Error, "Failed to open connection"); ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_CreateEx’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:426:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(2, Create, eLOG_Error, "NULL connector"); ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_ReInit’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:448:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(1, ReInit); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:448:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(1, ReInit); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetType’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:456:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(6, GetType, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:456:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(6, GetType, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Description’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:465:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(7, Description, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:465:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(7, Description, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetPosition’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:477:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(30, GetPosition, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:477:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(30, GetPosition, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:490:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(31, GetPosition, eLOG_Error, errbuf, 0); ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_SetTimeout’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:506:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(8, SetTimeout); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:506:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(8, SetTimeout); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:546:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(9, SetTimeout, eLOG_Error, errbuf, eIO_InvalidArg); ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetTimeout’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:561:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(10, GetTimeout, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:561:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(10, GetTimeout, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:569:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(11, GetTimeout, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:584:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(12, GetTimeout, eLOG_Error, errbuf, 0); ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Wait’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:600:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(13, Wait); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:600:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(13, Wait); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:644:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(event != eIO_Read ? 15 : 14, Wait, level, ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘s_CONN_Write’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:665:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(16, Write, eLOG_Critical, "Cannot write data"); ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:707:13: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(17, Write, level, "Unable to write data"); ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Write’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:749:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(18, Write); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:749:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(18, Write); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Pushback’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:784:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(19, Pushback); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:784:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(19, Pushback); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Flush’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:804:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(20, Flush); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:804:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(20, Flush); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:819:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(21, Flush, eLOG_Warning, "Failed to flush"); ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘s_CONN_Read’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:844:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(22, Read, eLOG_Critical, "Cannot read data"); ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:885:17: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(32, Read, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:911:13: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(23, Read, level, "Unable to read data"); ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Read’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:962:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(24, Read); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:962:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(24, Read); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_ReadLine’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1011:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(25, ReadLine); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1011:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(25, ReadLine); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1059:17: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(35, ReadLine, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Status’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1078:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(26, Status); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1078:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(26, Status); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Close’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1117:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(27, Close); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1117:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(27, Close); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_SetCallback’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1137:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(28, SetCallback); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1137:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(28, SetCallback); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1143:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(29, SetCallback, eLOG_Error, errbuf, eIO_InvalidArg); ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetSOCK’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1164:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(36, GetSOCK); ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1164:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(36, GetSOCK); ^~~~~~~~~~~~~ make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd util/sequtil/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=sequtil UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/sequtil' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/sequtil TMPL=sequtil -w -j --jobserver-fds=3,4 all cd util/creaders/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=creaders UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/creaders' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/creaders TMPL=creaders -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connector.c:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connector.c: In function ‘METACONN_Remove’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connector.c:41:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connector.c:63:13: note: in expansion of macro ‘METACONN_LOG’ METACONN_LOG(34, eLOG_Error, ^~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connector.c: In function ‘METACONN_Insert’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connector.c:41:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connector.c:92:9: note: in expansion of macro ‘METACONN_LOG’ METACONN_LOG(33, eLOG_Error, ^~~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket_connector.c:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket_connector.c: In function ‘s_VT_Open’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket_connector.c:171:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(163, eLOG_Error, ^~~~~~~~~~~ cbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_util.c -o ncbi_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_Adjust’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:367:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(2, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:382:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(17, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:408:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:423:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(18, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:433:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:457:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_Connect’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:560:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:700:25: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(20, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_ConnectAndSend’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:911:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(6, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c: In function ‘x_ReadChunkHead’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1042:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(23, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_ReadData’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1113:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(24, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1137:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(25, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_ReadHeader’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1211:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(7, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1248:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, level, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:195:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1310:9: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(9, fatal ? eLOG_Error : eLOG_Note, hdr, size, ^~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1327:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(22, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:195:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1346:17: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(9, eLOG_Note, hdr, size, ^~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1394:25: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(10, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1553:21: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1569:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(11, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1624:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(19, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1629:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(12, err && !(uuu->flags & fHTTP_SuppressMessages) ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1640:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:195:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1648:17: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(14, eLOG_Note, s, n, ^~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1657:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(15, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_Read’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1828:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(16, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1872:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(21, eLOG_Warning, ^~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:115: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Create’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:243:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:264:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(2, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_AttachFast’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:288:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:297:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Attach’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:326:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(34, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c: In function ‘s_HEAP_Find’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:422:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Alloc’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:630:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(6, eLOG_Warning, "Heap Alloc: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:636:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:683:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Free’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:805:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(10, eLOG_Warning, "Heap Free: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:811:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(11, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:824:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:832:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(12, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:844:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(14, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_FreeFast’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:856:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(15, eLOG_Warning, "Heap Free: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:862:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(16, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:876:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(17, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:887:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(18, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:894:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(19, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Trim’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:916:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(30, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:951:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(31, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:978:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(32, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c: In function ‘s_HEAP_Walk’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:1000:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(28, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:1014:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(26, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:1017:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(27, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:1029:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(23, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:1116:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(21, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:1131:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(20, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:1149:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(22, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:1160:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(24, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Walk’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:1176:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(29, eLOG_Warning, "Heap Walk: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Destroy’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:1278:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(33, eLOG_Error, ^~~~~~~~~~~ cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=gene_info UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/creaders' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/creaders/alnread.c -o alnread.o /bin/rm -f libcreaders.so .libcreaders.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libcreaders.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC alnread.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcreaders.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libcreaders.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libcreaders.so /bin/ln -f .creaders.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.creaders.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/creaders' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/creaders' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service.c:40: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service.c: In function ‘x_ServiceName’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service.c:84:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service.c:93:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service.c: In function ‘x_Open’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service.c:321:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_dispd.c:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_dispd.c: In function ‘s_Resolve’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_dispd.c:198:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Error, ^~~~~~~~~~~ TRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service.c -o ncbi_service.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOUIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_OpenDispatcher’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c:94:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_ParseHeader’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c:169:49: warning: format ‘%n’ expects argument of type ‘int *’, but argument 7 has type ‘unsigned int *’ [-Wformat=] if (sscanf(header, "%u.%u.%u.%u%n", &i1, &i2, &i3, &i4, &n) < 4 ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c:170:51: warning: format ‘%n’ expects argument of type ‘int *’, but argument 5 has type ‘unsigned int *’ [-Wformat=] || sscanf(header + n, "%hu%x%n", &uuu->port, &tkt, &m) < 2 ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_Open’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c:821:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c:847:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_VT_Open’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c:1036:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(6, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp: In member function ‘void ncbi::CGeneInfo::ToString(std::__cxx11::string&, bool, const string&, unsigned int) const’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp:177:60: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(GetDescription(), " ", strDescrWords); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/sequtil' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.so .libsequtil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libsequtil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libsequtil.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libsequtil.so /bin/ln -f .sequtil.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.sequtil.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/sequtil' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/sequtil' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c: In function ‘s_SendRcpt’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:389:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(3, "Recipient address is too long"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:392:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:400:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(4, write_error); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:403:13: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(5, proto_error, buf); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c: In function ‘CORE_SendMailEx’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:455:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(6, "Invalid magic cookie"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:460:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(7, "At least one message recipient must be specified"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:470:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(8, "Cannot connect to sendmail", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:477:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(9, "Protocol error in connection init", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:482:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(10, "Unable to get local host name"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:487:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(11, "Write error in HELO command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:490:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(12, "Protocol error in HELO command", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:495:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(13, "Write error in MAIL command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:498:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(14, "Protocol error in MAIL command", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:519:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(15, "Write error in DATA command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:521:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(16, "Protocol error in DATA command", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:552:21: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(32, "Write error in sending Date"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:559:21: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(33, "Write error in sending From"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:567:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(17, "Write error in sending Subject"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:574:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(18, "Write error in sending To"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:581:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(19, "Write error in sending Cc"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:585:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(2, eLOG_Warning, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:596:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(20, "Write error in sending mailer information"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:623:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(21, "Write error while sending custom header"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:626:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(22, "Header write error"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:628:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(23, "Write error while finalizing custom header"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:636:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(24, "Write error in message body delimiter"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:662:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(25, "Write error while sending message body"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:665:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(26, "Body write error"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:668:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(27, "Write error while finalizing message body"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:671:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(28, "Write error while finalizing message"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:676:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(29, "Protocol error in sending message", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:679:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(30, "Write error in QUIT command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:681:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(31, "Protocol error in QUIT command", buffer); ^~~~~~~~~~~~~~~~ cd connect/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=connect UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/connect' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect TMPL=connect -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/run_with_lock: Adjusting base from make_connect to make__connect_common per /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/.#lock-map. Waiting for /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/connect/make__connect_common.lockIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:50: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPCloseData’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:143:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:148:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:162:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(11, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:166:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:180:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, xxx->send ? eLOG_Error : eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_FTPReply’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:283:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(10, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_FTPCommandEx’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:359:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPLogin’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:592:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPPassive’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:950:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(2, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPXfer’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:1110:21: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_FTPPollCntl’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:1635:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(12, xxx->data ? eLOG_Error : eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_VT_Open’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:1901:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_VT_Write’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:1976:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(6, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_CreateConnector’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:2286:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "fFTP_UseProxy not yet implemented"); ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp: In static member function ‘static void ncbi::CGeneFileUtils::ReadGeneInfo(ncbi::CNcbiIfstream&, int, ncbi::CRef&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:161:42: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(strBuf, "\t", strItems); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/gene_info_reader/file_utils.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ RCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_local.c -o ncbi_local.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_version.c -o ncbi_version.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:39: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_StringConcat’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:433:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_StringNConcat’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:458:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_RegGet’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:483:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:497:13: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_MemAlloc, eLOG_Warning, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_GetLBOSAddressEx’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:565:5: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Trace, "Getting LBOS addresses..."); ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:579:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Use of custom LBOS address was " ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:586:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Did not manage to copy custom " ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:594:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Trying to find LBOS using " ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:604:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Trying to find LBOS in " ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ReadLbosresolver’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:723:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("LBOS mapper: " ^~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:731:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_ReadLBOSResolve: " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:739:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ^~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:756:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (s_LBOS_Lbosresolver == NULL) ^~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:759:9: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ s_LBOS_Lbosresolver = strdup(str + 7); ^~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:39: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ConnectURL’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:822:5: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Note, ("Parsing URL \"%s\"", url)); ^~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:824:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Cannot parse URL"); ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:827:5: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Note, ("Creating HTTP%s connector", ^~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:834:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Cannot create HTTP connector"); ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:837:5: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Note, "Creating connection"); ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:839:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Cannot create connection"); ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_UrlReadAll’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:898:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_UrlReadAll: No RAM. " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:910:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned " ^~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:938:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:952:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer shrink error, using " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ResolveIPPort’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:984:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1043:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_FillCandidates’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1183:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ("Trying to find servers of \"%s\" with " ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1189:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ("Ho servers of \"%s\" found by LBOS", ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1194:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ("Found %u servers of \"%s\" with " ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1207:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_CheckAnnounceArgs’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1237:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1244:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, missing http:// or " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1254:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1264:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, incorrect port."); ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1268:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1273:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1278:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_CheckDeannounceArgs’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1292:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1298:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1303:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1308:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Replace0000WithIP’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1393:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1401:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1408:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ConstructData’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1552:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Error, "Could not allocate memory for LBOS mapper"); ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Initialize’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1623:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Trace, "No DTAB in registry"); ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1625:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1634:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Note, "LBOS is turned ON in config."); ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1636:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1652:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ParseHeader’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1700:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned status " ^~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Reset’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1763:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_Reset: No RAM. " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘SERV_LBOS_Open’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1889:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Mask was provided instead of service name. " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1897:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "\"iter->name\" is null, not able " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1912:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Could not concatenate dbaf with service " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1927:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1936:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Announce’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2061:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Announce failed. No LBOS found."); ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2066:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("Announce failed. " ^~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2075:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2085:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "g_LBOS_Announce: LBOS answered 200 OK, but " ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2098:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("Announce failed. " ^~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_Announce’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2164:13: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Critical, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_AnnounceFromRegistry’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2233:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(eLBOS_InvalidArgs, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2240:53: warning: format ‘%d’ expects argument of type ‘int *’, but argument 3 has type ‘unsigned int *’ [-Wformat=] if (strlen(port_str) > 5 || (sscanf(port_str, "%d", &port) != 1) || ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:39: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_Deannounce’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2355:13: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_DNSResolve, eLOG_Critical, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_DeannounceAll’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2413:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_MemAlloc, eLOG_Warning, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_CheckConfArgs’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2465:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Warning, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2472:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(eLBOS_InvalidArgs, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_ServiceVersionSet’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2564:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Warning, ^~~~~~~~~~ cd html/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=html UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/html' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/html TMPL=html -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.so .libgene_info.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgene_info.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC gene_info.o gene_info_reader.o file_utils.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libgene_info.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libgene_info.so /bin/ln -f .gene_info.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.gene_info.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader' cd corelib/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=test_boost UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/parson.c: In function ‘remove_comments’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/parson.c:282:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for (i = 0; i < (ptr - string) + end_token_len; i++) ^~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/parson.c:284:12: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘for’ string = ptr + end_token_len - 1; ^~~~~~ cd util/xregexp/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xregexp UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' /usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' .cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gene_info_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/unit_test TMPL=gene_info_unit_test -w -j --jobserver-fds=3,4 all ...make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp -o gene_info_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gene_info_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lgene_info -lxncbi -ldl -lm -lpthread -o gene_info_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f gene_info_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/gene_info_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' .Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c -o ncbi_lbos.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/parson.c -o parson.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_..make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/html' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/html/node.cpp -o node.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/html/html.cpp -o html.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/html/htmlhelper.cpp -o htmlhelper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/html/page.cpp -o page.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/html/pager.cpp -o pager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/html/selection.cpp -o selection.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/html/components.cpp -o components.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. cd util/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util' .cd serial/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=serial UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/serial' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial TMPL=serial -w -j --jobserver-fds=3,4 all .-fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/html/commentdiag.cpp -o commentdiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/html/indentstream.cpp -o indentstream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/html/html_exception.cpp -o html_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.so .libxhtml.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxhtml.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxhtml.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxhtml.so /bin/ln -f .xhtml.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xhtml.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/html' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/html' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/typeinfo.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd util/compress/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=compress UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api TMPL=compress -w -j --jobserver-fds=3,4 all .In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objectinfo.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ .OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -DIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectiter.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objectiter.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ .In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectiter.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectio.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objectio.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ .In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/typeref.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/serial' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/hookdata.cpp -o hookdata.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/typeinfo.cpp -o typeinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objectinfo.cpp -o objectinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objectiter.cpp -o objectiter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objectio.cpp -o objectio.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/typeref.cpp -o typeref.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-ma.In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypesimpl.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/stdtypes.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ .In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_gnutls.c:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_gnutls.c: In function ‘x_GnuTlsLogger’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_gnutls.c:160:5: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Note, ("GNUTLS%d: %.*s", level, len, message)); ^~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_gnutls.c: In function ‘s_GnuTlsCreate’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_gnutls.c:293:5: warning: ‘gnutls_connection_end_t’ is deprecated [-Wdeprecated-declarations] gnutls_connection_end_t end = (side == eSOCK_Client ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_gnutls.c:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_gnutls.c: In function ‘s_GnuTlsInit’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_gnutls.c:609:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Note, ("GNUTLS V%s (Loglevel=%d)", ^~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_gnutls.c:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:214:33: warning: ‘version’ may be used uninitialized in this function [-Wmaybe-uninitialized] _mess.message = NcbiMessagePlusError(&_mess.dynamic, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_gnutls.c:582:17: note: ‘version’ was declared here const char* version; ^~~~~~~ _REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o /bin/rm -f libxconnect.so .libxconnect.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxconnect.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o parson.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_gnutls.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxncbi -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxconnect.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxconnect.so /bin/ln -f .xconnect.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xconnect.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/connect' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/connect' cd cgi/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=cgi UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/cgi' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/cgi TMPL=cgi -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/run_with_lock: Adjusting base from make_cgi to make__cgi_common per /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/cgi/.#lock-map. make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/compress.cpp -o compress.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/stream.cpp -o stream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/zlib.cpp -o zlib.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/lzo.cpp -o lzo.o /usr/bin/g++ -std. Acquired /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/connect/make__connect_common.lock for PID 30245 (make__connect_common) make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/connect' /bin/rm -f libconnect.so .libconnect.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libconnect.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o parson.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libconnect.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libconnect.so /bin/ln -f .connect.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.connect.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/connect' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/connect' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/enumerated.hpp:35, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/enumerated.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/ptrinfo.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/core/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/core' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core TMPL=blast -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/aa_ungapped.c: In function ‘s_BlastAaWordFinder_TwoHit’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/aa_ungapped.c:484:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/aa_ungapped.c:491:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/aa_ungapped.c: In function ‘s_BlastAaWordFinder_OneHit’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/aa_ungapped.c:751:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/aa_ungapped.c:758:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_engine.c: In function ‘BLAST_PreliminarySearchEngine’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_engine.c:1489:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_engine.c:1627:22: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] ((T_MB_IdxEndSearchIndication)( ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_engine.c:1705:10: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] ((T_MB_IdxEndSearchIndication)( ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/autoptrinfo.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/core' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFEIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/continfo.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_aascan.c: In function ‘BlastChooseProteinScanSubject’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_aascan.c:567:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastAaScanSubject; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_aascan.c:570:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastSmallAaScanSubject; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_aascan.c:575:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastCompressedAaScanSubject; ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/stltypes.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FI/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nalookup.c: In function ‘s_BlastNaHashLookupFinalize’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nalookup.c:1682:36: warning: ISO C forbids passing argument 3 of ‘s_NaHashLookupRemovePolyAWords’ between function pointer and ‘void *’ [-Wpedantic] lookup->hash_callback, lookup->mask); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nalookup.c:1605:13: note: expected ‘TNaLookupHashFunction {aka unsigned int (*)(unsigned char *, unsigned int)}’ but argument is of type ‘void *’ static Int2 s_NaHashLookupRemovePolyAWords(BackboneCell** thin_backbone, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nalookup.c: In function ‘BlastNaHashLookupTableNew’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nalookup.c:1875:27: warning: ISO C forbids assignment between function pointer and ‘void *’ [-Wpedantic] lookup->hash_callback = FNV_hash; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nalookup.c:1911:43: warning: ISO C forbids passing argument 7 of ‘BlastHashLookupIndexQueryExactMatches’ between function pointer and ‘void *’ [-Wpedantic] lookup->hash_callback, ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/core/blast_nalookup.h:36:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nalookup.c:31: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/core/blast_lookup.h:169:6: note: expected ‘TNaLookupHashFunction {aka unsigned int (*)(unsigned char *, unsigned int)}’ but argument is of type ‘void *’ void BlastHashLookupIndexQueryExactMatches(BackboneCell **backbone, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_NaChooseScanSubject’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:291:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastNaScanSubject_8_4; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:293:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastNaScanSubject_Any; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_SmallNaChooseScanSubject’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1320:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_4_1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1322:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1327:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_5_1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1329:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1334:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_6_1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1336:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_6_2; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1338:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1343:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1345:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_2; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1347:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_3; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1349:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1354:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_8_4; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1360:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1364:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_1Mod4; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1368:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_2Mod4; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1372:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_3Mod4; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_MBChooseScanSubject’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2620:24: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_MB_DiscWordScanSubject_TwoTemplates_1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2622:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_18_1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2624:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_21_1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2626:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2634:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_9_1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2636:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_9_2; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2638:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2643:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_1; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2645:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_2; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2647:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_3; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2649:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2655:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2658:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_1Mod4; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2661:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_2Mod4; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2664:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_3Mod4; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2676:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_BlastNaHashLookupRetieveHits’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2705:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (TNaLookupHashFunction)lookup->hash_callback; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_NaHashChooseScanSubject’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2978:32: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void*)s_BlastNaHashScanSubject_Any; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘BlastChooseNucleotideScanSubjectAny’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2997:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_BlastNaScanSubject_Any; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:3000:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:3003:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void*)s_BlastNaHashScanSubject_Any; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:3006:12: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_MBScanSubject_Any; ^ p=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/typemap.cpp -o typemap.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/stdtypes.cpp -o stdtypes.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/enumerated.cpp -o enumerated.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/continfo.cpp -o continfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/stltypes.cpp -o stltypes.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-ti/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘s_IsSeedMasked’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:485:15: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] return !(((T_Lookup_Callback)(lookup_wrap->lookup_callback)) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘BlastNaWordFinder’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1619:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1620:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1632:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1633:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1640:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1641:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1654:23: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘MB_IndexedWordFinder’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1720:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1722:25: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbGetResults)lookup_wrap->read_indexed_db; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘BlastChooseNaExtend’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1792:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_MBLookup; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1796:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1799:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendAligned; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1801:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtend; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1805:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_SmallNaLookup; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1809:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1813:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastSmallNaExtendAlignedOneByte; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1815:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastSmallNaExtend; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1822:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_NaLookup; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1826:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1829:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendAligned; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1831:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtend; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘JumperNaWordFinder’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1971:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1983:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1991:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1998:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:2011:23: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘ShortRead_IndexedWordFinder’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:2184:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:2186:25: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbGetResults)lookup_wrap->read_indexed_db; ^ LE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_message.c -o blast_message.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_options.c -o blast_options.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_util.c: In function ‘BlastProgram2Number’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_util.c:306:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] else if (strcasecmp("mapper", program) == 0) ^~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_util.c:309:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ return 0; ^~~~~~ protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_stat.c -o blast_stat.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_util.c -o blast_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/gapinfo.c -o gapinfo.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopeIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/classinfob.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/link_hsps.c: In function ‘s_FwdCompareHSPs’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/link_hsps.c:133:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] else if (h1->context > h2->context) ^~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/link_hsps.c:136:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ if (h1->query.offset < h2->query.offset) ^~ nmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/greedy_align.c -o greedy_align.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/hspfilter_collector.c -o hspfilter_collector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/hspfilter_besthit.c -o hspfilter_besthit.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/hspfilter_culling.c -o hspfilter_culling.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/link_hsps.c -o link_hsps.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/lookup_util.c -o lookup_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/lookup_wrap.c -o lookup_wrap.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/matrix_freq_ratios.c -o matrix_freq_ratios.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/ncbi_std.c -o ncbi_std.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/ncbi_math.c -o ncbi_math.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_encoding.c -o blast_encoding.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/pattern.c -o pattern.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/phi_extend.c -o phi_extend.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/member.cpp:40: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_program.c -o blast_program.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/archive_zip.cpp:45:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c: In function ‘ncbi::tinfl_status ncbi::tinfl_decompress(ncbi::tinfl_decompressor*, const mz_uint8*, size_t*, ncbi::mz_uint8*, ncbi::mz_uint8*, size_t*, ncbi::mz_uint32)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c:1531:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; ^~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c:1531:47: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘for’ for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; ^~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c: In function ‘void ncbi::tdefl_find_match(ncbi::tdefl_compressor*, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint*, ncbi::mz_uint*)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c:2307:59: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define TDEFL_READ_UNALIGNED_WORD(p) *(const mz_uint16*)(p) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c:2313:19: note: in expansion of macro ‘TDEFL_READ_UNALIGNED_WORD’ mz_uint16 c01 = TDEFL_READ_UNALIGNED_WORD(&d->m_dict[pos + match_len - 1]), s01 = TDEFL_READ_UNALIGNED_WORD(s); ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c:2307:59: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define TDEFL_READ_UNALIGNED_WORD(p) *(const mz_uint16*)(p) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c:2324:13: note: in expansion of macro ‘TDEFL_READ_UNALIGNED_WORD’ if (TDEFL_READ_UNALIGNED_WORD(&d->m_dict[probe_pos + match_len - 1]) == c01) break; ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c:2325:7: note: in expansion of macro ‘TDEFL_PROBE’ TDEFL_PROBE; TDEFL_PROBE; TDEFL_PROBE; ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c:2307:59: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define TDEFL_READ_UNALIGNED_WORD(p) *(const mz_uint16*)(p) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c:2324:13: note: in expansion of macro ‘TDEFL_READ_UNALIGNED_WORD’ if (TDEFL_READ_UNALIGNED_WORD(&d->m_dict[probe_pos + match_len - 1]) == c01) break; ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c:2325:20: note: in expansion of macro ‘TDEFL_PROBE’ TDEFL_PROBE; TDEFL_PROBE; TDEFL_PROBE; ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c:2307:59: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define TDEFL_READ_UNALIGNED_WORD(p) *(const mz_uint16*)(p) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c:2324:13: note: in expansion of macro ‘TDEFL_READ_UNALIGNED_WORD’ if (TDEFL_READ_UNALIGNED_WORD(&d->m_dict[probe_pos + match_len - 1]) == c01) break; ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c:2325:33: note: in expansion of macro ‘TDEFL_PROBE’ TDEFL_PROBE; TDEFL_PROBE; TDEFL_PROBE; ^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c:2327:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (!dist) break; q = (const mz_uint16*)(d->m_dict + probe_pos); if (TDEFL_READ_UNALIGNED_WORD(q) != s01) continue; p = s; probe_len = 32; ^~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c:2327:23: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ if (!dist) break; q = (const mz_uint16*)(d->m_dict + probe_pos); if (TDEFL_READ_UNALIGNED_WORD(q) != s01) continue; p = s; probe_len = 32; ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c:2307:59: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define TDEFL_READ_UNALIGNED_WORD(p) *(const mz_uint16*)(p) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c:2337:13: note: in expansion of macro ‘TDEFL_READ_UNALIGNED_WORD’ c01 = TDEFL_READ_UNALIGNED_WORD(&d->m_dict[pos + match_len - 1]); ^~~~~~~~~~~~~~~~~~~~~~~~~ MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/split_query.c -o split_query.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/classinfo.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/cgi' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/cgi/cgiapp.cpp -o cgiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/cgi/cgictx.cpp -o cgictx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/cgi/ncbires.cpp -o ncbires.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/cgi/ref_args.cpp -o ref_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/cgi/cgi_run.cpp -o cgi_run.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6-Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/jumper.c -o jumper.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o /bin/rm -f libblast.so .libblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lcomposition_adjustment -lxconnect -ltables -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libblast.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libblast.so /bin/ln -f .blast.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.blast.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/core' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/core' me -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/memberid.cpp -o memberid.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/memberlist.cpp -o memberlist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/item.cpp -o item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/classinfob.cpp -o classinfob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. 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/build/ncbi-blast+-GcQwD4/ncbi-b=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/tar.cpp -o tar.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/archive.cpp -o archive.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/archive_.cpp -o archive_.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.so .libxcompress.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcompress.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxutil -lxncbi -lbz2 -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxcompress.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxcompress.so /bin/ln -f .xcompress.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xcompress.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/api' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/variant.cpp:39: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/choice.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/choiceptr.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/choiceptr.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/aliasinfo.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objistr.cpp:46: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objostr.cpp:43: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objcopy.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objcopy.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectiter.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/iterator.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ last+-2.6.0/c++/src/serial/choice.cpp -o choice.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/choiceptr.cpp -o choiceptr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/aliasinfo.cpp -o aliasinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objistr.cpp -o objistr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objostr.cpp -o objostr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objcopy.cpp -o objcopy.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/iterator.cpp -o iterator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/serial.cpp -o serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protectoIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/serial.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/delaybuf.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/pack_string.hpp:33, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/pack_string.cpp:32: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/exception.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objhook.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ r-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/delaybuf.cpp -o delaybuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/pack_string.cpp -o pack_string.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/exception.cpp -o exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objhook.cpp -o objhook.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objlist.cpp -o objlist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objstack.cpp -o objstack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objostrasn.cpp -o objostrasn.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/buIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objostrasn.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objostrasn.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistrasn.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objistrasn.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objostrasnb.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objostrasnb.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistrasnb.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objistrasnb.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objostrxml.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objostrxml.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistrxml.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objistrxml.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ .0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/cgi/cgi_util.cpp -o cgi_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/cgi/cgi_session.cpp -o cgi_session.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.so .libxcgi.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcgi.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxcgi.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxcgi.so /bin/ln -f .xcgi.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xcgi.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/cgi' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/cgi' ild/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objistrasn.cpp -o objistrasn.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objostrasnb.cpp -o objostrasnb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objistrasnb.cpp -o objistrasnb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objostrxml.cpp -o objostrxml.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objistrxml.cpp -o objistrxml.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objostrjson.cpp -o objostrjson.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objistrjson.cpp -o objistrjson.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/seIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objostrjson.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objostrjson.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistrjson.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/objistrjson.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/serialobject.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/rpcbase_impl.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/rpcbase.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ rial/serializable.cpp -o serializable.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/serialobject.cpp -o serialobject.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/pathhook.cpp -o pathhook.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.so .libxser.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxser.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxser.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxser.so /bin/ln -f .xser.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xser.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/serial' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/serial' cd serial/datatool/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=datatool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/serial/datatool' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool TMPL=datatool -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/statictype.cpp:40: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/datatool.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/enumerated.hpp:35, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/enumtype.cpp:39: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/reftype.cpp:43: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/serial/datatool' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/datatool.cpp -o datatool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/type.cpp -o type.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/namespace.cpp -o namespace.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/statictype.cpp -o statictype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/reftype.cpp -o reftype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/unitype.cpp -o unitype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-formatIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/unitype.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG 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/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/stdstr.cpp -o stdstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/classstr.cpp -o classstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/enumstr.cpp -o enumstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/stlstr.cpp -o stlstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE 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-fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/value.cpp -o value.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/mcontainer.cpp -o mcontainer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/module.cpp -o module.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/moduleset.cpp -o moduleset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/generate.cpp -o generate.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG 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-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/exceptions.cpp -o exceptions.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/comments.cpp -o comments.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/srcutil.cpp -o srcutil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/dtdaux.cpp -o dtdaux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/dtdlexer.cpp -o dtdlexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/dtdparser.cpp -o dtdparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/rpcgen.cpp -o rpcgen.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/aliasstr.cpp -o aliasstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/xsdlexer.cpp -o xsdlexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/wsdllexer.cpp -o wsdllexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread -o datatool /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f datatool /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/serial/datatool' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/serial/datatool' cd objects/general/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objects/biblio/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objects/medline/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objects/pub/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/biblio' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/general' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medline' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh general all make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pub' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh medline all cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh biblio all cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pub && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh pub all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pub' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pub' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pub' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pub' /usr/bin/make[4] (Makefile.medline.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medline' cd objects/seqcode/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqcode' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqcode && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh seqcode all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio' /usr/bin/make[4] (Makefile.pub.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pub' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio' cd objects/seq/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.general.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/general' cd objects/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastdb' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastdb && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh blastdb all /usr/bin/make[4] (Makefile.biblio.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/biblio' cd objects/genomecoll/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/genomecoll' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh genome_collection all /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/Makefile.sources builddir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -w -j --jobserver-fds=3,4 all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqcode' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqcode' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqcode' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqcode' /usr/bin/make[4] (Makefile.seqcode.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqcode' cd objects/seqset/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastdb' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastdb' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqset' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh seqset all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastdb' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastdb' /usr/bin/make[4] (Makefile.blastdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastdb' cd objects/scoremat/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/scoremat' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/scoremat && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh scoremat all make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh gencoll_client all Waiting for /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll/make_asn.lock/usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset' /usr/bin/make[4] (Makefile.seqset.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqset' cd objects/seqedit/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqedit' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/scoremat' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/scoremat' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqedit && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh seqedit all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/scoremat' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/scoremat' /usr/bin/make[4] (Makefile.scoremat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/scoremat' cd objects/seqsplit/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqsplit' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqsplit && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh seqsplit all make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' status=0 ; \ MAKE="/usr/bin/make -w -j --jobserver-fds=3,4"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../$x ; \ (cd $d && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqalign' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqalign' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqblock' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqblock' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub object/usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqedit' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqedit' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqedit' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqedit' /usr/bin/make[4] (Makefile.seqedit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqedit' cd objects/submit/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqsplit' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqsplit' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/submit' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/submit && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh submit all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqsplit' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqsplit' /usr/bin/make[4] (Makefile.seqsplit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqsplit' cd objects/variation/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/variation' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/variation && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh variation all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/submit' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/submit' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/submit' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/submit' /usr/bin/make[4] (Makefile.submit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/submit' cd objects/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blast && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh blast all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/variation' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/variation' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/variation' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/variation' /usr/bin/make[4] (Makefile.variation.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/variation' cd objects/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources s/seqloc/seqloc objects/seq/seq' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqfeat' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqfeat' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqres' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opmmake[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id1' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id1 && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh id1 all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id1' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id1' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id1' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id1' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqres' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqtable' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqtable' make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/scoremat/scoremat.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blast' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blast' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' /usr/bin/make[4] (Makefile.id1.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blast' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh seq all make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blast' /usr/bin/make[4] (Makefile.id1cli.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xnetblastcli.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id1' cd objects/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' cd objects/taxon1/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id2' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id2 && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh id2 all make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon1' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1 && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh taxon1 all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqblock/seqblock.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqres/seqres.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq' /usr/bin/make[4] (Makefile.seq.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' Warning: (110.8) Found multiple [Taxon1-name] taxid._type settings; using the one from line 18 cd objects/blastxml/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh blastxml all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqsplit/seqsplit.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id2' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id2' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id2' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id2' /usr/bin/make[4] (Makefile.taxon1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon1' cd objects/blastxml2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.id2.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml2' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml2 && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh blastxml2 all /usr/bin/make[4] (Makefile.id2cli.lib): Nothing to be done for `export-headers'. File blastxml.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id2' cd objects/entrez2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.blastxml.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml' cd objects/gbseq/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/gbseq' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/gbseq && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh gbseq all cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/entrez2 && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh entrez2 all File blastxml2.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml2' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m blastxml2.asn -M "" -oA -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml2' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml2' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml2' /usr/bin/make[4] (Makefile.blastxml2.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml2' cd objects/medlars/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medlars' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medlars && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh medlars all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/gbseq' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m gbseq.asn -M "" -oA -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/gbseq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/entrez2' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/entrez2' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/gbseq' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/entrez2' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/gbseq' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/entrez2' /usr/bin/make[4] (Makefile.entrez2.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.gbseq.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/gbseq' cd objects/pubmed/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pubmed' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pubmed && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh pubmed all /usr/bin/make[4] (Makefile.entrez2cli.lib): Nothing to be done for `export-headers'. /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medlars' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medlars -or objects/medlars -odi -od medlars.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medlars' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medlars' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medlars' /usr/bin/make[4] (Makefile.medlars.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medlars' cd objects/mla/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/mla && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh mla all make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' cd objects/taxon3/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon3' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon3 && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh taxon3 all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pubmed' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pubmed' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pubmed' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pubmed' /usr/bin/make[4] (Makefile.pubmed.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pubmed' cd objects/valid/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/valid' cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/valid && /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh valid all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medlars/medlars.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pubmed/pubmed.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/mla' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA -oc mla -or objects/mla -odi -od mla.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/mla' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/mla' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/mla' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon3' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon3' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon3' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon3' /usr/bin/make[4] (Makefile.mla.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.taxon3.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon3' cd objects/general/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=general UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/general' /usr/bin/make[4] (Makefile.mlacli.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general TMPL=general -w -j --jobserver-fds=3,4 all make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' cd objects/seqcode/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqcode UNIX_PROJ="" sources= configurables=configurables.null /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/valid' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/valid' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/valid' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqcode' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/valid' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqcode TMPL=seqcode -w -j --jobserver-fds=3,4 all /usr/bin/make[4] (Makefile.valid.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/valid' cd objects/blastxml/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastxml UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml TMPL=blastxml -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqcode/Seq_code_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqcode/Seq_code_set.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqcode/Seq_code_set.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqcode/seqcode__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blastxml/BlastOutput_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blastxml/BlastOutput.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml/BlastOutput.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml/blastxml__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pub' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pub' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqcode' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqcode' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastdb' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastdb' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset' ./usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/scoremat' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/scoremat' Acquired /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll/make_asn.lock for PID 32034 (make_asn) /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqedit' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqedit' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqsplit' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqsplit' /usr/bin/make[4] (Makefile.genome_collection.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.gencoll_client.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/genomecoll' cd objects/blastxml2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastxml2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml2' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j --jobserver-fds=3,4 all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/submit' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/submit' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/variation' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/variation' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/scoremat/scoremat.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blast' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blast' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqres' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqtable' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqtable' make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id1' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id1' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqblock/seqblock.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqres/seqres.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqsplit/seqsplit.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id2' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id2' File blastxml.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml2' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m blastxml2.asn -M "" -oA -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml2' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/entrez2' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/entrez2' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/gbseq' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m gbseq.asn -M "" -oA -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/gbseq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medlars' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medlars -or objects/medlars -odi -od medlars.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medlars' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pubmed' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pubmed' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medlars/medlars.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pubmed/pubmed.asn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/mla' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA -oc mla -or objects/mla -odi -od mla.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/mla' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon3' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon3' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/valid' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/valid' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqcode/Seq_code_set_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqcode/seqcode___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml/BlastOutput_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml/blastxml___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blastxml2/BlastOutput2_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blastxml2/BlastOutput2.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml2/BlastOutput2.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml2/blastxml2__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqcode' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.so .libseqcode.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqcode.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqcode__.o seqcode___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libseqcode.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libseqcode.so /bin/ln -f .seqcode.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.seqcode.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqcode' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqcode' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.so .libblastxml.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastxml.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastxml__.o blastxml___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libblastxml.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libblastxml.so /bin/ln -f .blastxml.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.blastxml.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml' cd objects/entrez2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=entrez2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/entrez2 TMPL=entrez2 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml2/BlastOutput2_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml2/blastxml2___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/Date_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/entrez2/E2Reply_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/entrez2/E2Reply.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/entrez2/E2Reply.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/entrez2/entrez2__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/gbseq/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=gbseq UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/gbseq' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/gbseq TMPL=gbseq -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.so .libblastxml2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastxml2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastxml2__.o blastxml2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libblastxml2.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libblastxml2.so /bin/ln -f .blastxml2.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.blastxml2.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml2' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/entrez2/E2Reply_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/entrez2/entrez2___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml2' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/gbseq/GBAltSeqData_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/gbseq/GBAltSeqData.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/gbseq/GBAltSeqData.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/gbseq/gbseq__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/gbseq/GBAltSeqData_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/gbseq/gbseq___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/uoconv.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/uoconv.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.so .libentrez2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libentrez2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC entrez2__.o entrez2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libentrez2.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libentrez2.so /bin/ln -f .entrez2.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.entrez2.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' cd objects/entrez2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=entrez2cli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/entrez2 TMPL=entrez2cli -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/entrez2/entrez2_client_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/entrez2/entrez2_client.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/entrez2/entrez2_client.cpp:42: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/gbseq' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.so .libgbseq.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgbseq.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC gbseq__.o gbseq___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libgbseq.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libgbseq.so /bin/ln -f .gbseq.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.gbseq.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/gbseq' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/gbseq' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/entrez2/entrez2_client_.cpp:39: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/general' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general__.cpp -o general__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/general___.cpp -o general___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.so .libgeneral.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgeneral.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC general__.o general___.o uoconv.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxser -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libgeneral.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libgeneral.so /bin/ln -f .general.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.general.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/general' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/general' cd objects/biblio/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=biblio UNIX_PROJ="" sources= configurables=configurables.null cd objects/valid/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=valid UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/biblio' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/valid' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio TMPL=biblio -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/valid TMPL=valid -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/biblio/Affil_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/biblio/Affil.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/Affil.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/misc/sequence_util_macros.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/valid/Comment_rule.cpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/valid/valid__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.so .libentrez2cli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libentrez2cli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC entrez2_client.o entrez2_client_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lentrez2 -lxconnect -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libentrez2cli.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libentrez2cli.so /bin/ln -f .entrez2cli.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.entrez2cli.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/valid/valid__.cpp:2:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/valid/Comment_rule.cpp: In member function ‘ncbi::objects::CComment_rule::TErrorList ncbi::objects::CComment_rule::IsValid(const ncbi::objects::CUser_object&) const’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/valid/Comment_rule.cpp:290:28: warning: unused variable ‘sev’ [-Wunused-variable] CField_rule::TSeverity sev; ^~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/Affil_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/citation_base.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/valid/Comment_rule_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/valid/valid___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/biblio' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.so .libbiblio.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libbiblio.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC biblio__.o biblio___.o citation_base.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lgeneral -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libbiblio.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libbiblio.so /bin/ln -f .biblio.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.biblio.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/biblio' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/biblio' cd objects/medline/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=medline UNIX_PROJ="" sources= configurables=configurables.null cd objects/medlars/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=medlars UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medline' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medlars' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medlars TMPL=medlars -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline TMPL=medline -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/valid' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/valid/valid__.cpp -o valid__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.so .libvalid.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libvalid.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC valid__.o valid___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lgeneral -lxser -lxregexp -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libvalid.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libvalid.so /bin/ln -f .valid.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.valid.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/valid' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/valid' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/medlars/Medlars_entry_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/medlars/Medlars_entry.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medlars/Medlars_entry.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medlars/medlars__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/medline/DocRef_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/medline/DocRef.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline/DocRef.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline/medline__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medlars/Medlars_entry_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medlars/medlars___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline/DocRef_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline/medline___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medlars' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.so .libmedlars.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmedlars.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC medlars__.o medlars___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lbiblio -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libmedlars.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libmedlars.so /bin/ln -f .medlars.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.medlars.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medlars' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medlars' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medline' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline/medline__.cpp -o medline__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.so .libmedline.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmedline.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC medline__.o medline___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lbiblio -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libmedline.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libmedline.so /bin/ln -f .medline.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.medline.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medline' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medline' cd objects/pub/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=pub UNIX_PROJ="" sources= configurables=configurables.null cd objects/pubmed/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=pubmed UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pubmed' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pub' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pubmed TMPL=pubmed -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pub TMPL=pub -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/pubmed/Pubmed_entry_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/pubmed/Pubmed_entry.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pubmed/Pubmed_entry.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pubmed/pubmed__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/pub/Pub_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/pub/Pub.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pub/Pub.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pub/pub__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pubmed/Pubmed_entry_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pubmed/pubmed___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pub/Pub_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pub/pub___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pubmed' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.so .libpubmed.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libpubmed.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC pubmed__.o pubmed___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lmedline -lbiblio -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libpubmed.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libpubmed.so /bin/ln -f .pubmed.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.pubmed.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pubmed' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pubmed' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pub' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pub/pub__.cpp -o pub__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.so .libpub.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libpub.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC pub__.o pub___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lmedline -lbiblio -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libpub.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libpub.so /bin/ln -f .pub.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.pub.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pub' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pub' cd objects/seq/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seq UNIX_PROJ="" sources= configurables=configurables.null cd objects/mla/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=mla UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/mla TMPL=mla -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq TMPL=seq -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/mla/Error_val_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/mla/Error_val.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/mla/Error_val.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/mla/mla__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_diag.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/Dense_diag.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:2, from seqalign__.cpp:1: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/Align_def.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/mla/Error_val_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/mla/mla___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqblock/EMBL_block_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqblock/EMBL_block.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqblock/EMBL_block.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqblock/seqblock__.cpp:2, from seqblock__.cpp:1: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function ‘void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1381:69: warning: ‘void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations] SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:3:0, from seqalign__.cpp:1: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909:6: note: declared here void CDense_seg::RemapToLoc(TDim row, const CSeq_loc& loc, ^~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1385:62: warning: ‘void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations] (*std_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:42:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Std_seg.hpp:79:26: note: declared here NCBI_DEPRECATED void RemapToLoc(TDim row, ^~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1390:68: warning: ‘void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations] (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1364:6: note: declared here void CSeq_align::RemapToLoc(TDim row, ^~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/mla/mla__.cpp -o mla__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.so .libmla.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmla.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC mla__.o mla___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lmedlars -lpub -lpubmed -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libmla.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libmla.so /bin/ln -f .mla.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.mla.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqloc/seqloc__.cpp:10:0, from seqloc__.cpp:1: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqloc/Seq_id.cpp: In static member function ‘static ncbi::SIZE_TYPE ncbi::objects::CSeq_id::ParseIDs(ncbi::objects::CBioseq_Base::TId&, const ncbi::CTempString&, ncbi::objects::CSeq_id::TParseFlags)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqloc/Seq_id.cpp:1859:60: warning: ‘static std::__cxx11::list& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Split(ss, "|", fasta_pieces, NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2516:31: note: declared here static list& Split( ^~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30:0, from seqfeat__.cpp:1: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp: In static member function ‘static bool ncbi::objects::CPCRPrimerSeq::Fixi(std::__cxx11::string&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp:249:72: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] pos = NStr::Find(seq, "i", pos, NPOS, NStr::eFirst, NStr::eCase); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:42:0, from seqfeat__.cpp:1: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function ‘ncbi::CTempString ncbi::objects::s_AaName(int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (idx > 0 && idx < ArraySize(sc_TrnaList)) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ cd objects/mla/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=mlacli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/mla TMPL=mlacli -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/mla/mla_client_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/mla/mla_client.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/mla/mla_client.cpp:41: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/mla/mla_client_.cpp:39: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/mla/mla_client.cpp -o mla_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.so .libmlacli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmlacli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC mla_client.o mla_client_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lmla -lxconnect -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libmlacli.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libmlacli.so /bin/ln -f .mlacli.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.mlacli.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq__.cpp -o seq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include seqalign__.cpp -o seqalign__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include seqblock__.cpp -o seqblock__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include seqfeat__.cpp -o seqfeat__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include seqloc__.cpp -o seqloc__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include seqres__.cpp -o seqres__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-pIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqres/Byte_graph_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqres/Byte_graph.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqres/Byte_graph.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqres/seqres__.cpp:2, from seqres__.cpp:1: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqtable/BVector_data_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqtable/BVector_data.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqtable/BVector_data.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqtable/seqtable__.cpp:2, from seqtable__.cpp:1: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/Align_def_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/seqalign___.cpp:2, from seqalign___.cpp:1: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqblock/seqblock___.cpp:2, from seqblock___.cpp:1: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ rotector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include seqtable__.cpp -o seqtable__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq___.cpp -o seq___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include seqalign___.cpp -o seqalign___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include seqblock___.cpp -o seqblock___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include seqfeat___.cpp -o seqfeat___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include seqloc___.cpp -o seqloc___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, from seqfeat___.cpp:1: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqloc/seqloc___.cpp:2, from seqloc___.cpp:1: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqres/seqres___.cpp:2, from seqres___.cpp:1: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqtable/seqtable___.cpp:2, from seqtable___.cpp:1: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_data_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_data.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seqport_util.hpp:35, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seqport_util.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_id_tree.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_id_tree.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_id_handle.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_mapper.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_id_mapper.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include seqres___.cpp -o seqres___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include seqtable___.cpp -o seqtable___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_loc_mapper_base.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_loc_mapper_base.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_align_mapper_base.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_align_mapper_base.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function ‘void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef&) const’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_align_mapper_base.cpp:1505:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( row_n == p_row ) { ~~~~~~^~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seqlocinfo.hpp:33, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seqlocinfo.cpp:32: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/sofa_type.hpp:35, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/sofa_map.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_loc_from_string.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_loc_from_string.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.so .libseq.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseq.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqcode -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libseq.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libseq.so /bin/ln -f .seq.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.seq.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' cd objects/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastdb UNIX_PROJ="" sources= configurables=configurables.null cd objects/genomecoll/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=genome_collection UNIX_PROJ="" sources= configurables=configurables.null cd objects/seqset/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqset UNIX_PROJ="" sources= configurables=configurables.null cd objects/variation/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=variation UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/genomecoll' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqset' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastdb' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/variation' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastdb TMPL=blastdb -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll TMPL=genome_collection -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset TMPL=seqset -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/variation TMPL=variation -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/genomecoll/GC_Assemblies_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/genomecoll/GC_Assemblies.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll/GC_Assemblies.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll/genome_collection__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/variation/VariantPlacement_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/variation/VariantPlacement.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/variation/VariantPlacement.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/variation/variation__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_db_mask_info_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_db_mask_info.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastdb/Blast_db_mask_info.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastdb/blastdb__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset/Bioseq_set.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/variation/VariantPlacement_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/variation/variation___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastdb/blastdb___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.so .libblastdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastdb__.o blastdb___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libblastdb.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libblastdb.so /bin/ln -f .blastdb.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.blastdb.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastdb' cd objects/taxon1/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=taxon1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon1' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1 TMPL=taxon1 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1/Taxon1_data.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1/taxon1__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset/Bioseq_set_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll/genome_collection___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/variation' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/variation/variation__.cpp -o variation__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.so .libvariation.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libvariation.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC variation__.o variation___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libvariation.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libvariation.so /bin/ln -f .variation.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.variation.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/variation' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/variation' cd objects/taxon3/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=taxon3 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon3' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon3 TMPL=taxon3 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon3/SequenceOfInt_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon3/SequenceOfInt.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon3/SequenceOfInt.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon3/taxon3__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon3/SequenceOfInt_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon3/taxon3___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/gb_release_file.hpp:35, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset/gb_release_file.cpp:32: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1/Taxon1_data_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1/taxon1___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqset' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.so .libseqset.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqset.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqset__.o seqset___.o gb_release_file.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libseqset.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libseqset.so /bin/ln -f .seqset.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.seqset.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqset' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqset' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/genomecoll' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.so .libgenome_collection.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgenome_collection.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC genome_collection__.o genome_collection___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libgenome_collection.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libgenome_collection.so /bin/ln -f .genome_collection.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.genome_collection.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/genomecoll' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/genomecoll' cd objects/scoremat/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=scoremat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/scoremat' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/scoremat TMPL=scoremat -w -j --jobserver-fds=3,4 all cd objects/seqedit/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqedit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqedit' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqedit TMPL=seqedit -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1/taxon1.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon3/SequenceOfInt_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon3/SequenceOfInt.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon3/taxon3__.hpp:1, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon3/taxon3.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon3/taxon3.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/scoremat/BlockProperty_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/scoremat/BlockProperty.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/scoremat/BlockProperty.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/scoremat/scoremat__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqedit/SeqEdit_Cmd_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqedit/SeqEdit_Cmd.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqedit/SeqEdit_Cmd.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqedit/seqedit__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/scoremat/BlockProperty_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/scoremat/scoremat___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqedit/seqedit___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon3/SequenceOfInt_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon3/SequenceOfInt.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon3/taxon3__.hpp:1, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon3/cached_taxon3.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon3/cached_taxon3.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/scoremat' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.so .libscoremat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libscoremat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC scoremat__.o scoremat___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libscoremat.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libscoremat.so /bin/ln -f .scoremat.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.scoremat.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/scoremat' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/scoremat' cd objects/seqsplit/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqsplit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqsplit' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqsplit TMPL=seqsplit -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistrasn.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1/cache.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Bioseq_Ids_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Bioseq_Ids.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqsplit/ID2S_Bioseq_Ids.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqsplit/seqsplit__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqedit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.so .libseqedit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqedit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqedit__.o seqedit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libseqedit.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libseqedit.so /bin/ln -f .seqedit.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.seqedit.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqedit' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqedit' cd objects/submit/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=submit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/submit' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/submit TMPL=submit -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon3' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon3/cached_taxon3.cpp -o cached_taxon3.o /bin/rm -f libtaxon3.so .libtaxon3.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtaxon3.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC taxon3__.o taxon3___.o taxon3.o cached_taxon3.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxconnect -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libtaxon3.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libtaxon3.so /bin/ln -f .taxon3.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.taxon3.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon3' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon3' cd objects/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blast TMPL=blast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/submit/Contact_info_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/submit/Contact_info.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/submit/Contact_info.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/submit/submit__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqsplit/seqsplit___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blas_get_searc_resul_reply_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blas_get_searc_resul_reply.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blast/Blas_get_searc_resul_reply.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blast/blast__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/submit/Contact_info_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/submit/submit___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blast/blast___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1/utils.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/submit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/submit/submit__.cpp -o submit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.so .libsubmit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libsubmit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC submit__.o submit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqset -lseq -lbiblio -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libsubmit.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libsubmit.so /bin/ln -f .submit.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.submit.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/submit' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/submit' cd objects/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=id1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id1' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id1 TMPL=id1 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/id1/Entry_complexities_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/id1/Entry_complexities.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id1/Entry_complexities.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id1/id1__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqsplit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.so .libseqsplit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqsplit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqsplit__.o seqsplit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libseqsplit.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libseqsplit.so /bin/ln -f .seqsplit.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.seqsplit.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqsplit' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqsplit' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id1/Entry_complexities_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id1/id1___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1/ctreecont.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1/ctreecont.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/NCBI_Blast4_module.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/names.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blast/names.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id1/id1__.cpp -o id1__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.so .libid1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC id1__.o id1___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libid1.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libid1.so /bin/ln -f .id1.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.id1.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id1' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id1' cd objmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=objmgr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr TMPL=objmgr -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_table_setters.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_table_setters.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1/cache.cpp -o cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1/utils.cpp -o utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.so .libtaxon1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtaxon1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxconnect -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libtaxon1.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libtaxon1.so /bin/ln -f .taxon1.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.taxon1.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon1' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon1' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_table_info.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_table_info.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/readers/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xobjread UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/readers' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers TMPL=xobjread -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blast/blast__.cpp -o blast__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blast/blast___.cpp -o blast___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.so .libxnetblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxnetblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast__.o blast___.o names.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lscoremat -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxnetblast.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxnetblast.so /bin/ln -f .xnetblast.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xnetblast.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' cd objects/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=id2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id2' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id2 TMPL=id2 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/read_util.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/id2/ID2S_Reply_Get_Chunk_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/id2/ID2S_Reply_Get_Chunk.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id2/ID2S_Reply_Get_Chunk.cpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id2/id2__.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id2/id2___.cpp:2: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/format_guess_ex.cpp:45: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_annot_info.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_annot_info.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_table_info.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/table_field.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id2/id2__.cpp -o id2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.so .libid2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC id2__.o id2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqsplit -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libid2.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libid2.so /bin/ln -f .id2.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.id2.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id2' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id2' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast_unit_test_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/agp_read.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_read.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_read.cpp: In function ‘ncbi::CRef ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_read.cpp:58:74: warning: ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’ is deprecated [-Wdeprecated-declarations] AgpRead(is, entries, component_id_rule, set_gap_data, component_types); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_read.cpp:33:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_read.cpp: In function ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_read.cpp:74:74: warning: ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’ is deprecated [-Wdeprecated-declarations] AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_read.cpp:33:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_read.cpp: In function ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_read.cpp:123:42: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", fields); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/agp_read.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_read.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/agp_seq_entry.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_seq_entry.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqalign_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqalign_cmp.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_map.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_map_switch.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_map_switch.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/readers' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/read_util.cpp -o read_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_validate_reamake[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp -o seqalign_cmp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp -o seqalign_set_convert.o /bin/rm -f libseqalign_util.a .libseqalign_util.a.stamp ar cr libseqalign_util.a seqalign_cmp.o seqalign_set_convert.o /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqalign_util.a /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libseqalign_util.a /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libseqalign_util.a /bin/ln -f .seqalign_util.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.seqalign_util.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast_app_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=blast_app_util -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_validate_reader.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/blast_app_util.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/blast_app_util.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp: In function ‘Uint4 TestUtil::EndianIndependentBufferHash(const char*, Uint4, Uint4, Uint4)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:257:44: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] Uint4 end_value = *((int *) & end_bytes); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/snp_annot_info.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/snp_annot_info.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp -o test_objmgr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp -o blast_test_util.o /bin/rm -f libblast_unit_test_util.a .libblast_unit_test_util.a.stamp ar cr libblast_unit_test_util.a test_objmgr.o blast_test_util.o /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_unit_test_util.a /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libblast_unit_test_util.a /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libblast_unit_test_util.a /bin/ln -f .blast_unit_test_util.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.blast_unit_test_util.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/annot_types_ci.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/aln_reader.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/aln_reader.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/table_field.cpp -o table_field.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o /usr/bin/g++ -std=gnu+In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/annot_selector.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_loc_cvt.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_loc_cvt.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/bed_reader.cpp:44: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libblast_app_util.a /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.blast_app_util.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd objects/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xnetblastcli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blast TMPL=xnetblastcli -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/blastclient_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/blastclient.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blast/blastclient.cpp:41: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_descr.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_descr_ci.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_descr_ci.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blast/blastclient_.cpp:39: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/cigar.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/cigar.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blast/blastclient.cpp -o blastclient.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.so .libxnetblastcli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxnetblastcli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastclient.o blastclient_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxnetblast -lxconnect -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxnetblastcli.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxnetblastcli.so /bin/ln -f .xnetblastcli.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xnetblastcli.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' cd objtools/blast/services/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast_services UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/services TMPL=blast_services -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/feat_ci.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/feat_ci.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/graph_ci.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/graph_ci.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/services/blast_services.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/fasta.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/fasta.cpp: In member function ‘virtual bool ncbi::objects::CFastaReader::ParseGapLine(const TStr&, ncbi::objects::ILineErrorListener*)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/fasta.cpp:1441:35: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/fasta.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/fasta.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2685:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/annot_object.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/annot_object.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/annot_object.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/annot_object_index.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/annot_object_index.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.so .libblast_services.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblast_services.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast_services.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxnetblastcli -lxnetblast -lxser -lxconnect -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libblast_services.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libblast_services.so /bin/ln -f .blast_services.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.blast_services.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services' +11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/annot_selector.cpp -o annot_selector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/feat_ci.cpp -o feat_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/graph_ci.cpp -o graph_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/annot_object.cpp -o annot_object.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -WformaIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_ci.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/annot_ci.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/data_source.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/tse_info.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/tse_info_object.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_entry_info.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/bioseq_base_info.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_base_info.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/fasta_aln_builder.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_set_info.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/featuredump.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/getfeature.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/getfeature.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ t -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/annot_ci.cpp -o annot_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/tse_info.cpp -o tse_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/bioseq_base_info.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/bioseq_info.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_info.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/data_source.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/data_source.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/gff_reader.hpp:48, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/scope_info.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/priority.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp: In member function ‘virtual bool ncbi::objects::CGFFReader::x_ParseStructuredComment(const TStr&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp:408:55: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "# \t", v, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2685:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp: In member function ‘virtual ncbi::CRef ncbi::objects::CGFFReader::x_ParseFeatureInterval(const TStr&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp:479:55: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", v, NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2685:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp:482:58: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, " \t", v, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2685:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp: In member function ‘virtual void ncbi::objects::CGFFReader::x_ParseV3Attributes(ncbi::objects::CGFFReader::SRecord&, const TStrVec&, ncbi::SIZE_TYPE&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp:930:53: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(v[i], ";", v2, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp:938:45: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(values, ",", vals); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/prefetch_impl.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/prefetch_impl.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/data_source.cpp -o data_source.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/priority.cpp -o priority.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/scope.cpp -o scope.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6der.cpp -o agp_validate_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/cigar.cpp -o cigar.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/fasta.cpp -o fasta.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp -o gff_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/prefetch_actions.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/prefetch_actions.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/heap_scope.cpp:42: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/scope.cpp:41: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Object_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Object_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/track_data.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/scope_impl.cpp:41: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/scope_info.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/scope_info.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/tse_handle.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/tse_handle.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/microarray_reader.cpp:44: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/phrap.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_map.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_map.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_map.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_map_ci.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_map_ci.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Bioseq_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Bioseq_set.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_set_handle.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_entry_ci.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_entry_ci.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_annot_ci.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_annot_ci.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ .0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/heap_scope.cpp -o heap_scope.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/scope_impl.cpp -o scope_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/scope_info.cpp -o scope_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/tse_handle.cpp -o tse_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_map.cpp -o seq_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopeIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/reader_base.cpp:44: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_table_ci.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_table_ci.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/reader_base.cpp: In member function ‘virtual bool ncbi::objects::CReaderBase::xIsTrackTerminator(const ncbi::CTempString&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/reader_base.cpp:650:41: warning: ‘static ncbi::CTempString ncbi::NStr::TruncateSpaces(ncbi::CTempString, ncbi::NStr::ETrunc)’ is deprecated [-Wdeprecated-declarations] return (NStr::TruncateSpaces(strLine) == "###"); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/reader_base.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2212:24: note: declared here static CTempString TruncateSpaces(const CTempString str, ^~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_entry_handle.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_handle.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Bioseq_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Bioseq_set.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_set_handle.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_set_handle.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/readfeat.cpp:39: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/readfeat.cpp: In function ‘ncbi::CRef ncbi::objects::{anonymous}::GetBestId(const TId&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/readfeat.cpp:146:29: warning: large integer implicitly truncated to unsigned type [-Woverflow] Uint1 best_weight = UINT_MAX; ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/readfeat.cpp: In constructor ‘ncbi::objects::CFeature_table_reader_imp::CFeature_table_reader_imp(ncbi::ILineReader*, unsigned int, ncbi::objects::ILineErrorListener*)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/readfeat.cpp:438:18: warning: ‘ncbi::objects::CFeature_table_reader_imp::m_reader’ will be initialized after [-Wreorder] ILineReader* m_reader; ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/readfeat.cpp:435:18: warning: ‘unsigned int ncbi::objects::CFeature_table_reader_imp::m_line_num’ [-Wreorder] unsigned int m_line_num; ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/readfeat.cpp:789:1: warning: when initialized here [-Wreorder] CFeature_table_reader_imp::CFeature_table_reader_imp(ILineReader* reader, unsigned int line_num, ILineErrorListener* pMessageListener) ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/tse_handle.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_annot_handle.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_annot_handle.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/align_ci.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/align_ci.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/data_loader.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ nmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_handle.cpp -o bioseq_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_annot_handle.cpp -o seq_annot_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/align_ci.cpp -o align_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/data_loader.cpp -o data_loader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-securIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/handle_range.hpp:35, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/handle_range.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/rm_reader.cpp:43: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/handle_range.hpp:35, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/handle_range_map.hpp:35, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/handle_range_map.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/rm_reader.cpp: In member function ‘virtual bool ncbi::objects::CRepeatMaskerReader::ParseRecord(const string&, ncbi::objects::SRepeatRegion&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/rm_reader.cpp:893:43: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] if ( NStr::Split( line, " \t", values ).size() < MIN_VALUE_COUNT ) { ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/rm_reader.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/object_manager.cpp:40: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_vector.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/track_data.cpp -o track_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/phrap.cpp -o phrap.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/reader_base.cpp -o reader_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/readfeat.cpp -o readfeat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_vector_ci.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Object_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Object_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/wiggle_reader.cpp:41: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_descr.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_descr_ci.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seqdesc_ci.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seqdesc_ci.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ ity -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/handle_range.cpp -o handle_range.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/objmgr_exception.cpp -o objmgr_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/handle_range_map.cpp -o handle_range_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/object_manager.cpp -o object_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_vector.cpp -o seq_vector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_vector_ci.cpp -o seq_vector_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seqdesc_ci.cpp -o seqdesc_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_split_info.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/tse_split_info.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_chunk_info.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/tse_chunk_info.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_ci.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_ci.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/gff3_sofa.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff3_sofa.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/annot_type_index.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/annot_type_index.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff3_reader.cpp:44: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_loc_mapper.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_loc_mapper.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_align_mapper.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_align_mapper.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/annot_collector.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ ANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/annot_collector.cpp -o annot_collector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader_factory.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/data_loader_factory.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gtf_reader.cpp:44: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/annot_collector.cpp: In member function ‘bool ncbi::objects::CAnnot_Collector::x_SearchMapped(const ncbi::objects::CSeqMap_CI&, ncbi::objects::CSeq_loc&, const ncbi::objects::CSeq_id_Handle&, const ncbi::objects::CHandleRange&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/annot_collector.cpp:3509:72: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if ( m_SearchSegments != numeric_limits::max() && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ x_MaxSearchSegmentsLimitIsReached() || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_feat_handle.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/mapped_feat.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/mapped_feat.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_feat_handle.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_feat_handle.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Object_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Object_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff2_data.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqres/Seq_graph_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqres/Seq_graph.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_graph_handle.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_graph_handle.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff2_data.cpp: In static member function ‘static void ncbi::objects::CGff2Record::TokenizeGFF(std::vector&, const ncbi::CTempStringEx&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff2_data.cpp:221:68: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::TSplitFlags, std::vector*, ncbi::CTempString_Storage*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(in_line, "\t", columns, NStr::fSplit_MergeDelims); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff2_data.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2675:28: note: declared here vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_align_handle.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_align_handle.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/tse_assigner.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/scope_transaction.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ .6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/scope_transaction_impl.cpp In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/scope_transaction_impl.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff2_reader.cpp:44: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/edit_commands_impl.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/bioseq_edit_commands.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_edit_commands.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_entry_edit_commands.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/edit_saver.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/edit_saver.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -o scope_transaction_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/edit_saver.cpp -o edit_saver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /usr/bin/g++ -std=gnu++11 -c -WallIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/edit_saver.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/unsupp_editsaver.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/unsupp_editsaver.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/edit_saver.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/unsupp_editsaver.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/edits_db_saver.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/edits_db_saver.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/annot_finder.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gvf_reader.cpp:44: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/gc_assembly_parser.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/gc_assembly_parser.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split_parser.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff3_sofa.cpp -o gff3_sofa.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_id_sort.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_id_sort.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/vcf_reader.cpp:44: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/Seq_feat_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/Seq_feat.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/best_feat_finder.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/source_mod_parser.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/source_mod_parser.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split_parser.cpp -o split_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.so .libxobjmgr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjmgr.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.oIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/fasta_exception.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/fasta_exception.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxobjmgr.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxobjmgr.so /bin/ln -f .xobjmgr.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xobjmgr.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr' cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqdb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/agp_seq_entry.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/agp_converter.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_converter.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdb.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_converter.cpp: In member function ‘void ncbi::CAgpConverter::LoadChromosomeMap(ncbi::CNcbiIstream&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_converter.cpp:143:44: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(line, " \t", split_line); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_converter.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/ucscregion_reader.cpp:44: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objmgr/util/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/util' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util TMPL=util -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/ucscregion_reader.cpp: In member function ‘void ncbi::objects::CUCSCRegionReader::xSmartFieldSplit(std::vector >&, ncbi::CTempString)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/ucscregion_reader.cpp:184:62: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, " \t.-:", fields, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/ucscregion_reader.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ cd algo/dustmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgodustmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/dustmask' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/dustmask TMPL=xalgodustmask -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/weight.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/struct_cmt_reader.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbbitset.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/struct_cmt_reader.cpp -o struct_cmt_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdatemake[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/dustmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.so .libxalgodustmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgodustmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC symdust.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxalgodustmask.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxalgodustmask.so /bin/ln -f .xalgodustmask.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xalgodustmask.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/dustmask' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/dustmask' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/sequence.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/feature.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbfilter.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/message_listener.cpp -o message_listener.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/readers/line_error.cpp -o line_error.o /bin/rm -f libxobjread.so .libxobjread.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjread.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC read_util.o format_guess_ex.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o aln_reader.o bed_reader.o cigar.o fasta.o fasta_aln_builder.o getfeature.o gff_reader.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_sofa.o gff3_reader.o gtf_reader.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o message_listener.o line_error.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lsubmit -lseqset -lseq -lseqcode -lsequtil -lgeneral -lcreaders -lxutil -lpub -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxobjread.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxobjread.so /bin/ln -f .xobjread.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xobjread.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/readers' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/readers' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/feature.cpp: In function ‘ncbi::objects::feature::ELocationInFrame ncbi::objects::feature::IsLocationInFrame(const ncbi::objects::CSeq_feat_Handle&, const ncbi::objects::CSeq_loc&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/feature.cpp:3357:89: warning: ‘ncbi::objects::sequence::ECompare ncbi::objects::sequence::Compare(const ncbi::objects::CSeq_loc&, const ncbi::objects::CSeq_loc&, ncbi::objects::CScope*)’ is deprecated [-Wdeprecated-declarations] sequence::ECompare cmp = sequence::Compare(cds.GetLocation(), loc, &(cds.GetScope())); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/util/feature.hpp:39:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/feature.cpp:84: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/util/seq_loc_util.hpp:200:20: note: declared here sequence::ECompare Compare(const CSeq_loc& loc1, ^~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbalias.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp:50: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader.cpp:31: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/seqtitle.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/writer.cpp:31: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function ‘std::__cxx11::string ncbi::s_SeqDB_TryPaths(const string&, const string&, char, bool, ncbi::CSeqDB_FileExistence&, bool)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:356:79: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(blast_paths, s_GetPathSplitter(), roads, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/metareg.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/MolInfo_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/MolInfo.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/util/create_defline.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/processors.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THRE/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘void ncbi::objects::sequence::CDeflineGenerator::x_SetFlags(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:804:45: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split( clause, ";", kywds ); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp: In function ‘bool x_EndsWithStrain(const ncbi::CTempString&, const ncbi::CTempString&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:1068:80: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase (taxname, strain, 0, taxname.size() - 1, NStr::eLast); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp: In function ‘std::__cxx11::string s_RemoveBracketedOrgFromEnd(std::__cxx11::string, std::__cxx11::string)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:1709:61: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProtein(const ncbi::objects::CBioseq_Handle&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:1787:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (offset > 0 && offset < m_MainTitle.length()) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp: In function ‘size_t s_TitleEndsInOrganism(std::__cxx11::string&, ncbi::CTempString)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:2400:68: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(title, taxname, 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:2401:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos == idx + 2) { ~~~~^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘void ncbi::objects::sequence::CDeflineGenerator::x_AdjustProteinTitleSuffix(const ncbi::objects::CBioseq_Handle&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:2471:83: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(m_MainTitle, "][", 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘std::__cxx11::string ncbi::objects::sequence::CDeflineGenerator::GenerateDefline(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:2656:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/util/obj_sniff.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/obj_sniff.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In function ‘const string* ncbi::s_CheckUniqueValues(const std::map, std::__cxx11::basic_string >&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2050:37: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(v, ":", items); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In member function ‘void ncbi::CSeqDB_IdRemapper::AddMapping(int, int, const string&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2084:36: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(desc, ":", items); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In function ‘void ncbi::s_GetDetails(const string&, std::__cxx11::string&, std::__cxx11::string&, std::__cxx11::string&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2260:36: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(desc, ":", items); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/seq_loc_util.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/util' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/weight.cpp -o weight.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/sequence.cpp -o sequence.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/feature.cpp -o feature.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2kIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/seq_align_util.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/blob_id.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/seqref.hpp:35, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/seqref.cpp:31: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/blob_id.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/blob_id.cpp:31: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/seq_trimmer.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdboidlist.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:32: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/segmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgosegmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/segmask' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/segmask TMPL=xalgosegmask -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/segmask/segmask.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/segmask/segmask.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function ‘ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector >&, std::vector >&, std::vector&, ncbi::CSeqDBLockHold&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:938:9: warning: variable ‘found_short’ set but not used [-Wunused-but-set-variable] int found_short(-1); ^~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/segmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.so .libxalgosegmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgosegmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC segmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast -lxobjmgr -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxalgosegmask.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxalgosegmask.so /bin/ln -f .xalgosegmask.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xalgosegmask.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/segmask' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/segmask' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/objutil.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbtax.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader_service.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/objutil.cpp: In instantiation of ‘bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/objutil.cpp:1804:81: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/objutil.cpp:1732:57: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ AD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/util/objutil.cpp -o objutil.o /bin/rm -f libxobjutil.so .libxobjutil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjutil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC weight.o sequence.o feature.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxobjmgr -lseqset -lseq -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxobjutil.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxobjutil.so /bin/ln -f .xobjutil.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xobjutil.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/util' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/util' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/info_cache.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objmgr/split/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=id2_split UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/split' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split TMPL=id2_split -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/split/blob_splitter.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/blob_splitter.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/column_reader.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ ast+-2.6.0/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xreader.a /build/ncbi-blast+-GcQwD4/ncbi-blIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ ast+-2.6.0/c++/BUILD/lib/libncbi_xreader.a /bin/rm -f libncbi_xreader.so .libncbi_xreader.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lxconnect -lconnect -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxutil -lxncbi -lz -lbz2 -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xreader.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libncbi_xreader.so /bin/ln -f .ncbi_xreader-static.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xreader-static.dep /bin/ln -f .ncbi_xreader.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xreader.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/split_blob.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader_cache UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/blob_splitter_impl.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ EFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /bin/rm -f libseqdb.so .libseqdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblastdb -lxobjmgr -lseq -lgeneral -lxser -lsequtil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libseqdb.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libseqdb.so /bin/ln -f .seqdb.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.seqdb.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader' cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/id1/reader_id1.hpp:33, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/blob_splitter_parser.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp ar cr libncbi_xreader_id2.a reader_id2.o /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id2.a /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libncbi_xreader_id2.a /bin/rm -f libncbi_xreader_id2.so .libncbi_xreader_id2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC reader_id2.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lxconnect -lconnect -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id2.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libncbi_xreader_id2.so /bin/ln -f .ncbi_xreader_id2-static.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xreader_id2-static.dep /bin/ln -f .ncbi_xreader_id2.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xreader_id2.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp ar cr libncbi_xreader_id1.a reader_id1.o /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id1.a /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libncbi_xreader_id1.a /bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC reader_id1.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lxconnect -lconnect -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id1.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libncbi_xreader_id1.so /bin/ln -f .ncbi_xreader_id1-static.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xreader_id1-static.dep /bin/ln -f .ncbi_xreader_id1.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xreader_id1.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' cd objtools/alnmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=alnmgr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastdb_format UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/alnmgr' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr TMPL=alnmgr -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/aln_builders.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_builders.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp: At global scope: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:128:43: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter(const CSeqFormatter& rhs); ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:130:54: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter& operator=(const CSeqFormatter& rhs); ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:130:54: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter& operator=(const CSeqFormatter& rhs); ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/blob_splitter_maker.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:49:74: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config /* = CSeqFormatterConfig() */) ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:270:72: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] void CSeqFormatter::DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config) ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_cache.a /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libncbi_xreader_cache.a /bin/rm -f libncbi_xreader_cache.so .libncbi_xreader_cache.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_cache.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC reader_cache.o writer_cache.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lxconnect -lconnect -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_cache.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libncbi_xreader_cache.so /bin/ln -f .ncbi_xreader_cache-static.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xreader_cache-static.dep /bin/ln -f .ncbi_xreader_cache.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xreader_cache.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_converters.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/split' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/nIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_generators.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/split/id_range.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/id_range.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_generators.cpp: In function ‘void ncbi::InitSplicedsegFromPairwiseAln(ncbi::objects::CSpliced_seg&, const ncbi::CPairwiseAln&, ncbi::objects::CScope*)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_generators.cpp:538:44: warning: typedef ‘TAlnRngColl’ locally defined but not used [-Wunused-local-typedefs] typedef CAlignRangeCollection TAlnRngColl; ^~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/split/object_splitinfo.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/object_splitinfo.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.so .libncbi_xloader_blastdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_blastdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC bdbloader.o cached_sequence.o local_blastdb_adapter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqdb -lxobjmgr -lseqset -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_blastdb.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libncbi_xloader_blastdb.so /bin/ln -f .ncbi_xloader_blastdb.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xloader_blastdb.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' cd objtools/cleanup/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=cleanup UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/cleanup' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup TMPL=cleanup -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_seqid.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o /bin/rm -f libblastdb_format.so .libblastdb_format.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastdb_format.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqdb -lxobjutil -lxobjmgr -lseq -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libblastdb_format.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libblastdb_format.so /bin/ln -f .blastdb_format.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.blastdb_format.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/split/asn_sizer.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/asn_sizer.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/aln_serial.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_serial.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/split/id_range.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/split/annot_piece.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/annot_piece.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmap.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/split/place_id.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/split/chunk_info.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/chunk_info.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmap.cpp: In member function ‘ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmap.cpp:1467:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (TNumrow row = 0; row < selected_rows.size(); row++) { ~~~~^~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/alnmgr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /us/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp: In function ‘void s_TestPartialAmbigRange(ncbi::CSeqDB&, int, int, int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:79:18: warning: variable ‘wholeL’ set but not used [-Wunused-but-set-variable] int wholeL(0); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/split/asn_sizer.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/size.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmapprint.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cbi-blast+-2.6.0/c++/src/objmgr/split/id_range.cpp -o id_range.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/size.cpp -o size.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.so .libid2_split.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid2_split.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxobjmgr -lseqsplit -lseqset -lseq -lgeneral -lxser -lxcompress -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libid2_split.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libid2_split.so /bin/ln -f .id2_split.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.id2_split.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/split' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/split' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnseq.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmatch.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/cleanup.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/cleanup_utils.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/cleanup_utils.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function ‘static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] match1->m_ChainScore == match2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ match1->m_Score > match2->m_Score || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmatch.cpp: In member function ‘void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] (aln_seq1->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand1 == eNa_strand_minus || ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] aln_seq2->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand2 == eNa_strand_minus || ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] aln_seq2->m_StrandScore < 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand2 != eNa_strand_minus)) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/cleanup.cpp: In function ‘ncbi::SIZE_TYPE ncbi::objects::s_TitleEndsInOrganism(const string&, const string&, ncbi::SIZE_TYPE*)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/cleanup.cpp:2006:73: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] answer = NStr::FindNoCase(sTitle, sPattern, 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/cleanup.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/cleanup.cpp: In function ‘void ncbi::objects::s_RemoveOrgFromEndOfProtein(ncbi::objects::CBioseq&, std::__cxx11::string)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/cleanup.cpp:2060:73: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/cleanup.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmerger.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_Merge()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmerger.cpp:140:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_CreateDenseg()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (start_its_i->second->first != -1) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmerger.cpp:1232:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=writedb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_Merge()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmerger.cpp:151:17: warning: ‘width2’ may be used uninitialized in this function [-Wmaybe-uninitialized] int width1, width2; ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmix.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmix.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmix.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/misc/sequence_util_macros.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/biblio/biblio_macros.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/misc/sequence_macros.hpp:33, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/newcleanupp.cpp:41: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::x_SeqFeatTRNABC(ncbi::objects::CSeq_feat&, ncbi::objects::CTrna_ext&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/newcleanupp.cpp:5893:19: warning: unused variable ‘comment’ [-Wunused-variable] const string &comment = ( FIELD_IS_SET(feat, Comment) ? GET_FIELD(feat, Comment) : kEmptyStr ); ^~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::x_RemoveFlankingQuotes(std::__cxx11::string&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/newcleanupp.cpp:7004:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( ; first_pos <= last_pos ; ++first_pos, --last_pos ) { ~~~~~~~~~~^~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/newcleanupp.cpp:7018:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( first_pos > last_pos ) { ~~~~~~~~~~^~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnseq.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnsegments.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnsegments.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -ldl -lm -lpthread -o seqdb_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f seqdb_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/seqdb_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnsegments.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnsegments.cpp: In member function ‘void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (plus && prev_start_plus_len < start || ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdb_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test TMPL=blastdb_format_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnseq.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp: At global scope: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:128:43: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter(const CSeqFormatter& rhs); ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:130:54: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter& operator=(const CSeqFormatter& rhs); ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:130:54: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter& operator=(const CSeqFormatter& rhs); ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:39:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestNoFormatSpecifier::test_method()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:55:41: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] BOOST_REQUIRE_THROW(CSeqFormatter f(format_spec, db, std::cout), ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/test_boost.hpp:101:9: note: in definition of macro ‘BOOST_CHECK_THROW_IMPL’ S; \ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:39:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestInvalidFormatSpecifiers_Empty::test_method()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:119:57: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] #define NcbiEmptyString NCBI_NS_NCBI::CNcbiEmptyString::Get() ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/test_boost.hpp:101:9: note: in definition of macro ‘BOOST_CHECK_THROW_IMPL’ S; \ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:120:19: note: in expansion of macro ‘NcbiEmptyString’ #define kEmptyStr NcbiEmptyString ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:62:41: note: in expansion of macro ‘kEmptyStr’ BOOST_REQUIRE_THROW(CSeqFormatter f(kEmptyStr, db, std::cout), ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestInvalidFormatSpecifiers_InvalidAlgoId::test_method()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:69:25: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config; ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:39:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:71:40: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] BOOST_REQUIRE_THROW(CSeqFormatter f("%m", db, std::cout, config), ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/test_boost.hpp:101:9: note: in definition of macro ‘BOOST_CHECK_THROW_IMPL’ S; \ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestValidFormatSpecifiers::test_method()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:78:25: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config; ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:94:24: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter f(*itr, db, std::cout, config); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:98:20: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter f("%m", db, std::cout, config); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestRequestGiOidLength::test_method()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:109:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter f(format_spec, db, out); ^~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestRequestSeqId::test_method()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:151:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter f(format_spec, db, out); ^~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestRequestSeqIdLong::test_method()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:195:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter f(format_spec, db, out); ^~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestRequestAccessionPIGTaxidTitle::test_method()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:228:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter f(format_spec, db, out); ^~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestRequestGiGivenPIG::test_method()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:259:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter f(format_spec, db, out); ^~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestRequestSequenceDataLength::test_method()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:284:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter f(format_spec, db, out); ^~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestMaskedFasta::test_method()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:314:25: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config; ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:319:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter f(format_spec, db, out, config); ^~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestMaskedSequenceData::test_method()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:358:25: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config; ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:361:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter f(format_spec, db, out, config); ^~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnseq.cpp:37:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnseq.cpp: In static member function ‘static bool ncbi::objects::CAlnMixSequences::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnseq.cpp:84:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_ChainScore == seq2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_Score > seq2->m_Score || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp: In constructor ‘ncbi::CWriteDB_File::CWriteDB_File(const string&, const string&, int, Uint8, bool)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:115:24: warning: unused variable ‘MAX_FILE_SIZE’ [-Wunused-variable] static const Uint8 MAX_FILE_SIZE = (1L << MAX_OFFSET_BITS) - 1L; ^~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp: In member function ‘int ncbi::CWriteDB_File::Write(const ncbi::CTempString&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:147:24: warning: unused variable ‘MAX_OFFSET’ [-Wunused-variable] static const Uint8 MAX_OFFSET = (1L << MAX_OFFSET_BITS) - 1L; ^~~~~~~~~~ r/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnvec.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnvec.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnvec.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnvecprint.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp -o seq_writer_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp -o seq_formatter_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seq_writer_unit_test.o seq_formatter_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lblastdb_format -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -ldl -lm -lpthread -o blastdb_format_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_format_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastdb_format_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/blastdb_format_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gene_info_reader LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function ‘void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function ‘void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gene_info_reader_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lgene_info -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -ldl -lm -lpthread -o gene_info_reader /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f gene_info_reader /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/gene_info_reader make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqdb_demo LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/cleanup' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /bin/rm -f libxcleanup.so .libxcleanup.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcleanup.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o newcleanupp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxobjutil -lvalid -lsubmit -ltaxon3 -lxregexp -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lpcre /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxcleanup.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxcleanup.so /bin/ln -f .xcleanup.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xcleanup.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/cleanup' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/cleanup' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/pairwise_aln.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/sparse_aln.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_demo.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -ldl -lm -lpthread -o seqdb_demo /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f seqdb_demo /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/seqdb_demo make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_services_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/services/unit_test TMPL=blast_services_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/services/blast_services.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_perf.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -ldl -lm -lpthread -o seqdb_perf /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f seqdb_perf /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/seqdb_perf make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_filter_program_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_filter_program.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/mask_info_registry.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/sparse_aln.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/sparse_ci.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/sparse_ci.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/general__.hpp:1, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alntext.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/taxid_set.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/seqmasks_io/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqmasks_io UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp -o blast_services_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_services_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lblast_services -lxnetblastcli -lxnetblast -lseqdb -lblastdb -lscoremat -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blast_services_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_services_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blast_services_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/blast_services_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services/unit_test' .6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/build_db.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/score_builder_base.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/score_builder_base.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/dbindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgoblastdbindex UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/dbindex/sequence_istream_bdb.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp:39: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ SET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /bin/rm -f libxalnmgr.so .libxalnmgr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalnmgr.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxobjutil -lxobjmgr -lseqset -lseq -lxser -ltables -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxalnmgr.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxalnmgr.so /bin/ln -f .xalnmgr.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xalnmgr.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/alnmgr' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/alnmgr' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/seqloc__.hpp:1, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/dbindex.cpp:42: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/seqmasks_io/mask_writer_int.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer_int.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ 2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/dbindex.cpp: In function ‘const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] unsigned long tmp; ^~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/nIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:59, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/criteria.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /bin/rm -f libwritedb.so .libwritedb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libwritedb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqdb -lxobjread -lxobjmgr -lblastdb -lseqset -lseq -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libwritedb.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libwritedb.so /bin/ln -f .writedb.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.writedb.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp:41: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function ‘std::__cxx11::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: ‘std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)’ is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:288:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqmasks_io.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqdb -lxobjread -lxobjutil -lxobjmgr -lblastdb -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libseqmasks_io.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libseqmasks_io.so /bin/ln -f .seqmasks_io.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.seqmasks_io.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/seqmasks_io' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/seqmasks_io' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbload_util.o /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_genbank.a /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libncbi_xloader_genbank.a /bin/rm -f libncbi_xloader_genbank.so .libncbi_xloader_genbank.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_genbank.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC gbloader.o gbload_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lxconnect -lconnect -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_genbank.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libncbi_xloader_genbank.so /bin/ln -f .ncbi_xloader_genbank-static.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xloader_genbank-static.dep /bin/ln -f .ncbi_xloader_genbank.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xloader_genbank.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xformat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/format' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format TMPL=xformat -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/accession_item.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/dbindex/sequence_istream.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/dbindex/dbindex.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/dbindex_search.cpp:47: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/basecount_item.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_blastdb_rmt.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lncbi_xloader_blastdb -lblast_services -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' cd objtools/simple/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xobjsimple UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/simple' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/simple TMPL=xobjsimple -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/simple/simple_om.hpp:35, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/simple/simple_om.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/Seq_feat_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/Seq_feat.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/comment_item.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Delta_ext_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Delta_ext.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/contig_item.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex' /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgoblastdbindex.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast -lseqdb -lxobjread -lxobjutil -lxobjmgr -lseqset -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxalgoblastdbindex.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxalgoblastdbindex.so /bin/ln -f .xalgoblastdbindex.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xalgoblastdbindex.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex' cd app/dustmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=dustmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/dustmasker' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/dustmasker TMPL=dustmasker -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/simple' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.so .libxobjsimple.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjsimple.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC simple_om.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lncbi_xloader_genbank -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxobjsimple.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxobjsimple.so /bin/ln -f .xobjsimple.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xobjsimple.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/simple' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/simple' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/dustmasker/dust_mask_app.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/dustmasker/main.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/date_item.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=writedb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/dustmasker/dust_mask_app.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/dustmasker/dust_mask_app.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Dbtag_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Dbtag.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/dbsource_item.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:59, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:43: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/dustmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/dustmasker/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie main.o dust_mask_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -ldl -lm -lpthread -o dustmasker /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f dustmasker /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/dustmasker make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/dustmasker' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/dustmasker' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/accession_item.cpp -o accession_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/comment_item.cpp -o comment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/contig_item.cpp -o contig_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/date_item.cpp -o date_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/defline_item.In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/defline_item.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/winmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgowinmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/winmask' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask TMPL=xalgowinmask -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp:45: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp: In function ‘void ncbi::objects::s_SplitCommaSeparatedStringInParens(std::vector >&, const string&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp:874:120: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( string_to_split.substr( 1, string_to_split.length() - amount_to_chop_off_end - 1), ",", output_vec ); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp: In member function ‘void ncbi::objects::CFeatureItem::x_AddQualExceptions(ncbi::objects::CBioseqContext&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp:1393:49: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split( raw_exception, ",", exceptions ); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp: In function ‘const string& ncbi::objects::s_AaName(int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp:1790:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genome_item.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp: In function ‘void ncbi::objects::s_ParseParentQual(const ncbi::objects::CGb_qual&, std::__cxx11::list >&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp:3355:37: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(val, "(,)", vals); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp: In member function ‘void ncbi::objects::CFeatureItem::x_AddRptUnitQual(const string&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp:3787:39: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(tmp, ",", units); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/ctrl_items.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_score.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_score_min.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp -o writedb_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp -o criteria_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie writedb_unit_test.o criteria_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -ldl -lm -lpthread -o writedb_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f writedb_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/writedb_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' cd objtools/align_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=align_format UNIX_PROJ="" sources= configurables=configurables.null In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqblock/PIR_block_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqblock/PIR_block.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/keywords_item.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format TMPL=align_format -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/locus_item.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_window.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/keywords_item.cpp: In member function ‘void ncbi::objects::CKeywordsItem::x_AddKeyword(const string&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/keywords_item.cpp:378:38: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split( keyword, ";", kywds ); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/keywords_item.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/align_format/align_format_util.hpp:33, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/align_format_util.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/winmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbicd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=makeindex LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Dbtag_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Dbtag.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/primary_item.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/primary_item.cpp: In member function ‘void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/primary_item.cpp:213:63: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/primary_item.cpp:214:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (this_start < (15 + last_stop) ) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:49: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/reference_item.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/reference_item.cpp: In static member function ‘static void ncbi::objects::CReferenceItem::ChangeMedlineAuthorsToISO(ncbi::CRef)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/reference_item.cpp:1300:72: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(author_name, " ", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/reference_item.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie main.o mkindex_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lseqdb -lblastdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -ldl -lm -lpthread -o makembindex /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f makembindex /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/makembindex make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex/makeindex' cpp -o defline_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp -o feature_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genome_item.cpp -o genome_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/locus_item.cpp -o locus_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/primary_item.cpp -o primary_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/reference_item.cpp -o reference_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/segment_item.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/sequence_item.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqblock/GB_block_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqblock/GB_block.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/source_item.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/source_item.cpp: In member function ‘void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/source_item.cpp:257:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( genome >= s_organelle_prefix_size ) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/showdefline.cpp:39: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/version_item.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/wgs_item.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/tsa_item.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Int_fuzz_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Int_fuzz.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_seqloc.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -blast+-2.6.0/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blasenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/segment_item.cpp -o segment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/source_item.cpp -o source_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/version_item.cpp -o version_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Dbtag_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Dbtag.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/qualifiers.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/align_format/align_format_util.hpp:33, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/showalign.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/context.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/showalign.cpp: In function ‘void ncbi::align_format::s_MakeDomainString(int, int, const string&, std::__cxx11::string&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/showalign.cpp:4433:49: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/showalign.cpp:4433:81: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gather_items.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gather_items.cpp: In member function ‘void ncbi::objects::CFlatGatherer::x_IdComments(ncbi::objects::CBioseqContext&, ncbi::objects::CFlatGatherer::EGenomeAnnotComment) const’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gather_items.cpp:1018:34: warning: unused variable ‘format’ [-Wunused-variable] CCommentItem::ECommentFormat format = ctx.Config().DoHTML() ? ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/items/item.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/item_ostream.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/embl_gather.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ t+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/bu/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gather_items.cpp: At global scope: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gather_items.cpp:748:13: warning: ‘bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)’ defined but not used [-Wunused-function] static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) ^~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Object_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/Object_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_gather.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp: In constructor ‘ncbi::CSeqMaskerIstatOAscii::CSeqMaskerIstatOAscii(const string&, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:113:49: warning: ‘unit_size’ may be used uninitialized in this function [-Wmaybe-uninitialized] if( k == 0U || k > (Uint4)(2*unit_size - 1) ) ~^~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_generator.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/tabular.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_cache_boost.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_generator.cpp: In member function ‘void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_generator.cpp:185:10: warning: unused variable ‘nearFeatsSuppress’ [-Wunused-variable] bool nearFeatsSuppress = false; ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_generator.cpp:188:10: warning: variable ‘isNgNtNwNz’ set but not used [-Wunused-but-set-variable] bool isNgNtNwNz = false; ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_generator.cpp:189:10: warning: variable ‘isGED’ set but not used [-Wunused-but-set-variable] bool isGED = false; ^~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_generator.cpp:190:10: warning: variable ‘isTPA’ set but not used [-Wunused-but-set-variable] bool isTPA = false; ^~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/win_mask_counts_converter.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_counts_converter.cpp:42: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/biblio/Cit_book_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/biblio/Cit_book.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/item_formatter.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ ild/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_dup_table.cpp:40: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/context.cpp -o context.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gather_items.cpp -o gather_items.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/align_format/vectorscreen.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/vectorscreen.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/embl_formatter.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_util.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/win_mask_config.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_config.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/tempstr.hpp:38:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CGapItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::COriginItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CContigItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CPrimaryItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CTSAItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CWGSItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CDBSourceItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSequenceItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CBaseCountItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CFeatureItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSourceFeatureItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CFeatHeaderItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CCommentItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CReferenceItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSourceItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSegmentItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CKeywordsItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CHtmlAnchorItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CGenomeProjectItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CVersionItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CAccessionItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CDeflineItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CLocusItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CEndSectionItem]’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/showalign.cpp -o showalign.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/tabular.cpp -o tabular.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_util.cpp: In member function ‘virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: ‘std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)’ is deprecated [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_util.cpp:37:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:288:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/align_format/seqalignfilter.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/seqalignfilter.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_config.cpp: In static member function ‘static void ncbi::CWinMaskConfig::AddWinMaskArgs(ncbi::CArgDescriptions&, ncbi::CWinMaskConfig::EAppType, bool)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_config.cpp:181:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if(type == eAny || type >= eGenerateMasksWithDuster) ^~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_config.cpp:185:9: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ arg_desc.AddDefaultKey( "dust_level", "dust_level", ^~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/items/item.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/item_ostream.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/format_item_ostream.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/format_item_ostream.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat.cpp:32: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/taxFormat.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/item_ostream.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/ostream_text_ostream.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/ostream_text_ostream.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/aln_printer.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.so .libxalgowinmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgowinmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqmasks_io -lxobjread -lxobjutil -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxalgowinmask.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxalgowinmask.so /bin/ln -f .xalgowinmask.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xalgowinmask.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/winmask' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/winmask' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/origin_item.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/items/item.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/item_ostream.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/ftable_gather.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ FSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/origin_item.cpp -o origin_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdatcd algo/blast/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xblast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api TMPL=xblast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/ftable_formatter.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd app/winmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=winmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_aux.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/winmasker TMPL=winmasker -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/winmasker/win_mask_app.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.so .libalign_format.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libalign_format.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxalnmgr -lncbi_xloader_genbank -lseqdb -lblast_services -lxobjread -lxobjutil -lxobjmgr -lxnetblast -lblastdb -lgene_info -ltaxon1 -lseqset -lseq -lgeneral -lxser -lxcgi -lxhtml -ltables -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libalign_format.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libalign_format.so /bin/ln -f .align_format.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.align_format.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gbseq_formatter.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/winmasker/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -ldl -lm -lpthread -o windowmasker /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f windowmasker /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/windowmasker make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gbseq_formatter.cpp: In function ‘void ncbi::objects::s_GBSeqStringCleanup(std::__cxx11::string&, bool)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gbseq_formatter.cpp:82:36: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, " \n\r\t\b", l); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gbseq_formatter.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gbseq_formatter.cpp: In member function ‘virtual void ncbi::objects::CGBSeqFormatter::FormatGenomeProject(const ncbi::objects::CGenomeProjectItem&, ncbi::objects::IFlatTextOStream&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gbseq_formatter.cpp:358:37: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(second, ",", ids); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gbseq_formatter.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_cxx.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gbseq_formatter.cpp: In member function ‘void ncbi::objects::CGBSeqFormatter::x_StrOStreamToTextOStream(ncbi::objects::IFlatTextOStream&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gbseq_formatter.cpp:685:70: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split((string)CNcbiOstrstreamToString(m_StrStream), "\n", l); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gbseq_formatter.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/items/item_base.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/items/accession_item.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_config.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_local_priv.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_local_priv.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_local_priv.cpp: In member function ‘bool ncbi::blast::CBlastOptionsLocal::Validate() const’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_local_priv.cpp:379:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_local_priv.cpp:388:9: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return true; ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_config.cpp: In function ‘ncbi::objects::CFlatFileConfig::TGenbankBlocks ncbi::objects::{anonymous}::x_GetGenbankBlocks(const ncbi::CArgs&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_config.cpp:841:52: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(blocks_arg, ",", vecOfBlockNames); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/flat_file_config.hpp:34, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_config.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ cd objtools/align_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=align_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test TMPL=align_format_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/alignment_item.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/remote_blast.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_builder.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_setup_cxx.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/items/item_base.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/items/gap_item.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gap_item.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genome_project_item.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_seqalign.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_seqalign.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:39: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/cigar_formatter.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/sam_formatter.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/buiIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_handle.cpp: In member function ‘char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_handle.cpp:99:36: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_handle.cpp: In member function ‘void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_handle.cpp:105:37: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ e-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gap_item.cpp -o gap_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:43: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:43: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/cigar_formatter.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_nucl_options.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/disc_nucl_options.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/disc_nucl_options.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Bioseq_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqset/Bioseq_set.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_set_handle.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_entry_ci.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/gather_iter.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gather_iter.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/psiblast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psiblast_options.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_prot_options.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/items/item_base.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/items/html_anchor_item.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/html_anchor_item.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_rps_options.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blastx_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blastx_options.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp -o showdefline_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp -o showalign_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/blast_test_util.cpp -o blast_test_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp -o vectorscreen_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp -o tabularinof_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp -o aln_printer_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie showdefline_unit_test.o showalign_unit_test.o blast_test_util.o vectorscreen_unit_test.o tabularinof_unit_test.o aln_printer_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lxcgi -lxhtml -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -ldl -lm -lpthread -o align_format_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f align_format_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f align_format_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/align_format_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format/unit_test' ld/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/tblastx_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/tblastx_options.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/tblastn_options.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/tblastn_options.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/rpstblastn_options.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/rpstblastn_options.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/items/gene_finder.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gene_finder.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/pssm_engine.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ E_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/local_blast.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/OrgMod_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/OrgMod.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/items/flat_qual_slots.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_qual_slots.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/remote_blast.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ READ_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.so .libxformat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxformat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxcleanup -lvalid -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lsubmit -lxalnmgr -lxobjutil -ltaxon3 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxformat.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxformat.so /bin/ln -f .xformat.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xformat.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/format' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/format' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ 0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o /usr/bin/g++ -std=gnu++11 -c -WalIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/bl2seq.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/psibl2seq.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psibl2seq.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ l -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/pIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/local_db_adapter.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/local_db_adapter.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/psiblast.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psiblast.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psiblast_impl.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psiblast_impl.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psiblast_iteration.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/msa_pssm_input.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/msa_pssm_input.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/psi_pssm_input.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psi_pssm_input.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_aux_priv.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_aux_priv.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function ‘void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/msa_pssm_input.cpp:376:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (k < m_Msa->dimensions->query_length && ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psiblast_aux_priv.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ siblast.cpp -o psiblast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_advprot_options.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/dust_filter.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/dust_filter.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/search_strategy.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/rps_aux.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/setup_factory.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ 0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/version.cpp -o version.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/prelim_stage.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/traceback_stage.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/traceback_stage.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/uniform_search.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/scoremat/Pssm_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/scoremat/Pssm.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/local_search.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_results.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/query_data.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_diag.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/seqalign__.hpp:1, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/remote_search.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/objmgr_query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/objmgr_query_data.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/local_search.cpp -o local_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/query_data.cpp -o query_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/objmgrfree_query_data.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_dbindex.cpp:43: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ T -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=formaIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/split_query.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/split_query_cxx.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/split_query.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/split_query_aux_priv.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/split_query_blk.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/winmask_filter.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/winmask_filter.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/subj_ranges_set.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/subj_ranges_set.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/rpsblast_local.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/seedtop.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seedtop.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seedtop.cpp: In member function ‘void ncbi::blast::CSeedTop::x_ParsePattern()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seedtop.cpp:66:56: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(NStr::ToUpper(m_Pattern), "-", units); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/seedtop.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seedtop.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/cdd_pssm_input.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/psiblast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/deltablast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/deltablast_options.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ t-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/psiblast.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/deltablast.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/magicblast_options.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/magicblast_options.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/magicblast.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o /bin/rm -f libxblast.so .libxblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxalgoblastdbindex -lcomposition_adjustment -lxalgowinmask -lxalgodustmask -lseqmasks_io -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lblastdb -lxnetblastcli -lxnetblast -lscoremat -lxconnect -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lblast -lseqdb -lseqset -lseq -lgeneral -lxser -lxconnect -lsequtil -ltables -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxblast.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxblast.so /bin/ln -f .xblast.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xblast.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/api' cd algo/blast/blastinput/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastinput UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xblastformat UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/igblast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=igblast UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=aalookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/igblast' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/format' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/igblast TMPL=igblast -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=aalookup_unit_test -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format TMPL=xblastformat -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput TMPL=blastinput -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_input.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/igblast/igblast.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/igblast/igblast.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/format/blastfmtutil.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastfmtutil.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/igblast/igblast.cpp: In constructor ‘ncbi::blast::CIgAnnotationInfo::CIgAnnotationInfo(ncbi::CConstRef&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/igblast/igblast.cpp:92:65: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*l, " \t\n\r", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/igblast/igblast.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/igblast/igblast.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/igblast/igblast.cpp:116:65: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*l, " \t\n\r", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/igblast/igblast.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/igblast/igblast.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/igblast/igblast.cpp: In member function ‘void ncbi::blast::CIgBlast::x_ScreenByAlignLength(ncbi::CRef&, int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/igblast/igblast.cpp:138:73: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if((*it)->GetAlignLength() - (*it)->GetTotalGapCount(0) < length){ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp -o aalookup_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie aalookup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o aalookup_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f aalookup_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f aalookup_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/aalookup_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastxml_format.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/igblast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.so .libigblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libigblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC igblast.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libigblast.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libigblast.so /bin/ln -f .igblast.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.igblast.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/igblast' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/igblast' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=aascan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=aascan_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_scope_src.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastxml_format.cpp: In function ‘void ncbi::s_SeqAlignSetToXMLHits(std::__cxx11::list >&, const ncbi::objects::CSeq_align_set&, ncbi::objects::CScope*, const ncbi::CBlastFormattingMatrix*, const ncbi::TMaskedQueryRegions*, bool, int, int, ncbi::CNcbiOstream*)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastxml_format.cpp:501:86: warning: ‘ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)’ is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/tempstr.hpp:39:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/object_manager.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastxml_format.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbimisc.hpp:1216:38: note: in definition of macro ‘NCBI_DEPRECATED_CTOR’ # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastxml_format.cpp: In function ‘bool ncbi::s_SerializeAndSplitBy(const ncbi::CSerialObject&, const char*, std::__cxx11::string&, std::__cxx11::string&, bool, bool)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastxml_format.cpp:785:89: warning: ‘ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)’ is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/tempstr.hpp:39:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/object_manager.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastxml_format.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbimisc.hpp:1216:38: note: in definition of macro ‘NCBI_DEPRECATED_CTOR’ # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdiag_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=blastdiag_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastxml2_format.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp -o blastdiag_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdiag_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastdiag_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdiag_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastdiag_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/blastdiag_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastengine_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=blastengine_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_args.cpp:40: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie aascan_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o aascan_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f aascan_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f aascan_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/aascan_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/format/blast_format.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blast_format.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function ‘void blastengine::testBlastpPrelimSearch::test_method()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:441:33: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] options->SetFilterString("L"); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:53: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastextend_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=blastextend_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blast_format.cpp:49:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/format/data4xmlformat.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/format/blast_format.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blast_format.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blast_format.cpp:51:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/format/data4xml2format.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/format/blast_format.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blast_format.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blast_format.cpp: In member function ‘void ncbi::CBlastFormat::x_SplitSeqAlign(ncbi::CConstRef, ncbi::objects::CSeq_align_set&, ncbi::objects::CSeq_align_set&, ncbi::blast::CPsiBlastIterationState::TSeqIds&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blast_format.cpp:520:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(count >= m_NumSummary) ~~~~~~^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp -o blastengine_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastengine_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastengine_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastengine_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastengine_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/blastengine_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/data4xmlformat.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/data4xmlformat.cpp:37:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/format/data4xmlformat.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/format/data4xmlformat.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/data4xmlformat.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp -o blastextend_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastextend_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastextend_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastextend_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastextend_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/blastextend_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastfilter_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/data4xml2format.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=blastfilter_unit_test -w -j --jobserver-fds=3,4 all cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=blasthits_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/data4xml2format.cpp:36:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/format/data4xml2format.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/format/data4xml2format.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/data4xml2format.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/simple/simple_om.hpp:35, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Imake[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRAIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blastp_args.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/build_archive.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp -o blasthits_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blasthits_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blasthits_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blasthits_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blasthits_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/blasthits_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blastn_args.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/format/blast_format.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/vecscreen_run.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/format/sam_formatter.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/format/sam.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/sam.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastoptions_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=blastoptions_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp -o blastfilter_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastfilter_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastfilter_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastfilter_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastfilter_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/blastfilter_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastsetup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=blastsetup_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ NT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/format/sam.cpp -o sam.o /bin/rm -f libxblastformat.so .libxblastformat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxblastformat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxformat -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lalign_format -lblastxml -lblastxml2 -lxhtml -lxcgi -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxblastformat.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libxblastformat.so /bin/ln -f .xblastformat.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.xblastformat.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/format' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/format' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blastx_args.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35:0: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::RemoteOptionsTest::test_method()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:71:60: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] BOOST_CHECK_NO_THROW(opts.SetFilterString("m L", false)); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/test_boost.hpp:145:9: note: in definition of macro ‘BOOST_CHECK_NO_THROW_IMPL’ S; \ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testRemoteFilterString::test_method()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1327:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1331:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:39: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1336:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1338:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1342:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1344:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1348:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1350:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1354:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1356:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ In file included from /usr/include/boost/test/test_tools.hpp:45:0, from /usr/include/boost/test/unit_test.hpp:18, from /usr/include/boost/test/auto_unit_test.hpp:16, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/test_boost.hpp:66, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testOptionsDeepCopy::test_method()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1395:57: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] BOOST_CHECK_EQUAL(string(optsClone->GetFilterString()), string("L;m;")); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gapinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=gapinfo_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp -o gapinfo_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gapinfo_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxncbi -ldl -lm -lpthread -o gapinfo_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gapinfo_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f gapinfo_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/gapinfo_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gencode_singleton_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=gencode_singleton_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastoptions_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastoptions_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastoptions_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastoptions_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/blastoptions_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=hspfilter_besthit_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_besthit_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp -o hspfilter_besthit_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspfilter_besthit_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o hspfilter_besthit_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_besthit_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f hspfilter_besthit_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/hspfilter_besthit_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=hspfilter_culling_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_culling_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gencode_singleton_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o gencode_singleton_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gencode_singleton_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f gencode_singleton_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/gencode_singleton_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=hspstream_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=hspstream_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp -o blastsetup_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastsetup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastsetup_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastsetup_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastsetup_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/blastsetup_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=linkhsp_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=linkhsp_unit_test -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITSIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:42: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp -o hspfilter_culling_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspfilter_culling_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o hspfilter_culling_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_culling_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f hspfilter_culling_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/hspfilter_culling_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=msa2pssm_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=msa2pssm_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspstream_unit_test.o hspstream_test_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o hspstream_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspstream_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f hspstream_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/hspstream_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=ntlookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=ntlookup_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie linkhsp_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o linkhsp_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f linkhsp_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f linkhsp_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/linkhsp_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=ntscan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=ntscan_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp -o msa2pssm_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie msa2pssm_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o msa2pssm_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f msa2pssm_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f msa2pssm_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/msa2pssm_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=optionshandle_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=optionshandle_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp -o ntlookup_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie ntlookup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o ntlookup_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntlookup_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f ntlookup_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/ntlookup_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=phiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=phiblast_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp -o ntscan_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie ntscan_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o ntscan_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntscan_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f ntscan_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/ntscan_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=prelimsearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=prelimsearch_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp -o optionshandle_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie optionshandle_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o optionshandle_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f optionshandle_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f optionshandle_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/optionshandle_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psibl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=psibl2seq_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp -o phiblast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie phiblast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o phiblast_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f phiblast_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f phiblast_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/phiblast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psiblast_iteration_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=psiblast_iteration_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp -o prelimsearch_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie prelimsearch_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o prelimsearch_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f prelimsearch_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f prelimsearch_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/prelimsearch_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=pssmcreate_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=pssmcreate_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp -o psibl2seq_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psibl2seq_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o psibl2seq_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psibl2seq_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f psibl2seq_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/psibl2seq_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp -o psiblast_iteration_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_iteration_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o psiblast_iteration_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_iteration_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f psiblast_iteration_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/psiblast_iteration_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:40: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:39: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=pssmenginefreqratios_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=pssmenginefreqratios_unit_test -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/kblastp_args.cpp: In constructor ‘ncbi::blast::CKBlastpAppArgs::CKBlastpAppArgs()’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/kblastp_args.cpp:50:16: warning: unused variable ‘kFilterByDefault’ [-Wunused-variable] bool const kFilterByDefault = false; ^~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ =64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-proteIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=querydata_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=querydata_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp -o pssmcreate_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp -o pssm_test_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp -o pssmcreate_cdd_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie pssmcreate_unit_test.o pssm_test_util.o pssmcreate_cdd_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o pssmcreate_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmcreate_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f pssmcreate_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/pssmcreate_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=queryinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=queryinfo_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie pssmenginefreqratios_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o pssmenginefreqratios_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmenginefreqratios_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f pssmenginefreqratios_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/pssmenginefreqratios_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=remote_blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=remote_blast_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ ctor-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o /bin/rm -f libblastinput.so .libblastinput.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastinput.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxblast -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lseqdb -lxobjread -lxobjread -lvariation -lcreaders -lsubmit -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxutil -lncbi_xloader_genbank -lncbi_xreader_id2 -lncbi_xreader -lscoremat -lseqset -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libblastinput.so /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib/libblastinput.so /bin/ln -f .blastinput.dep /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/status/.blastinput.dep make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=rps_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=rps_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/services/blast_services.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Std_seg_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Std_seg.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie querydata_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o querydata_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f querydata_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f querydata_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/querydata_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=scoreblk_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie queryinfo_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o queryinfo_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f queryinfo_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f queryinfo_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/queryinfo_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=search_strategy_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=scoreblk_unit_test -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=search_strategy_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/remote_blast.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/search_strategy.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp -o rps_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rps_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o rps_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f rps_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f rps_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/rps_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqinfosrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=seqinfosrc_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/seqinfosrc_seqvec.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp -o scoreblk_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie scoreblk_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o scoreblk_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f scoreblk_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f scoreblk_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/scoreblk_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqsrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=seqsrc_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp -o remote_blast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie remote_blast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o remote_blast_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f remote_blast_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f remote_blast_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/remote_blast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=setupfactory_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=setupfactory_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp -o seqinfosrc_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqinfosrc_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o seqinfosrc_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqinfosrc_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f seqinfosrc_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/seqinfosrc_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie search_strategy_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o search_strategy_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f search_strategy_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f search_strategy_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/search_strategy_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:39: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp -o setupfactory_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie setupfactory_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o setupfactory_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f setupfactory_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f setupfactory_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/setupfactory_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=split_query_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=split_query_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=stat_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=stat_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=subj_ranges_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=subj_ranges_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/subj_ranges_set.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp -o stat_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie stat_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o stat_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f stat_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f stat_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/stat_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=traceback_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp -o mockseqsrc2_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqsrc_unit_test.o seqsrc_mock.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o seqsrc_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqsrc_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f seqsrc_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/seqsrc_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=tracebacksearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=tracebacksearch_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp -o subj_ranges_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie subj_ranges_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o subj_ranges_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f subj_ranges_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f subj_ranges_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/subj_ranges_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=uniform_search_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=uniform_search_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/traceback_stage.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp -o split_query_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie split_query_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o split_query_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f split_query_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f split_query_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/split_query_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=version_reference_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=version_reference_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp -o traceback_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie traceback_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o traceback_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f traceback_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f traceback_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/traceback_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blast_format TMPL=blast_format_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp -o tracebacksearch_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tracebacksearch_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o tracebacksearch_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f tracebacksearch_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f tracebacksearch_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/tracebacksearch_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:40: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp -o uniform_search_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie uniform_search_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o uniform_search_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f uniform_search_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f uniform_search_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/uniform_search_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=bdbloader_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blastdb TMPL=bdbloader_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp -o version_reference_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie version_reference_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o version_reference_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f version_reference_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f version_reference_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/version_reference_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_formatter LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=blast_formatter -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/blast_formatter.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:40: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=blastn -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/blastn_app.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I../ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp -o bdbloader_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie bdbloader_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o bdbloader_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f bdbloader_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f bdbloader_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/bdbloader_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=blastp -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:40: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o blast_formatter /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blast_formatter /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/blast_formatter make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=blastx -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/blastp_app.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/blastx_app.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/blastn_app.cpp -o blastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_app_util -lxformat -lxcleanup -lvalid -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lsubmit -lxregexp -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o blastn /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/blastn make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=deltablast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=deltablast -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqalignfilter_unit_test.o blastfmtutil_unit_test.o build_archive_unit_test.o vecscreen_run_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -ldl -lm -lpthread -o blast_format_unit_tesIn file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/deltablast.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/deltablast_app.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ t /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_format_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blast_format_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/blast_format_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psiblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=psiblast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/psiblast_app.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastp_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o blastp /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastp /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/blastp make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=rpsblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=rpsblast -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o blastx /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastx /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/blastx make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=rpstblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=rpstblastn -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/rpsblast_app.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/rpstblastn_app.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie deltablast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o deltablast /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f deltablast /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/deltablast make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seedtop LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=seedtop -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o psiblast /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f psiblast /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/psiblast make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=tblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=tblastn -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/seedtop.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/seedtop_app.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rpsblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o rpsblast /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f rpsblast /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/rpsblast make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=tblastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=tblastx -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rpstblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o rpstblastn /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f rpstblastn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/rpstblastn make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdb_aliastool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/tblastn_app.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/tblastx_app.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdb_aliastool.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seedtop_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o seedtop /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f seedtop /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/seedtop make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdbcheck LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb TMPL=blastdbcheck -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdb_aliastool.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o blastdb_aliastool /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastdb_aliastool /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/blastdb_aliastool make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdbcmd LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb TMPL=blastdbcmd -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tblastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o tblastx /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f tblastx /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/tblastx make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdbcp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb TMPL=blastdbcp -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o tblastn /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f tblastn /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/tblastn make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=convert2blastmask LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb TMPL=convert2blastmask -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcmd.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcheck.cpp:39: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/build_db.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcp.cpp:33: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/convert2blastmask.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcheck.cpp: In member function ‘int CAliasTest::DoTest(const string&, TSeen&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcheck.cpp:720:72: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*line, " \t\n\r", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcheck.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcheck.cpp: In member function ‘virtual bool CDbTest::Test(CTestActionList&)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcheck.cpp:941:54: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(m_Db, " ", dbs, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcheck.cpp:34: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o blastdbcp /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastdbcp /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/blastdbcp make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=makeblastdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb TMPL=makeblastdb -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/makeblastdb.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie convert2blastmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o convert2blastmask /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f convert2blastmask /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/convert2blastmask make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcheck.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o blastdbcheck /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastdbcheck /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/blastdbcheck make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=makeprofiledb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb TMPL=makeprofiledb -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/build_db.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/masked_range_set.hpp:33, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/masked_range_set.cpp:31: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcmd.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o blastdbcmd /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastdbcmd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/blastdbcmd make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' cd app/segmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=segmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/segmasker' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/segmasker TMPL=segmasker -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistrasn.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/makeprofiledb.cpp:40: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/segmasker/segmasker.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/segmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie segmasker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lxobjsimple -lxalgosegmask -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -ldl -lm -lpthread -o segmasker /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f segmasker /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/segmasker make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/segmasker' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/segmasker' cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastinput_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=bl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput/unit_test' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=bl2seq_unit_test -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/unit_test TMPL=blastinput_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie makeblastdb.o masked_range_set.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o makeblastdb /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f makeblastdb /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/makeblastdb make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie makeprofiledb.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o makeprofiledb /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f makeprofiledb /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/makeprofiledb make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_scope_src.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:37: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp -o blast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blast_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blast_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/blast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=delta_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=delta_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=magicblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=magicblast_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:36: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp -o delta_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie delta_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o delta_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f delta_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f delta_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/delta_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=psiblast_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp -o magicblast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie magicblast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -lm -lpthread -o magicblast_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f magicblast_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f magicblast_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/magicblast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=redoalignment_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=redoalignment_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:38: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp -o bl2seq_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie bl2seq_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o bl2seq_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f bl2seq_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f bl2seq_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/bl2seq_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp -o psiblast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o psiblast_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f psiblast_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/psiblast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp -o redoalignment_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie redoalignment_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o redoalignment_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f redoalignment_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f redoalignment_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/redoalignment_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp -o blastinput_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp -o blast_scope_src_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastinput_unit_test.o blast_scope_src_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lentrez2cli -lentrez2 -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastinput_unit_test /bin/bash /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastinput_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastinput_unit_test /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/bin/blastinput_unit_test make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput/unit_test' make[3]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build' make[2]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build' make[1]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0' echo "Save time and do nothing for architecture independent builds" Save time and do nothing for architecture independent builds make[1]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0' debian/rules override_dh_auto_test make[1]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0' dh_auto_test /usr/bin/make -j1 check VERBOSE=1 make[2]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++' if test -s ""; then \ cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build && /usr/bin/make -w check_p RUN_CHECK=Y; \ else \ cd /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build && /usr/bin/make -w check_r RUN_CHECK=Y; \ fi make[3]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build' ====================================================================== make[4]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build' /usr/bin/make -C corelib -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /usr/bin/make -C util -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util' /usr/bin/make -C regexp -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/regexp TMPL=regexp -w mark-as-disabled make[8]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' make[8]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' /usr/bin/make -C xregexp -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' /usr/bin/make -C compress -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress' /usr/bin/make -C bzip2 -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/bzip2' NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 make[8]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/bzip2' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/bzip2 TMPL=bzip2 -w mark-as-disabled make[9]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/bzip2' make[9]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/bzip2' make[8]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/bzip2' make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/bzip2' /usr/bin/make -C zlib -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/zlib' NOTE: Skipping project zlib due to unmet requirements: LocalZ make[8]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/zlib' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/util/compress/zlib TMPL=zlib -w mark-as-disabled make[9]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/zlib' make[9]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/zlib' make[8]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/zlib' make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/zlib' /usr/bin/make -C api -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/api' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/api' make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress' /bin/echo 'Warning: non-existent sub-project "diff"' Warning: non-existent sub-project "diff" /bin/echo 'Warning: non-existent sub-project "image"' Warning: non-existent sub-project "image" /usr/bin/make -C tables -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/tables' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/tables' /usr/bin/make -C creaders -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/creaders' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/creaders' /usr/bin/make -C sequtil -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/sequtil' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/sequtil' /usr/bin/make -C bitset -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/bitset' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util/bitset' /bin/echo 'Warning: non-existent sub-project "qparse"' Warning: non-existent sub-project "qparse" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/util' /usr/bin/make -C connect -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/connect' /usr/bin/make -C services -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/connect/services' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/connect/services' /bin/echo 'Warning: non-existent sub-project "ext"' Warning: non-existent sub-project "ext" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "daemons"' Warning: non-existent sub-project "daemons" make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/connect' /usr/bin/make -C cgi -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/cgi' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/cgi' /usr/bin/make -C html -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/html' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/html' /usr/bin/make -C build-system -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/build-system' /usr/bin/make -C helpers -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/helpers' SKIP -- build-system/helpers/run_with_lock make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/helpers' /usr/bin/make -C project_tree_builder -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder' SKIP -- build-system/project_tree_builder/project_tree_builder /usr/bin/make -C msbuild -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' NOTE: Skipping project msbuild due to unmet requirements: MSWin make[8]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w mark-as-disabled make[9]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[9]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[8]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/build-system' /usr/bin/make -C serial -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/serial' /usr/bin/make -C datatool -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/serial/datatool' TEST -- serial/datatool/datatool make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/serial/datatool' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "soap"' Warning: non-existent sub-project "soap" make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/serial' /bin/echo 'Warning: non-existent sub-project "db"' Warning: non-existent sub-project "db" /bin/echo 'Warning: non-existent sub-project "dbapi"' Warning: non-existent sub-project "dbapi" /usr/bin/make -C objects -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects' /usr/bin/make -C general -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/general' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/general' /usr/bin/make -C biblio -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/biblio' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/biblio' /usr/bin/make -C medline -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medline' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medline' /usr/bin/make -C pub -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pub' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pub' /usr/bin/make -C seqcode -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqcode' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqcode' /usr/bin/make -C seq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' /usr/bin/make -C seqset -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqset' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqset' /usr/bin/make -C submit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/submit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/submit' /usr/bin/make -C seqedit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqedit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqedit' /usr/bin/make -C seqsplit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqsplit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqsplit' /usr/bin/make -C id1 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id1' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id1' /usr/bin/make -C id2 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id2' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id2' /usr/bin/make -C entrez2 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' /usr/bin/make -C pubmed -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pubmed' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pubmed' /usr/bin/make -C medlars -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medlars' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medlars' /usr/bin/make -C mla -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' /usr/bin/make -C proj -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/proj' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/proj' /usr/bin/make -C scoremat -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/scoremat' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/scoremat' /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastdb' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastdb' /usr/bin/make -C blastxml -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml' /usr/bin/make -C blastxml2 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml2' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml2' /usr/bin/make -C mmdb -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mmdb' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mmdb' /usr/bin/make -C cn3d -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/cn3d' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/cn3d' /usr/bin/make -C cdd -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/cdd' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/cdd' /usr/bin/make -C ncbimime -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/ncbimime' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/ncbimime' /usr/bin/make -C pcsubstance -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pcsubstance' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pcsubstance' /usr/bin/make -C pcassay -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pcassay' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pcassay' /usr/bin/make -C gbseq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/gbseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/gbseq' /usr/bin/make -C insdseq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/insdseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/insdseq' /usr/bin/make -C tinyseq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/tinyseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/tinyseq' /usr/bin/make -C biotree -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/biotree' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/biotree' /usr/bin/make -C entrezgene -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrezgene' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrezgene' /usr/bin/make -C omssa -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/omssa' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/omssa' /usr/bin/make -C remap -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/remap' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/remap' /usr/bin/make -C seqtest -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqtest' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqtest' /usr/bin/make -C taxon1 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon1' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon1' /usr/bin/make -C taxon3 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon3' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon3' /usr/bin/make -C gbproj -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/gbproj' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/gbproj' /usr/bin/make -C trackmgr -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/trackmgr' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/trackmgr' /usr/bin/make -C valerr -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/valerr' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/valerr' /usr/bin/make -C valid -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/valid' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/valid' /usr/bin/make -C access -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/access' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/access' /usr/bin/make -C docsum -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/docsum' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/docsum' /usr/bin/make -C featdef -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/featdef' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/featdef' /usr/bin/make -C genomecoll -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/genomecoll' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/genomecoll' /usr/bin/make -C homologene -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/homologene' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/homologene' /usr/bin/make -C mim -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mim' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mim' /usr/bin/make -C objprt -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/objprt' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/objprt' /usr/bin/make -C variation -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/variation' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/variation' /usr/bin/make -C macro -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/macro' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/macro' /usr/bin/make -C genesbyloc -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/genesbyloc' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/genesbyloc' /usr/bin/make -C coords -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/coords' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/coords' /usr/bin/make -C varrep -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/varrep' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects/varrep' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objects' /usr/bin/make -C objmgr -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /usr/bin/make -C util -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/util' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/util' /usr/bin/make -C split -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/split' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/split' make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr' /usr/bin/make -C objtools -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools' /bin/echo 'Warning: non-existent sub-project "unit_test_util"' Warning: non-existent sub-project "unit_test_util" /usr/bin/make -C readers -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/readers' /bin/echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/readers' /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast' /usr/bin/make -C seqdb_reader -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -C demo -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' SKIP -- objtools/blast/seqdb_reader/demo/seqdb_demo make[8]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/make -C test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' TEST -- objtools/blast/seqdb_reader/test/seqdb_perf make[8]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -C seqdb_writer -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' TEST -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test make[8]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -C gene_info_reader -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make -C demo -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' SKIP -- objtools/blast/gene_info_reader/demo/gene_info_reader make[8]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' TEST -- objtools/blast/gene_info_reader/unit_test/gene_info_unit_test make[8]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader' /bin/echo 'Warning: non-existent sub-project "gene_info_writer"' Warning: non-existent sub-project "gene_info_writer" /usr/bin/make -C services -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services/unit_test' SKIP -- objtools/blast/services/unit_test/blast_services_unit_test make[8]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services' /usr/bin/make -C blastdb_format -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' TEST -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test make[8]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format' make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast' /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" /usr/bin/make -C data_loaders -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders' /usr/bin/make -C genbank -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -C cache -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' /bin/echo 'Warning: non-existent sub-project "pubseq"' Warning: non-existent sub-project "pubseq" /usr/bin/make -C id2 -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make -C id1 -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' /bin/echo 'Warning: non-existent sub-project "pubseq2"' Warning: non-existent sub-project "pubseq2" /usr/bin/make -C gicache -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache' NOTE: Skipping project gicache due to unmet requirements: LMDB make[9]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache' /usr/bin/make -f /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w mark-as-disabled make[10]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache' make[10]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache' make[9]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache' make[8]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" /usr/bin/make -C blastdb -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' /bin/echo 'Warning: non-existent sub-project "patcher"' Warning: non-existent sub-project "patcher" /bin/echo 'Warning: non-existent sub-project "asn_cache"' Warning: non-existent sub-project "asn_cache" make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders' /usr/bin/make -C simple -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/simple' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/simple' /usr/bin/make -C alnmgr -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/alnmgr' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/alnmgr' /bin/echo 'Warning: non-existent sub-project "cddalignview"' Warning: non-existent sub-project "cddalignview" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "manip"' Warning: non-existent sub-project "manip" /usr/bin/make -C cleanup -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/cleanup' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/cleanup' /usr/bin/make -C format -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/format' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/format' /usr/bin/make -C edit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/edit' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/edit' /bin/echo 'Warning: non-existent sub-project "validator"' Warning: non-existent sub-project "validator" /bin/echo 'Warning: non-existent sub-project "asniotest"' Warning: non-existent sub-project "asniotest" /bin/echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" /usr/bin/make -C seqmasks_io -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/seqmasks_io' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/seqmasks_io' /bin/echo 'Warning: non-existent sub-project "eutils"' Warning: non-existent sub-project "eutils" /usr/bin/make -C align_format -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format/unit_test' TEST -- objtools/align_format/unit_test/align_format_unit_test make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format/unit_test' make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format' /bin/echo 'Warning: non-existent sub-project "snputil"' Warning: non-existent sub-project "snputil" /bin/echo 'Warning: non-existent sub-project "uudutil"' Warning: non-existent sub-project "uudutil" /bin/echo 'Warning: non-existent sub-project "variation"' Warning: non-existent sub-project "variation" /bin/echo 'Warning: non-existent sub-project "writers"' Warning: non-existent sub-project "writers" make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/objtools' /bin/echo 'Warning: non-existent sub-project "ctools"' Warning: non-existent sub-project "ctools" /bin/echo 'Warning: non-existent sub-project "sra"' Warning: non-existent sub-project "sra" /usr/bin/make -C algo -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo' /usr/bin/make -C dustmask -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/dustmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/dustmask' /usr/bin/make -C winmask -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/winmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/winmask' /bin/echo 'Warning: non-existent sub-project "sequence"' Warning: non-existent sub-project "sequence" /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast' /usr/bin/make -C composition_adjustment -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/composition_adjustment' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make -C core -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/core' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/core' /usr/bin/make -C dbindex -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make -C makeindex -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex/makeindex' SKIP -- algo/blast/dbindex/makeindex/makeindex make[8]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex/makeindex' make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex' /bin/echo 'Warning: non-existent sub-project "dbindex_search"' Warning: non-existent sub-project "dbindex_search" /usr/bin/make -C api -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/api' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/api' /usr/bin/make -C format -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/format' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/format' /usr/bin/make -C blastinput -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput/unit_test' TEST -- algo/blast/blastinput/unit_test/blastinput_unit_test make[8]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput/unit_test' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput' /bin/echo 'Warning: non-existent sub-project "blast_sra_input"' Warning: non-existent sub-project "blast_sra_input" /usr/bin/make -C igblast -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/igblast' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/igblast' /bin/echo 'Warning: non-existent sub-project "gumbel_params"' Warning: non-existent sub-project "gumbel_params" /usr/bin/make -C unit_tests -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests' /usr/bin/make -C blast_format -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' TEST -- algo/blast/unit_tests/blast_format/blast_format_unit_test make[8]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' TEST -- algo/blast/unit_tests/blastdb/bdbloader_unit_test make[8]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/make -C seqdb_reader -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test make[8]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make -C api -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blast_unit_test TEST -- algo/blast/unit_tests/api/aalookup_unit_test TEST -- algo/blast/unit_tests/api/seqsrc_unit_test TEST -- algo/blast/unit_tests/api/delta_unit_test TEST -- algo/blast/unit_tests/api/ntlookup_unit_test TEST -- algo/blast/unit_tests/api/seqinfosrc_unit_test TEST -- algo/blast/unit_tests/api/setupfactory_unit_test TEST -- algo/blast/unit_tests/api/search_strategy_unit_test TEST -- algo/blast/unit_tests/api/redoalignment_unit_test TEST -- algo/blast/unit_tests/api/queryinfo_unit_test TEST -- algo/blast/unit_tests/api/querydata_unit_test TEST -- algo/blast/unit_tests/api/pssmenginefreqratios_unit_test TEST -- algo/blast/unit_tests/api/blastsetup_unit_test TEST -- algo/blast/unit_tests/api/blastextend_unit_test TEST -- algo/blast/unit_tests/api/blastdiag_unit_test TEST -- algo/blast/unit_tests/api/pssmcreate_unit_test TEST -- algo/blast/unit_tests/api/psiblast_iteration_unit_test TEST -- algo/blast/unit_tests/api/hspfilter_besthit_unit_test TEST -- algo/blast/unit_tests/api/hspfilter_culling_unit_test TEST -- algo/blast/unit_tests/api/optionshandle_unit_test TEST -- algo/blast/unit_tests/api/msa2pssm_unit_test TEST -- algo/blast/unit_tests/api/tracebacksearch_unit_test TEST -- algo/blast/unit_tests/api/traceback_unit_test TEST -- algo/blast/unit_tests/api/psibl2seq_unit_test TEST -- algo/blast/unit_tests/api/psiblast_unit_test TEST -- algo/blast/unit_tests/api/prelimsearch_unit_test TEST -- algo/blast/unit_tests/api/phiblast_unit_test TEST -- algo/blast/unit_tests/api/split_query_unit_test TEST -- algo/blast/unit_tests/api/scoreblk_unit_test TEST -- algo/blast/unit_tests/api/hspstream_unit_test TEST -- algo/blast/unit_tests/api/rps_unit_test TEST -- algo/blast/unit_tests/api/gapinfo_unit_test TEST -- algo/blast/unit_tests/api/blasthits_unit_test TEST -- algo/blast/unit_tests/api/linkhsp_unit_test TEST -- algo/blast/unit_tests/api/blastengine_unit_test TEST -- algo/blast/unit_tests/api/subj_ranges_unit_test TEST -- algo/blast/unit_tests/api/version_reference_unit_test TEST -- algo/blast/unit_tests/api/ntscan_unit_test TEST -- algo/blast/unit_tests/api/aascan_unit_test TEST -- algo/blast/unit_tests/api/remote_blast_unit_test TEST -- algo/blast/unit_tests/api/uniform_search_unit_test TEST -- algo/blast/unit_tests/api/blastfilter_unit_test TEST -- algo/blast/unit_tests/api/blastoptions_unit_test TEST -- algo/blast/unit_tests/api/gencode_singleton_unit_test TEST -- algo/blast/unit_tests/api/bl2seq_unit_test TEST -- algo/blast/unit_tests/api/stat_unit_test TEST -- algo/blast/unit_tests/api/magicblast_unit_test make[8]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests' make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast' /usr/bin/make -C segmask -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/segmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/segmask' /bin/echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" /bin/echo 'Warning: non-existent sub-project "structure"' Warning: non-existent sub-project "structure" /bin/echo 'Warning: non-existent sub-project "ms"' Warning: non-existent sub-project "ms" /bin/echo 'Warning: non-existent sub-project "gnomon"' Warning: non-existent sub-project "gnomon" /bin/echo 'Warning: non-existent sub-project "tree"' Warning: non-existent sub-project "tree" /bin/echo 'Warning: non-existent sub-project "phy_tree"' Warning: non-existent sub-project "phy_tree" /bin/echo 'Warning: non-existent sub-project "seqqa"' Warning: non-existent sub-project "seqqa" /bin/echo 'Warning: non-existent sub-project "cobalt"' Warning: non-existent sub-project "cobalt" /bin/echo 'Warning: non-existent sub-project "text"' Warning: non-existent sub-project "text" /bin/echo 'Warning: non-existent sub-project "volume_merge"' Warning: non-existent sub-project "volume_merge" /bin/echo 'Warning: non-existent sub-project "primer"' Warning: non-existent sub-project "primer" /bin/echo 'Warning: non-existent sub-project "id_mapper"' Warning: non-existent sub-project "id_mapper" make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo' /usr/bin/make -C misc -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/misc' /usr/bin/make -C third_party -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/misc/third_party' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/misc/third_party' /usr/bin/make -C third_party_static -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/misc/third_party_static' NOTE: Skipping project third_party_static due to unmet requirements: -DLL make[7]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/misc/third_party_static' make[7]: Nothing to be done for 'mark-as-disabled_r'. make[7]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/misc/third_party_static' make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/misc/third_party_static' /bin/echo 'Warning: non-existent sub-project "clog"' Warning: non-existent sub-project "clog" /bin/echo 'Warning: non-existent sub-project "grid_cgi"' Warning: non-existent sub-project "grid_cgi" /bin/echo 'Warning: non-existent sub-project "xmlwrapp"' Warning: non-existent sub-project "xmlwrapp" /bin/echo 'Warning: non-existent sub-project "eutils_client"' Warning: non-existent sub-project "eutils_client" /bin/echo 'Warning: non-existent sub-project "hydra_client"' Warning: non-existent sub-project "hydra_client" /bin/echo 'Warning: non-existent sub-project "discrepancy_report"' Warning: non-existent sub-project "discrepancy_report" /bin/echo 'Warning: non-existent sub-project "discrepancy"' Warning: non-existent sub-project "discrepancy" /bin/echo 'Warning: non-existent sub-project "xmlreaders"' Warning: non-existent sub-project "xmlreaders" /bin/echo 'Warning: non-existent sub-project "hgvs"' Warning: non-existent sub-project "hgvs" /bin/echo 'Warning: non-existent sub-project "netstorage"' Warning: non-existent sub-project "netstorage" /bin/echo 'Warning: non-existent sub-project "jsonwrapp"' Warning: non-existent sub-project "jsonwrapp" /bin/echo 'Warning: non-existent sub-project "biosample_util"' Warning: non-existent sub-project "biosample_util" /bin/echo 'Warning: non-existent sub-project "data_loaders_util"' Warning: non-existent sub-project "data_loaders_util" /bin/echo 'Warning: non-existent sub-project "lapackwrapp"' Warning: non-existent sub-project "lapackwrapp" /bin/echo 'Warning: non-existent sub-project "cgi_redirect"' Warning: non-existent sub-project "cgi_redirect" make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/misc' /bin/echo 'Warning: non-existent sub-project "gui"' Warning: non-existent sub-project "gui" /usr/bin/make -C app -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app' /bin/echo 'Warning: non-existent sub-project "asn2asn"' Warning: non-existent sub-project "asn2asn" /bin/echo 'Warning: non-existent sub-project "asn2fasta"' Warning: non-existent sub-project "asn2fasta" /bin/echo 'Warning: non-existent sub-project "asn2flat"' Warning: non-existent sub-project "asn2flat" /bin/echo 'Warning: non-existent sub-project "asnval"' Warning: non-existent sub-project "asnval" /bin/echo 'Warning: non-existent sub-project "asn_cleanup"' Warning: non-existent sub-project "asn_cleanup" /bin/echo 'Warning: non-existent sub-project "id1_fetch"' Warning: non-existent sub-project "id1_fetch" /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' SKIP -- app/blast/blastp SKIP -- app/blast/blastn SKIP -- app/blast/blastx SKIP -- app/blast/tblastn SKIP -- app/blast/tblastx SKIP -- app/blast/psiblast SKIP -- app/blast/rpsblast SKIP -- app/blast/rpstblastn SKIP -- app/blast/blast_formatter SKIP -- app/blast/deltablast SKIP -- app/blast/seedtop make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /bin/echo 'Warning: non-existent sub-project "convert_seq"' Warning: non-existent sub-project "convert_seq" /bin/echo 'Warning: non-existent sub-project "nmer_repeats"' Warning: non-existent sub-project "nmer_repeats" /bin/echo 'Warning: non-existent sub-project "objmgr"' Warning: non-existent sub-project "objmgr" /bin/echo 'Warning: non-existent sub-project "gi2taxid"' Warning: non-existent sub-project "gi2taxid" /bin/echo 'Warning: non-existent sub-project "netschedule"' Warning: non-existent sub-project "netschedule" /bin/echo 'Warning: non-existent sub-project "grid"' Warning: non-existent sub-project "grid" /bin/echo 'Warning: non-existent sub-project "netstorage"' Warning: non-existent sub-project "netstorage" /bin/echo 'Warning: non-existent sub-project "igblast"' Warning: non-existent sub-project "igblast" /usr/bin/make -C winmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' SKIP -- app/winmasker/winmasker make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' /usr/bin/make -C dustmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/dustmasker' SKIP -- app/dustmasker/dustmasker make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/dustmasker' /usr/bin/make -C segmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/segmasker' SKIP -- app/segmasker/segmasker make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/segmasker' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcmd SKIP -- app/blastdb/makeblastdb SKIP -- app/blastdb/blastdb_aliastool SKIP -- app/blastdb/blastdbcheck SKIP -- app/blastdb/convert2blastmask SKIP -- app/blastdb/blastdbcp SKIP -- app/blastdb/makeprofiledb make[6]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /bin/echo 'Warning: non-existent sub-project "vecscreen"' Warning: non-existent sub-project "vecscreen" /bin/echo 'Warning: non-existent sub-project "agpconvert"' Warning: non-existent sub-project "agpconvert" /bin/echo 'Warning: non-existent sub-project "id2_fetch"' Warning: non-existent sub-project "id2_fetch" /bin/echo 'Warning: non-existent sub-project "agp_validate"' Warning: non-existent sub-project "agp_validate" /bin/echo 'Warning: non-existent sub-project "objextract"' Warning: non-existent sub-project "objextract" /bin/echo 'Warning: non-existent sub-project "bdb_env_keeper"' Warning: non-existent sub-project "bdb_env_keeper" /bin/echo 'Warning: non-existent sub-project "nw_aligner"' Warning: non-existent sub-project "nw_aligner" /bin/echo 'Warning: non-existent sub-project "speedtest"' Warning: non-existent sub-project "speedtest" /bin/echo 'Warning: non-existent sub-project "idmapper"' Warning: non-existent sub-project "idmapper" /bin/echo 'Warning: non-existent sub-project "formatguess"' Warning: non-existent sub-project "formatguess" /bin/echo 'Warning: non-existent sub-project "multireader"' Warning: non-existent sub-project "multireader" /bin/echo 'Warning: non-existent sub-project "read_blast_result"' Warning: non-existent sub-project "read_blast_result" /bin/echo 'Warning: non-existent sub-project "splign"' Warning: non-existent sub-project "splign" /bin/echo 'Warning: non-existent sub-project "hfilter"' Warning: non-existent sub-project "hfilter" /bin/echo 'Warning: non-existent sub-project "annotwriter"' Warning: non-existent sub-project "annotwriter" /bin/echo 'Warning: non-existent sub-project "compart"' Warning: non-existent sub-project "compart" /bin/echo 'Warning: non-existent sub-project "streamtest"' Warning: non-existent sub-project "streamtest" /bin/echo 'Warning: non-existent sub-project "lds2_indexer"' Warning: non-existent sub-project "lds2_indexer" /bin/echo 'Warning: non-existent sub-project "discrepancy_report"' Warning: non-existent sub-project "discrepancy_report" /bin/echo 'Warning: non-existent sub-project "biosample_chk"' Warning: non-existent sub-project "biosample_chk" /bin/echo 'Warning: non-existent sub-project "gap_stats"' Warning: non-existent sub-project "gap_stats" /bin/echo 'Warning: non-existent sub-project "table2asn"' Warning: non-existent sub-project "table2asn" /bin/echo 'Warning: non-existent sub-project "srcchk"' Warning: non-existent sub-project "srcchk" /bin/echo 'Warning: non-existent sub-project "tableval"' Warning: non-existent sub-project "tableval" /bin/echo 'Warning: non-existent sub-project "ncbi_encrypt"' Warning: non-existent sub-project "ncbi_encrypt" /bin/echo 'Warning: non-existent sub-project "ssub_fork"' Warning: non-existent sub-project "ssub_fork" /bin/echo 'Warning: non-existent sub-project "asn_cache"' Warning: non-existent sub-project "asn_cache" /bin/echo 'Warning: non-existent sub-project "magicblast"' Warning: non-existent sub-project "magicblast" /bin/echo 'Warning: non-existent sub-project "split_cache"' Warning: non-existent sub-project "split_cache" /bin/echo 'Warning: non-existent sub-project "wig2table"' Warning: non-existent sub-project "wig2table" /bin/echo 'Warning: non-existent sub-project "netcache"' Warning: non-existent sub-project "netcache" /bin/echo 'Warning: non-existent sub-project "rmblastn"' Warning: non-existent sub-project "rmblastn" /bin/echo 'Warning: non-existent sub-project "dblb"' Warning: non-existent sub-project "dblb" /bin/echo 'Warning: non-existent sub-project "tls"' Warning: non-existent sub-project "tls" /bin/echo 'Warning: non-existent sub-project "idfetch"' Warning: non-existent sub-project "idfetch" make[5]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/app' /bin/echo 'Warning: non-existent sub-project "sample"' Warning: non-existent sub-project "sample" /bin/echo 'Warning: non-existent sub-project "internal"' Warning: non-existent sub-project "internal" make[4]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build' ---------------------------------------------------------------------- Building check script... SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf (unmet CHECK_REQUIRES) SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf (unmet CHECK_REQUIRES) SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf (unmet CHECK_REQUIRES) SKIP -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test (unmet CHECK_REQUIRES) SKIP -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test (unmet CHECK_REQUIRES) SKIP -- objtools/align_format/unit_test/align_format_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/blastinput/unit_test/blastinput_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/blast_format/blast_format_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/blastdb/bdbloader_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/aalookup_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/seqsrc_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/delta_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/ntlookup_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/seqinfosrc_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/setupfactory_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/search_strategy_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/redoalignment_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/queryinfo_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/querydata_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/pssmenginefreqratios_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastsetup_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastextend_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/pssmcreate_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/psiblast_iteration_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/hspfilter_besthit_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/hspfilter_culling_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/optionshandle_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/msa2pssm_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/tracebacksearch_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/traceback_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/psibl2seq_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/psiblast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/prelimsearch_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/phiblast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/split_query_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/scoreblk_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/hspstream_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/rps_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/gapinfo_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blasthits_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/linkhsp_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastengine_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/subj_ranges_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/version_reference_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/ntscan_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/remote_blast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/uniform_search_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastfilter_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastoptions_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/gencode_singleton_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/bl2seq_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/stat_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/magicblast_unit_test (unmet CHECK_REQUIRES) Done. OK -- [serial/datatool] datatool.sh (real 0.53, user 0.16, sys 0.04) SKP -- [serial/datatool] datatool_xml.sh OK -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test (real 0.07, user 0.00, sys 0.02) OK -- [algo/blast/unit_tests/api] blastdiag_unit_test (real 0.16, user 0.00, sys 0.00) ERR [201] -- [algo/blast/unit_tests/api] aascan_unit_test (real 33.81, user 0.08, sys 0.05) Succeeded : 3 Timeout : 0 Failed : 1 Absent : 1 /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.meta_r:46: recipe for target 'check_r.real' failed make[3]: *** [check_r.real] Error 7 make[3]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build' Makefile:33: recipe for target 'check' failed make[2]: *** [check] Error 2 make[2]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++' dh_auto_test: /usr/bin/make -j1 check VERBOSE=1 returned exit code 2 debian/rules:63: recipe for target 'override_dh_auto_test' failed make[1]: [override_dh_auto_test] Error 2 (ignored) c++/BUILD/build/check.sh concat_err cat c++/BUILD/build/check.sh.out_err ERR [201] -- [algo/blast/unit_tests/api] aascan_unit_test (real 33.81, user 0.08, sys 0.05) ====================================================================== aascan_unit_test ====================================================================== 17244/000/0000/PB 4000435C87D5E071 0001/0001 2017-01-16T23:57:59.893010 lgw01-31 UNK_CLIENT UNK_SESSION aascan_unit_test start /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test Running 4 test cases... 17244/000/0000/PE 4000435C87D5E071 0002/0002 2017-01-16T23:57:59.982982 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#1000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 17244/000/0000/PE 4000435C87D5E071 0003/0003 2017-01-16T23:57:59.983074 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=lgw01-31.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 17244/000/0000/PE 4000435C87D5E071 0004/0004 2017-01-16T23:57:59.983119 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 17244/000/0000/PE 4000435C87D5E071 0005/0005 2017-01-16T23:57:59.983161 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 17244/000/0000/PE 4000435C87D5E071 0007/0007 2017-01-16T23:57:59.987580 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#2000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 17244/000/0000/PE 4000435C87D5E071 0008/0008 2017-01-16T23:57:59.987649 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=lgw01-31.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 17244/000/0000/PE 4000435C87D5E071 0009/0009 2017-01-16T23:57:59.987713 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 17244/000/0000/PE 4000435C87D5E071 0010/0010 2017-01-16T23:57:59.987767 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 17244/000/0000/PE 4000435C87D5E071 0012/0012 2017-01-16T23:58:00.992274 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#3000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 17244/000/0000/PE 4000435C87D5E071 0013/0013 2017-01-16T23:58:00.992362 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=lgw01-31.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 17244/000/0000/PE 4000435C87D5E071 0014/0014 2017-01-16T23:58:00.992422 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 17244/000/0000/PE 4000435C87D5E071 0015/0015 2017-01-16T23:58:00.992472 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 17244/000/0000/PE 4000435C87D5E071 0017/0017 2017-01-16T23:58:03.496544 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#4000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 17244/000/0000/PE 4000435C87D5E071 0018/0018 2017-01-16T23:58:03.496621 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=lgw01-31.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 17244/000/0000/PE 4000435C87D5E071 0019/0019 2017-01-16T23:58:03.496655 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 17244/000/0000/PE 4000435C87D5E071 0020/0020 2017-01-16T23:58:03.496682 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 17244/000/0000/PE 4000435C87D5E071 0022/0022 2017-01-16T23:58:08.251707 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#5000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 17244/000/0000/PE 4000435C87D5E071 0023/0023 2017-01-16T23:58:08.251776 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=lgw01-31.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 17244/000/0000/PE 4000435C87D5E071 0024/0024 2017-01-16T23:58:08.251811 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 17244/000/0000/PE 4000435C87D5E071 0025/0025 2017-01-16T23:58:08.251838 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/ScanOffsetTest": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(251): last checkpoint: "ScanOffsetTest" fixture entry. 17244/000/0000/PE 4000435C87D5E071 0029/0029 2017-01-16T23:58:08.261030 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#6000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 17244/000/0000/PE 4000435C87D5E071 0030/0030 2017-01-16T23:58:08.261075 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=lgw01-31.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 17244/000/0000/PE 4000435C87D5E071 0031/0031 2017-01-16T23:58:08.261106 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 17244/000/0000/PE 4000435C87D5E071 0032/0032 2017-01-16T23:58:08.261140 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 17244/000/0000/PE 4000435C87D5E071 0034/0034 2017-01-16T23:58:08.263732 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#7000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 17244/000/0000/PE 4000435C87D5E071 0035/0035 2017-01-16T23:58:08.263769 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=lgw01-31.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 17244/000/0000/PE 4000435C87D5E071 0036/0036 2017-01-16T23:58:08.263799 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 17244/000/0000/PE 4000435C87D5E071 0037/0037 2017-01-16T23:58:08.263822 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 17244/000/0000/PE 4000435C87D5E071 0039/0039 2017-01-16T23:58:09.268007 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#8000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 17244/000/0000/PE 4000435C87D5E071 0040/0040 2017-01-16T23:58:09.268076 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=lgw01-31.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 17244/000/0000/PE 4000435C87D5E071 0041/0041 2017-01-16T23:58:09.268113 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 17244/000/0000/PE 4000435C87D5E071 0042/0042 2017-01-16T23:58:09.268140 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 17244/000/0000/PE 4000435C87D5E071 0044/0044 2017-01-16T23:58:11.772384 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#9000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 17244/000/0000/PE 4000435C87D5E071 0045/0045 2017-01-16T23:58:11.772490 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=lgw01-31.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 17244/000/0000/PE 4000435C87D5E071 0046/0046 2017-01-16T23:58:11.772549 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 17244/000/0000/PE 4000435C87D5E071 0047/0047 2017-01-16T23:58:11.772603 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 17244/000/0000/PE 4000435C87D5E071 0049/0049 2017-01-16T23:58:16.527441 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#10000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 17244/000/0000/PE 4000435C87D5E071 0050/0050 2017-01-16T23:58:16.527567 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=lgw01-31.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 17244/000/0000/PE 4000435C87D5E071 0051/0051 2017-01-16T23:58:16.527626 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 17244/000/0000/PE 4000435C87D5E071 0052/0052 2017-01-16T23:58:16.527674 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/ScanMaxHitsTest": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(331): last checkpoint: "ScanMaxHitsTest" fixture entry. 17244/000/0000/PE 4000435C87D5E071 0056/0056 2017-01-16T23:58:16.533122 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#11000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 17244/000/0000/PE 4000435C87D5E071 0057/0057 2017-01-16T23:58:16.533186 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=lgw01-31.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 17244/000/0000/PE 4000435C87D5E071 0058/0058 2017-01-16T23:58:16.533238 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 17244/000/0000/PE 4000435C87D5E071 0059/0059 2017-01-16T23:58:16.533281 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 17244/000/0000/PE 4000435C87D5E071 0061/0061 2017-01-16T23:58:16.536960 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#12000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 17244/000/0000/PE 4000435C87D5E071 0062/0062 2017-01-16T23:58:16.537023 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=lgw01-31.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 17244/000/0000/PE 4000435C87D5E071 0063/0063 2017-01-16T23:58:16.537074 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 17244/000/0000/PE 4000435C87D5E071 0064/0064 2017-01-16T23:58:16.537115 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 17244/000/0000/PE 4000435C87D5E071 0066/0066 2017-01-16T23:58:17.540894 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#13000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 17244/000/0000/PE 4000435C87D5E071 0067/0067 2017-01-16T23:58:17.540955 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=lgw01-31.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 17244/000/0000/PE 4000435C87D5E071 0068/0068 2017-01-16T23:58:17.540987 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 17244/000/0000/PE 4000435C87D5E071 0069/0069 2017-01-16T23:58:17.541014 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 17244/000/0000/PE 4000435C87D5E071 0071/0071 2017-01-16T23:58:20.045764 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#14000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 17244/000/0000/PE 4000435C87D5E071 0072/0072 2017-01-16T23:58:20.045829 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=lgw01-31.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 17244/000/0000/PE 4000435C87D5E071 0073/0073 2017-01-16T23:58:20.045864 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 17244/000/0000/PE 4000435C87D5E071 0074/0074 2017-01-16T23:58:20.045892 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 17244/000/0000/PE 4000435C87D5E071 0076/0076 2017-01-16T23:58:24.799938 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#15000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 17244/000/0000/PE 4000435C87D5E071 0077/0077 2017-01-16T23:58:24.800029 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=lgw01-31.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 17244/000/0000/PE 4000435C87D5E071 0078/0078 2017-01-16T23:58:24.800085 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 17244/000/0000/PE 4000435C87D5E071 0079/0079 2017-01-16T23:58:24.800127 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/SkipMaskedRanges": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(384): last checkpoint: "SkipMaskedRanges" fixture entry. 17244/000/0000/PE 4000435C87D5E071 0083/0083 2017-01-16T23:58:24.805001 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#16000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 17244/000/0000/PE 4000435C87D5E071 0084/0084 2017-01-16T23:58:24.805085 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=lgw01-31.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 17244/000/0000/PE 4000435C87D5E071 0085/0085 2017-01-16T23:58:24.805143 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 17244/000/0000/PE 4000435C87D5E071 0086/0086 2017-01-16T23:58:24.805187 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 17244/000/0000/PE 4000435C87D5E071 0088/0088 2017-01-16T23:58:24.808067 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#17000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 17244/000/0000/PE 4000435C87D5E071 0089/0089 2017-01-16T23:58:24.808116 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=lgw01-31.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 17244/000/0000/PE 4000435C87D5E071 0090/0090 2017-01-16T23:58:24.808148 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 17244/000/0000/PE 4000435C87D5E071 0091/0091 2017-01-16T23:58:24.808174 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 17244/000/0000/PE 4000435C87D5E071 0093/0093 2017-01-16T23:58:25.812863 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#18000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 17244/000/0000/PE 4000435C87D5E071 0094/0094 2017-01-16T23:58:25.812923 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=lgw01-31.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 17244/000/0000/PE 4000435C87D5E071 0095/0095 2017-01-16T23:58:25.812956 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 17244/000/0000/PE 4000435C87D5E071 0096/0096 2017-01-16T23:58:25.812983 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 17244/000/0000/PE 4000435C87D5E071 0098/0098 2017-01-16T23:58:28.317408 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#19000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 17244/000/0000/PE 4000435C87D5E071 0099/0099 2017-01-16T23:58:28.317480 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=lgw01-31.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 17244/000/0000/PE 4000435C87D5E071 0100/0100 2017-01-16T23:58:28.317513 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 17244/000/0000/PE 4000435C87D5E071 0101/0101 2017-01-16T23:58:28.317541 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 17244/000/0000/PE 4000435C87D5E071 0103/0103 2017-01-16T23:58:33.071778 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#20000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 17244/000/0000/PE 4000435C87D5E071 0104/0104 2017-01-16T23:58:33.071849 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=lgw01-31.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 17244/000/0000/PE 4000435C87D5E071 0105/0105 2017-01-16T23:58:33.071882 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 17244/000/0000/PE 4000435C87D5E071 0106/0106 2017-01-16T23:58:33.071909 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/ScanCheckScores": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(434): last checkpoint: "ScanCheckScores" fixture entry. Executed 4 test cases. *** 4 failures are detected in the test module "Master Test Suite" 17244/000/0000/PE 4000435C87D5E071 0110/0110 2017-01-16T23:58:33.111234 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test extra ncbi_phid=4000435C87D5E0710000000000000001 17244/000/0000/PE 4000435C87D5E071 0111/0111 2017-01-16T23:58:33.111361 lgw01-31 UNK_CLIENT 4000435C87D5E071_0000SID aascan_unit_test stop 201 33.232502937 Command exited with non-zero status 201 real 33.81 user 0.08 sys 0.05 Start time : 01/16/2017 23:57:59 Stop time : 01/16/2017 23:58:33 Load averages: 1.79 3.40 3.38 @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ @@@ EXIT CODE: 201 make[1]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0' fakeroot debian/rules binary dh binary -Dc++ --with autotools_dev dh_testroot -O-Dc\+\+ dh_prep -O-Dc\+\+ dh_installdirs -O-Dc\+\+ debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0' # cp c++/BUILD/lib/*.so debian/ncbi-blast+/usr/lib/ncbi-blast+/ cp c++/BUILD/bin/* debian/ncbi-blast+/usr/bin/ make[1]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0' debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0' echo "Nothing to do for architecture independant installs" Nothing to do for architecture independant installs make[1]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0' debian/rules override_dh_install-arch make[1]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0' # dh_install mv debian/ncbi-blast+/usr/bin/rpsblast debian/ncbi-blast+/usr/bin/rpsblast+ mv debian/ncbi-blast+/usr/bin/seedtop debian/ncbi-blast+/usr/bin/seedtop+ mv debian/ncbi-blast+/usr/bin/legacy_blast.pl debian/ncbi-blast+/usr/bin/legacy_blast mv debian/ncbi-blast+/usr/bin/update_blastdb.pl debian/ncbi-blast+/usr/bin/update_blastdb mv debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter.py \ debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter rm -f debian/ncbi-blast+/usr/bin/*test* debian/ncbi-blast+/usr/bin/seqdb_demo \ debian/ncbi-blast+/usr/bin/datatool debian/ncbi-blast+/usr/bin/run_with_lock \ debian/ncbi-blast+/usr/bin/project_tree_builder for x in debian/ncbi-blast+/usr/bin/*; do \ LD_LIBRARY_PATH=c++/BUILD/lib ldd $x; \ done 2>/dev/null | awk '/BUILD/ { print $3 }' | sort -u | \ xargs cp -v -t debian/ncbi-blast+/usr/lib/ncbi-blast+ 'c++/BUILD/lib/libalign_format.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libalign_format.so' 'c++/BUILD/lib/libbiblio.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libbiblio.so' 'c++/BUILD/lib/libblast.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblast.so' 'c++/BUILD/lib/libblast_services.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblast_services.so' 'c++/BUILD/lib/libblastdb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastdb.so' 'c++/BUILD/lib/libblastdb_format.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastdb_format.so' 'c++/BUILD/lib/libblastinput.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastinput.so' 'c++/BUILD/lib/libblastxml.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastxml.so' 'c++/BUILD/lib/libblastxml2.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastxml2.so' 'c++/BUILD/lib/libcomposition_adjustment.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libcomposition_adjustment.so' 'c++/BUILD/lib/libconnect.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libconnect.so' 'c++/BUILD/lib/libcreaders.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libcreaders.so' 'c++/BUILD/lib/libgbseq.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgbseq.so' 'c++/BUILD/lib/libgene_info.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgene_info.so' 'c++/BUILD/lib/libgeneral.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgeneral.so' 'c++/BUILD/lib/libgenome_collection.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgenome_collection.so' 'c++/BUILD/lib/libid1.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libid1.so' 'c++/BUILD/lib/libid2.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libid2.so' 'c++/BUILD/lib/libmedlars.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmedlars.so' 'c++/BUILD/lib/libmedline.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmedline.so' 'c++/BUILD/lib/libmla.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmla.so' 'c++/BUILD/lib/libmlacli.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmlacli.so' 'c++/BUILD/lib/libncbi_xloader_blastdb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xloader_blastdb.so' 'c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xloader_blastdb_rmt.so' 'c++/BUILD/lib/libncbi_xloader_genbank.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xloader_genbank.so' 'c++/BUILD/lib/libncbi_xreader.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader.so' 'c++/BUILD/lib/libncbi_xreader_cache.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader_cache.so' 'c++/BUILD/lib/libncbi_xreader_id1.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader_id1.so' 'c++/BUILD/lib/libncbi_xreader_id2.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader_id2.so' 'c++/BUILD/lib/libpub.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libpub.so' 'c++/BUILD/lib/libpubmed.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libpubmed.so' 'c++/BUILD/lib/libscoremat.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libscoremat.so' 'c++/BUILD/lib/libseq.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseq.so' 'c++/BUILD/lib/libseqcode.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqcode.so' 'c++/BUILD/lib/libseqdb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqdb.so' 'c++/BUILD/lib/libseqedit.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqedit.so' 'c++/BUILD/lib/libseqmasks_io.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqmasks_io.so' 'c++/BUILD/lib/libseqset.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqset.so' 'c++/BUILD/lib/libseqsplit.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqsplit.so' 'c++/BUILD/lib/libsequtil.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libsequtil.so' 'c++/BUILD/lib/libsubmit.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libsubmit.so' 'c++/BUILD/lib/libtables.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libtables.so' 'c++/BUILD/lib/libtaxon1.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libtaxon1.so' 'c++/BUILD/lib/libtaxon3.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libtaxon3.so' 'c++/BUILD/lib/libvalid.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libvalid.so' 'c++/BUILD/lib/libwritedb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libwritedb.so' 'c++/BUILD/lib/libxalgoblastdbindex.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgoblastdbindex.so' 'c++/BUILD/lib/libxalgodustmask.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgodustmask.so' 'c++/BUILD/lib/libxalgosegmask.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgosegmask.so' 'c++/BUILD/lib/libxalgowinmask.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgowinmask.so' 'c++/BUILD/lib/libxalnmgr.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalnmgr.so' 'c++/BUILD/lib/libxblast.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxblast.so' 'c++/BUILD/lib/libxblastformat.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxblastformat.so' 'c++/BUILD/lib/libxcgi.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxcgi.so' 'c++/BUILD/lib/libxcleanup.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxcleanup.so' 'c++/BUILD/lib/libxcompress.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxcompress.so' 'c++/BUILD/lib/libxconnect.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxconnect.so' 'c++/BUILD/lib/libxformat.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxformat.so' 'c++/BUILD/lib/libxhtml.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxhtml.so' 'c++/BUILD/lib/libxncbi.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxncbi.so' 'c++/BUILD/lib/libxnetblast.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxnetblast.so' 'c++/BUILD/lib/libxnetblastcli.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxnetblastcli.so' 'c++/BUILD/lib/libxobjmgr.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxobjmgr.so' 'c++/BUILD/lib/libxobjread.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxobjread.so' 'c++/BUILD/lib/libxobjutil.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxobjutil.so' 'c++/BUILD/lib/libxregexp.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxregexp.so' 'c++/BUILD/lib/libxser.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxser.so' 'c++/BUILD/lib/libxutil.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxutil.so' make[1]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0' debian/rules override_dh_install-indep make[1]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0' #if test -d debian/ncbi-blast+-legacy/usr/bin; then cp debian/legacy/legacy.sh debian/ncbi-blast+-legacy/usr/bin/; fi for x in blastall megablast blastpgp bl2seq rpsblast fastacmd formatdb \ seedtop; do \ sed -e "s/.{.*}/$x/" debian/legacy/legacy.sh > debian/ncbi-blast+-legacy/usr/bin/$x; \ chmod +x debian/ncbi-blast+-legacy/usr/bin/$x; \ done make[1]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0' dh_installdocs -O-Dc\+\+ dh_installchangelogs -O-Dc\+\+ dh_installexamples -O-Dc\+\+ dh_installman -O-Dc\+\+ dh_installcatalogs -O-Dc\+\+ dh_installcron -O-Dc\+\+ dh_installdebconf -O-Dc\+\+ dh_installemacsen -O-Dc\+\+ dh_installifupdown -O-Dc\+\+ dh_installinfo -O-Dc\+\+ dh_installinit -O-Dc\+\+ dh_installmenu -O-Dc\+\+ dh_installmime -O-Dc\+\+ dh_installmodules -O-Dc\+\+ dh_installlogcheck -O-Dc\+\+ dh_installlogrotate -O-Dc\+\+ dh_installpam -O-Dc\+\+ dh_installppp -O-Dc\+\+ dh_installudev -O-Dc\+\+ dh_installgsettings -O-Dc\+\+ dh_bugfiles -O-Dc\+\+ dh_ucf -O-Dc\+\+ dh_lintian -O-Dc\+\+ dh_gconf -O-Dc\+\+ dh_icons -O-Dc\+\+ dh_perl -O-Dc\+\+ dh_usrlocal -O-Dc\+\+ dh_link -O-Dc\+\+ dh_installwm -O-Dc\+\+ dh_installxfonts -O-Dc\+\+ dh_strip_nondeterminism -O-Dc\+\+ dh_compress -O-Dc\+\+ dh_fixperms -O-Dc\+\+ dh_strip -O-Dc\+\+ dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: ncbi-blast+ dh_strip debug symbol extraction: packages to act on: ncbi-blast+ dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package ncbi-blast+: unused substitution variable ${perl:Depends} /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs -O-Dc\+\+ dh_shlibdeps -O-Dc\+\+ dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xloader_genbank.so was not linked against libconnect.so (it uses none of the library's symbols) dh_installdeb -O-Dc\+\+ debian/rules override_dh_gencontrol-indep make[1]: Entering directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0' dh_gencontrol -pblast2 -- -v1:2.6.0-1 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform amd64: ncbi-blast+ dh_gencontrol debug symbol wrapper: packages to act on: dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol -Nblast2 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform amd64: ncbi-blast+ dh_gencontrol debug symbol wrapper: packages to act on: ncbi-blast+ dh_gencontrol debug symbol wrapper: ignored packages: blast2 dh_gencontrol debug symbol wrapper: processing package ncbi-blast+ (pkgdir debian/ncbi-blast+, ddeb package dir debian/ncbi-blast+-dbgsym) grep: debian/ncbi-blast+/DEBIAN/control: No such file or directory WARNING! debian/ncbi-blast+/DEBIAN/control does not contain Version, packaging error! Cannot adjust to binary package Version: dh_gencontrol debug symbol wrapper: building ncbi-blast+-dbgsym_2.6.0-1_amd64.ddeb dpkg-deb: building package 'ncbi-blast+-dbgsym' in '../ncbi-blast+-dbgsym_2.6.0-1_amd64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile ncbi-blast+-dbgsym_2.6.0-1_amd64.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe make[1]: Leaving directory '/build/ncbi-blast+-GcQwD4/ncbi-blast+-2.6.0' dh_gencontrol -O-Dc\+\+ -Nncbi-blast\+-legacy -Nblast2 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform amd64: ncbi-blast+ dh_gencontrol debug symbol wrapper: packages to act on: ncbi-blast+ dh_gencontrol debug symbol wrapper: ignored packages: blast2 ncbi-blast+-legacy dh_gencontrol debug symbol wrapper: no debian/ncbi-blast+-dbgsym, skipping package ncbi-blast+ dh_md5sums -O-Dc\+\+ dh_builddeb -O-Dc\+\+ INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing ncbi-blast+ (in debian/ncbi-blast+); do_strip: , oemstrip: pkgstriptranslations: processing blast2 (in debian/blast2); do_strip: , oemstrip: pkgstriptranslations: processing ncbi-blast+-legacy (in debian/ncbi-blast+-legacy); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/ncbi-blast+-legacy/DEBIAN/control, package ncbi-blast+-legacy, directory debian/ncbi-blast+-legacy INFO: pkgstripfiles: waiting for lock (ncbi-blast+-legacy) ... INFO: pkgstripfiles: waiting for lock (ncbi-blast+-legacy) ... INFO: pkgstripfiles: waiting for lock (ncbi-blast+-legacy) ... INFO: pkgstripfiles: waiting for lock (ncbi-blast+-legacy) ... INFO: pkgstripfiles: waiting for lock (ncbi-blast+-legacy) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/blast2/DEBIAN/control, package blast2, directory debian/blast2 INFO: pkgstripfiles: waiting for lock (blast2) ... INFO: pkgstripfiles: waiting for lock (ncbi-blast+-legacy) ... INFO: pkgstripfiles: waiting for lock (blast2) ... INFO: pkgstripfiles: waiting for lock (ncbi-blast+-legacy) ... INFO: pkgstripfiles: waiting for lock (blast2) ... INFO: pkgstripfiles: waiting for lock (ncbi-blast+-legacy) ... INFO: pkgstripfiles: waiting for lock (blast2) ... INFO: pkgstripfiles: waiting for lock (ncbi-blast+-legacy) ... INFO: pkgstripfiles: waiting for lock (blast2) ... INFO: pkgstripfiles: waiting for lock (ncbi-blast+-legacy) ... INFO: pkgstripfiles: waiting for lock (blast2) ... INFO: pkgstripfiles: waiting for lock (ncbi-blast+-legacy) ... INFO: pkgstripfiles: waiting for lock (blast2) ... INFO: pkgstripfiles: waiting for lock (ncbi-blast+-legacy) ... INFO: pkgstripfiles: waiting for lock (blast2) ... INFO: pkgstripfiles: waiting for lock (ncbi-blast+-legacy) ... INFO: pkgstripfiles: waiting for lock (blast2) ... INFO: pkgstripfiles: waiting for lock (ncbi-blast+-legacy) ... INFO: pkgstripfiles: waiting for lock (blast2) ... INFO: pkgstripfiles: waiting for lock (ncbi-blast+-legacy) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/ncbi-blast+/DEBIAN/control, package ncbi-blast+, directory debian/ncbi-blast+ pkgstripfiles: Truncating usr/share/doc/ncbi-blast+/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package ncbi-blast+ ... pkgstripfiles: No PNG files. dpkg-deb: building package 'ncbi-blast+' in '../ncbi-blast+_2.6.0-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (blast2) ... Searching for duplicated docs in dependency ncbi-blast+... symlinking changelog.Debian.gz in ncbi-blast+-legacy to file in ncbi-blast+ pkgstripfiles: Running PNG optimization (using 4 cpus) for package ncbi-blast+-legacy ... pkgstripfiles: No PNG files. dpkg-deb: building package 'ncbi-blast+-legacy' in '../ncbi-blast+-legacy_2.6.0-1_all.deb'. Searching for duplicated docs in dependency ncbi-blast+-legacy... symlinking changelog.Debian.gz in blast2 to file in ncbi-blast+ pkgstripfiles: Running PNG optimization (using 4 cpus) for package blast2 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'blast2' in '../blast2_2.6.0-1_all.deb'. dpkg-genchanges --build=any,all -mLaunchpad Build Daemon >../ncbi-blast+_2.6.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build ncbi-blast+-2.6.0 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20170117-0004 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ ncbi-blast+_2.6.0-1_amd64.changes: ---------------------------------- Format: 1.8 Date: Sun, 15 Jan 2017 17:12:27 +0000 Source: ncbi-blast+ Binary: ncbi-blast+ ncbi-blast+-legacy blast2 Architecture: all amd64 Version: 2.6.0-1 Distribution: zesty-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Olivier Sallou Description: blast2 - transitional dummy package to ncbi-blast+-legacy ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Changes: ncbi-blast+ (2.6.0-1) unstable; urgency=medium . * New upstream release Checksums-Sha1: 0635a909753b66e661dc61a70deb3c6f532a0e6b 4246 blast2_2.6.0-1_all.deb ade06e1dc0ff49ff73150fd86a844f7cab97a238 107319258 ncbi-blast+-dbgsym_2.6.0-1_amd64.ddeb 654112aea996ae7677d48a36ad81864ed94e10ef 4754 ncbi-blast+-legacy_2.6.0-1_all.deb a7d8343b2ff4cbf643029001ed8bf6b3c1495b27 9446126 ncbi-blast+_2.6.0-1_amd64.deb Checksums-Sha256: bf6504af6849bd255c8ead83470d275a7246396df7acd5cb57a35e6c8b1513fc 4246 blast2_2.6.0-1_all.deb 67f04bec0cc5cac67377be1b610d1fdedd3efc09398ea46e4b065743e57918c9 107319258 ncbi-blast+-dbgsym_2.6.0-1_amd64.ddeb dfa89d3eb2300cc0ccaa703d8c696142c6f0be21435da30a0647decf0eb90138 4754 ncbi-blast+-legacy_2.6.0-1_all.deb db61b0e566ba6ebb5e3a3d7bf0c157f76ff3bb3fca7dddc3877a3615cb55c6f9 9446126 ncbi-blast+_2.6.0-1_amd64.deb Files: ce9c734cb9e520c5f3ebdc43533f942d 4246 oldlibs extra blast2_2.6.0-1_all.deb c64f35a723b73f842b900bd969c9373a 107319258 science extra ncbi-blast+-dbgsym_2.6.0-1_amd64.ddeb 8f0357b7eb271ba3c91cdd9a4387012d 4754 science optional ncbi-blast+-legacy_2.6.0-1_all.deb c3fec8da33ee63d90b3c0e19491e98b0 9446126 science optional ncbi-blast+_2.6.0-1_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ blast2_2.6.0-1_all.deb ---------------------- new debian package, version 2.0. size 4246 bytes: control archive=554 bytes. 557 bytes, 15 lines control 65 bytes, 1 lines md5sums Package: blast2 Source: ncbi-blast+ (2.6.0-1) Version: 1:2.6.0-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 21 Depends: ncbi-blast+-legacy Section: oldlibs Priority: extra Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Description: transitional dummy package to ncbi-blast+-legacy This is a transitional dummy package for ncbi-blast+-legacy. It can safely be removed. drwxr-xr-x root/root 0 2017-01-15 17:12 ./ drwxr-xr-x root/root 0 2017-01-15 17:12 ./usr/ drwxr-xr-x root/root 0 2017-01-15 17:12 ./usr/share/ drwxr-xr-x root/root 0 2017-01-15 17:12 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-01-15 17:12 ./usr/share/doc/blast2/ lrwxrwxrwx root/root 0 2017-01-15 17:12 ./usr/share/doc/blast2/changelog.Debian.gz -> ../ncbi-blast+/changelog.Debian.gz -rw-r--r-- root/root 9632 2017-01-15 17:12 ./usr/share/doc/blast2/copyright ncbi-blast+-legacy_2.6.0-1_all.deb ---------------------------------- new debian package, version 2.0. size 4754 bytes: control archive=854 bytes. 665 bytes, 18 lines control 483 bytes, 9 lines md5sums Package: ncbi-blast+-legacy Source: ncbi-blast+ Version: 2.6.0-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 30 Depends: ncbi-blast+ Breaks: blast2 (<< 1:2.5.0~) Replaces: blast2 (<< 1:2.5.0~) Section: science Priority: optional Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Description: NCBI Blast legacy call script This package adds some fake scripts to call NCBI+ programs with the NCBI blast command line. It makes use of the legacy_blast script in ncbi-blast+ package. drwxr-xr-x root/root 0 2017-01-15 17:12 ./ drwxr-xr-x root/root 0 2017-01-15 17:12 ./usr/ drwxr-xr-x root/root 0 2017-01-15 17:12 ./usr/bin/ -rwxr-xr-x root/root 63 2017-01-15 17:12 ./usr/bin/bl2seq -rwxr-xr-x root/root 65 2017-01-15 17:12 ./usr/bin/blastall -rwxr-xr-x root/root 65 2017-01-15 17:12 ./usr/bin/blastpgp -rwxr-xr-x root/root 65 2017-01-15 17:12 ./usr/bin/fastacmd -rwxr-xr-x root/root 65 2017-01-15 17:12 ./usr/bin/formatdb -rwxr-xr-x root/root 66 2017-01-15 17:12 ./usr/bin/megablast -rwxr-xr-x root/root 65 2017-01-15 17:12 ./usr/bin/rpsblast -rwxr-xr-x root/root 64 2017-01-15 17:12 ./usr/bin/seedtop drwxr-xr-x root/root 0 2017-01-15 17:12 ./usr/share/ drwxr-xr-x root/root 0 2017-01-15 17:12 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-01-15 17:12 ./usr/share/doc/ncbi-blast+-legacy/ lrwxrwxrwx root/root 0 2017-01-15 17:12 ./usr/share/doc/ncbi-blast+-legacy/changelog.Debian.gz -> ../ncbi-blast+/changelog.Debian.gz -rw-r--r-- root/root 9632 2017-01-15 17:12 ./usr/share/doc/ncbi-blast+-legacy/copyright ncbi-blast+_2.6.0-1_amd64.deb ----------------------------- new debian package, version 2.0. size 9446126 bytes: control archive=3821 bytes. 1310 bytes, 25 lines control 6674 bytes, 101 lines md5sums Package: ncbi-blast+ Version: 2.6.0-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 39314 Depends: ncbi-data, python, perl:any, libbz2-1.0, libc6 (>= 2.15), libgcc1 (>= 1:3.4), libgnutls30 (>= 3.5.6), libgomp1 (>= 4.9), libpcre3, libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.0) Enhances: t-coffee Section: science Priority: optional Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Description: next generation suite of BLAST sequence search tools The Basic Local Alignment Search Tool (BLAST) is the most widely used sequence similarity tool. There are versions of BLAST that compare protein queries to protein databases, nucleotide queries to nucleotide databases, as well as versions that translate nucleotide queries or databases in all six frames and compare to protein databases or queries. PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting with a protein query, and then uses that PSSM to perform further searches. It is also possible to compare a protein or nucleotide query to a database of PSSM’s. The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as a network service. drwxr-xr-x root/root 0 2017-01-15 17:12 ./ drwxr-xr-x root/root 0 2017-01-15 17:12 ./usr/ drwxr-xr-x root/root 0 2017-01-15 17:12 ./usr/bin/ -rwxr-xr-x root/root 231920 2017-01-15 17:12 ./usr/bin/blast_formatter -rwxr-xr-x root/root 104800 2017-01-15 17:12 ./usr/bin/blastdb_aliastool -rwxr-xr-x root/root 149776 2017-01-15 17:12 ./usr/bin/blastdbcheck -rwxr-xr-x root/root 117080 2017-01-15 17:12 ./usr/bin/blastdbcmd -rwxr-xr-x root/root 67752 2017-01-15 17:12 ./usr/bin/blastdbcp -rwxr-xr-x root/root 195064 2017-01-15 17:12 ./usr/bin/blastn -rwxr-xr-x root/root 190968 2017-01-15 17:12 ./usr/bin/blastp -rwxr-xr-x root/root 190968 2017-01-15 17:12 ./usr/bin/blastx -rwxr-xr-x root/root 63664 2017-01-15 17:12 ./usr/bin/convert2blastmask -rwxr-xr-x root/root 223736 2017-01-15 17:12 ./usr/bin/deltablast -rwxr-xr-x root/root 43240 2017-01-15 17:12 ./usr/bin/dustmasker -rwxr-xr-x root/root 26792 2017-01-15 17:12 ./usr/bin/gene_info_reader -rwxr-xr-x root/root 51346 2017-01-15 17:12 ./usr/bin/legacy_blast -rwxr-xr-x root/root 186720 2017-01-15 17:12 ./usr/bin/makeblastdb -rwxr-xr-x root/root 55456 2017-01-15 17:12 ./usr/bin/makembindex -rwxr-xr-x root/root 145760 2017-01-15 17:12 ./usr/bin/makeprofiledb -rwxr-xr-x root/root 227832 2017-01-15 17:12 ./usr/bin/psiblast -rwxr-xr-x root/root 190968 2017-01-15 17:12 ./usr/bin/rpsblast+ -rwxr-xr-x root/root 190968 2017-01-15 17:12 ./usr/bin/rpstblastn -rwxr-xr-x root/root 195064 2017-01-15 17:12 ./usr/bin/seedtop+ -rwxr-xr-x root/root 43248 2017-01-15 17:12 ./usr/bin/segmasker -rwxr-xr-x root/root 43184 2017-01-15 17:12 ./usr/bin/seqdb_perf -rwxr-xr-x root/root 203256 2017-01-15 17:12 ./usr/bin/tblastn -rwxr-xr-x root/root 190968 2017-01-15 17:12 ./usr/bin/tblastx -rwxr-xr-x root/root 12488 2017-01-15 17:12 ./usr/bin/update_blastdb -rwxr-xr-x root/root 51360 2017-01-15 17:12 ./usr/bin/windowmasker -rwxr-xr-x root/root 5950 2017-01-15 17:12 ./usr/bin/windowmasker_2.2.22_adapter drwxr-xr-x root/root 0 2017-01-15 17:12 ./usr/lib/ drwxr-xr-x root/root 0 2017-01-15 17:12 ./usr/lib/ncbi-blast+/ -rw-r--r-- root/root 1005592 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libalign_format.so -rw-r--r-- root/root 333856 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libbiblio.so -rw-r--r-- root/root 677504 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libblast.so -rw-r--r-- root/root 59408 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libblast_services.so -rw-r--r-- root/root 79888 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libblastdb.so -rw-r--r-- root/root 161824 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libblastdb_format.so -rw-r--r-- root/root 669888 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libblastinput.so -rw-r--r-- root/root 75792 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libblastxml.so -rw-r--r-- root/root 165904 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libblastxml2.so -rw-r--r-- root/root 80000 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libcomposition_adjustment.so 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+------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 3036496 Build-Time: 3092 Distribution: zesty-proposed Host Architecture: amd64 Install-Time: 38 Job: ncbi-blast+_2.6.0-1.dsc Machine Architecture: amd64 Package: ncbi-blast+ Package-Time: 3135 Source-Version: 2.6.0-1 Space: 3036496 Status: successful Version: 2.6.0-1 -------------------------------------------------------------------------------- Finished at 20170117-0004 Build needed 00:52:15, 3036496k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-11870423'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-11870423/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-11870423'] Unmounting chroot for build PACKAGEBUILD-11870423... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-11870423'] Removing build PACKAGEBUILD-11870423